Wall clock time and date at job start Tue Mar 31 2020 17:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00593 * 2 1 4 4 H 1.09001 * 110.91361 * 32.45288 * 3 2 1 5 5 C 1.54907 * 111.00746 * 268.55150 * 3 2 1 6 6 N 1.47420 * 104.83524 * 204.91501 * 5 3 2 7 7 C 1.36932 * 125.65088 * 204.09015 * 6 5 3 8 8 H 1.08001 * 120.00072 * 180.02562 * 7 6 5 9 9 C 1.38815 * 120.00288 * 0.04266 * 7 6 5 10 10 N 1.31619 * 119.99512 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00603 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47128 * 89.99827 * 11 9 7 13 13 H 1.48497 * 109.47297 * 210.00245 * 11 9 7 14 14 H 1.48507 * 109.46877 * 330.00101 * 11 9 7 15 15 C 1.47026 * 108.70428 * 24.12518 * 6 5 3 16 16 C 1.54330 * 107.26840 * 358.94103 * 15 6 5 17 17 H 1.08998 * 110.71700 * 96.16950 * 16 15 6 18 18 N 1.46495 * 110.72220 * 219.44076 * 16 15 6 19 19 C 1.34778 * 120.00419 * 273.55342 * 18 16 15 20 20 O 1.21279 * 119.99538 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00038 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.46653 * 179.97438 * 21 19 18 23 23 C 1.53003 * 109.46917 * 179.97438 * 22 21 19 24 24 C 1.50702 * 109.47397 * 180.02562 * 23 22 21 25 25 C 1.38224 * 119.62145 * 124.99785 * 24 23 22 26 26 C 1.38624 * 119.16171 * 179.97438 * 25 24 23 27 27 C 1.38670 * 118.42263 * 0.02562 * 26 25 24 28 28 C 1.38184 * 119.16328 * 359.97438 * 27 26 25 29 29 N 1.31855 * 119.61094 * 304.72284 * 24 23 22 30 30 H 1.08996 * 109.47388 * 59.99216 * 1 2 3 31 31 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46862 * 299.99886 * 1 2 3 33 33 H 1.08997 * 110.36783 * 86.07220 * 5 3 2 34 34 H 1.08997 * 110.45914 * 323.79871 * 5 3 2 35 35 H 0.97003 * 120.00403 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.88351 * 118.35702 * 15 6 5 37 37 H 1.08998 * 109.88379 * 239.52492 * 15 6 5 38 38 H 0.97005 * 119.99930 * 93.54212 * 18 16 15 39 39 H 1.09001 * 109.46862 * 299.99367 * 21 19 18 40 40 H 1.08996 * 109.47251 * 59.99525 * 21 19 18 41 41 H 1.09001 * 109.47258 * 299.99478 * 22 21 19 42 42 H 1.08996 * 109.47391 * 59.99964 * 22 21 19 43 43 H 1.09001 * 109.46746 * 299.99812 * 23 22 21 44 44 H 1.08996 * 109.47103 * 59.99808 * 23 22 21 45 45 H 1.08000 * 120.41803 * 359.97438 * 25 24 23 46 46 H 1.08003 * 120.78796 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.42422 * 180.02562 * 27 26 25 48 48 H 1.08000 * 119.61847 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3837 2.0103 0.5464 5 6 2.2696 1.7977 -1.4456 6 7 3.3612 2.7805 -1.3195 7 6 3.6238 3.7986 -2.1968 8 1 4.4512 4.4684 -2.0147 9 6 2.8263 3.9701 -3.3200 10 7 1.8174 3.1544 -3.5414 11 14 3.1839 5.3594 -4.5163 12 1 4.1237 4.8822 -5.5624 13 1 1.9178 5.8025 -5.1532 14 1 3.7948 6.4980 -3.7843 15 6 4.1218 2.4860 -0.0963 16 6 3.4486 1.2736 0.5810 17 1 3.9550 0.3483 0.3067 18 7 3.4237 1.4407 2.0362 19 6 4.4796 1.0510 2.7776 20 8 5.4504 0.5616 2.2399 21 6 4.4541 1.2234 4.2745 22 6 5.7644 0.7043 4.8699 23 6 5.7388 0.8798 6.3896 24 6 7.0296 0.3691 6.9762 25 6 7.7919 1.1991 7.7766 26 6 8.9773 0.7193 8.3116 27 6 9.3537 -0.5830 8.0199 28 6 8.5402 -1.3541 7.2117 29 7 7.4160 -0.8661 6.7243 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.3762 2.2730 -1.8505 34 1 2.5781 0.9678 -2.0813 35 1 1.2602 3.2739 -4.3264 36 1 5.1534 2.2428 -0.3507 37 1 4.0957 3.3461 0.5727 38 1 2.6471 1.8319 2.4663 39 1 4.3379 2.2798 4.5166 40 1 3.6182 0.6612 4.6908 41 1 5.8801 -0.3522 4.6278 42 1 6.6004 1.2662 4.4537 43 1 5.6232 1.9364 6.6313 44 1 4.9026 0.3182 6.8062 45 1 7.4680 2.2086 7.9826 46 1 9.5934 1.3453 8.9401 47 1 10.2707 -0.9899 8.4199 48 1 8.8261 -2.3695 6.9800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213761666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:41 Heat of formation + Delta-G solvation = -49.537688 kcal Electronic energy + Delta-G solvation = -27820.493483 eV Core-core repulsion = 23875.036207 eV Total energy + Delta-G solvation = -3945.457276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18907 -40.95271 -39.62775 -37.53160 -35.98643 -35.54527 -33.71305 -33.26183 -32.35540 -30.62291 -29.19227 -28.05399 -27.51848 -26.04743 -24.54695 -24.00103 -22.48938 -22.18150 -21.68422 -21.10270 -19.16598 -18.22571 -17.93013 -17.54348 -17.23098 -17.10626 -16.64186 -16.52624 -16.25836 -15.84956 -15.69516 -15.36738 -15.26601 -14.95171 -14.75575 -14.48793 -14.15482 -13.93785 -13.92417 -13.74981 -13.20061 -13.07243 -13.00440 -12.75717 -12.73432 -12.58692 -12.52666 -12.33664 -12.16381 -12.04919 -11.91163 -11.64427 -11.54768 -10.96911 -10.81056 -10.75739 -10.52276 -10.26916 -10.09550 -9.83058 -8.98949 -7.81972 -5.29518 0.22710 0.42285 1.46217 1.48818 1.57404 1.70572 2.13234 2.44512 2.74318 2.90593 3.28601 3.45052 3.58394 3.68672 3.78967 3.90086 3.97811 4.06058 4.07115 4.16840 4.22954 4.30437 4.32417 4.36150 4.47866 4.57943 4.61557 4.67076 4.71772 4.77066 4.77641 4.83367 4.88662 4.89141 4.95735 5.03597 5.18797 5.28195 5.32410 5.36960 5.42972 5.44023 5.52058 5.66927 5.87126 6.17751 6.30781 6.60964 7.03217 7.13842 7.33126 7.67742 8.30500 9.19449 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002069 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.923385 B =13531.158227 C =14661.968114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.078 3.922 4 H 0.093 0.907 5 C 0.144 3.856 6 N -0.619 5.619 7 C -0.243 4.243 8 H 0.082 0.918 9 C -0.064 4.064 10 N -0.947 5.947 11 Si 0.985 3.015 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.133 3.867 16 C 0.154 3.846 17 H 0.072 0.928 18 N -0.704 5.704 19 C 0.505 3.495 20 O -0.591 6.591 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.063 4.063 24 C 0.108 3.892 25 C -0.176 4.176 26 C -0.080 4.080 27 C -0.182 4.182 28 C 0.079 3.921 29 N -0.518 5.518 30 H 0.033 0.967 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.089 0.911 34 H -0.015 1.015 35 H 0.250 0.750 36 H 0.011 0.989 37 H 0.044 0.956 38 H 0.417 0.583 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.158 0.842 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -3.432 27.819 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.019 3.981 4 H 0.110 0.890 5 C 0.018 3.982 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.256 4.256 10 N -0.596 5.596 11 Si 0.813 3.187 12 H -0.217 1.217 13 H -0.214 1.214 14 H -0.192 1.192 15 C 0.006 3.994 16 C 0.047 3.953 17 H 0.090 0.910 18 N -0.357 5.357 19 C 0.294 3.706 20 O -0.471 6.471 21 C -0.165 4.165 22 C -0.127 4.127 23 C -0.101 4.101 24 C -0.030 4.030 25 C -0.196 4.196 26 C -0.106 4.106 27 C -0.202 4.202 28 C -0.078 4.078 29 N -0.228 5.228 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.003 0.997 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.176 0.824 46 H 0.179 0.821 47 H 0.176 0.824 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.445 -4.394 26.760 27.480 hybrid contribution 0.481 1.056 -0.786 1.402 sum 4.927 -3.338 25.974 26.647 Atomic orbital electron populations 1.22970 0.79258 1.03870 1.00768 1.87838 1.21787 1.26864 1.95009 1.23597 0.92768 0.84796 0.96956 0.88974 1.22100 0.93819 0.90210 0.92087 1.44577 1.32796 1.32921 1.24416 1.19449 1.11300 1.04842 1.01577 0.90016 1.25684 0.97994 1.01872 1.00086 1.69992 1.20550 1.40126 1.28979 0.84981 0.76718 0.78570 0.78437 1.21690 1.21439 1.19180 1.21670 0.93981 0.95368 0.88385 1.21541 0.95499 0.97446 0.80806 0.91024 1.45837 1.20468 1.63851 1.05522 1.21660 0.81416 0.76008 0.91502 1.90706 1.35109 1.46001 1.75314 1.21724 1.00929 1.06159 0.87665 1.21093 0.96128 1.01077 0.94386 1.20612 0.93035 1.02823 0.93599 1.21666 0.97381 0.89606 0.94314 1.22339 0.96120 1.02166 0.98970 1.22023 0.95737 0.95725 0.97085 1.22456 1.02115 0.95579 1.00019 1.23138 0.89912 1.01030 0.93695 1.67466 1.17328 1.15317 1.22701 0.94786 0.87881 0.91861 0.89346 0.99656 0.94010 0.97136 0.93849 0.74518 0.85404 0.85746 0.93279 0.93754 0.87285 0.88832 0.82353 0.82068 0.82386 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.89 113.37 1.23 1.97 16 2 O -0.40 -14.36 10.51 -148.98 -1.57 -15.93 16 3 C 0.08 3.01 3.10 31.98 0.10 3.11 16 4 H 0.09 3.08 7.76 -2.39 -0.02 3.06 16 5 C 0.14 7.32 5.62 86.86 0.49 7.81 16 6 N -0.62 -33.13 3.39 -692.00 -2.35 -35.48 16 7 C -0.24 -13.89 10.27 84.03 0.86 -13.03 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 9 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 10 N -0.95 -56.20 10.09 21.65 0.22 -55.98 16 11 Si 0.99 45.69 29.55 68.60 2.03 47.72 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.13 6.00 6.99 86.73 0.61 6.61 16 16 C 0.15 5.95 2.97 46.18 0.14 6.09 16 17 H 0.07 3.21 7.70 -2.39 -0.02 3.19 16 18 N -0.70 -19.96 5.13 -436.92 -2.24 -22.20 16 19 C 0.51 14.79 7.83 87.66 0.69 15.47 16 20 O -0.59 -23.94 15.71 -3.03 -0.05 -23.99 16 21 C -0.13 -2.16 5.70 29.85 0.17 -1.99 16 22 C -0.09 -1.87 4.36 30.59 0.13 -1.74 16 23 C -0.06 -0.92 5.61 29.85 0.17 -0.75 16 24 C 0.11 2.03 6.17 42.55 0.26 2.29 16 25 C -0.18 -2.45 9.71 22.36 0.22 -2.23 16 26 C -0.08 -0.95 10.18 22.47 0.23 -0.72 16 27 C -0.18 -2.38 10.11 22.36 0.23 -2.16 16 28 C 0.08 1.43 11.18 84.67 0.95 2.37 16 29 N -0.52 -11.93 9.89 -183.88 -1.82 -13.75 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 33 H 0.09 4.92 5.87 -2.39 -0.01 4.91 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.04 1.84 8.03 -2.39 -0.02 1.82 16 38 H 0.42 8.44 8.52 -92.70 -0.79 7.65 16 39 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.36 7.91 -2.39 -0.02 1.34 16 42 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 43 H 0.11 0.92 7.87 -2.39 -0.02 0.90 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.16 1.28 7.95 -2.91 -0.02 1.25 16 46 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 47 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 48 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -81.54 396.92 1.32 -80.22 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.16 Total: 19.45 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 6.93 Total: 19.95 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -6.19 Total: -127.42 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.61 Total: -39.92 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -81.54 1.32 -80.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213761666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.683 kcal (2) G-P(sol) polarization free energy of solvation -81.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds