Wall clock time and date at job start Tue Mar 31 2020 17:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00490 * 2 1 4 4 C 1.38757 * 120.04985 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94257 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05265 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.11462 * 0.04822 * 6 5 4 8 8 C 1.50702 * 119.97320 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.51968 * 23.30066 * 8 7 6 10 10 C 1.34777 * 120.00445 * 61.85810 * 9 8 7 11 11 O 1.21280 * 119.99661 * 355.11110 * 10 9 8 12 12 C 1.50697 * 120.00364 * 175.11527 * 10 9 8 13 13 H 1.09000 * 109.47361 * 39.99845 * 12 10 9 14 14 N 1.46899 * 109.47290 * 159.99658 * 12 10 9 15 15 C 1.50706 * 109.47003 * 279.99772 * 12 10 9 16 16 H 1.08004 * 119.99861 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00141 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00096 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 119.99906 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.47068 * 90.00249 * 19 17 15 21 21 H 1.48503 * 109.47337 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47279 * 330.00173 * 19 17 15 23 23 C 1.53120 * 109.57331 * 143.45783 * 8 7 6 24 24 C 1.53040 * 109.27578 * 177.59154 * 23 8 7 25 25 N 1.46837 * 109.52417 * 300.82224 * 24 23 8 26 26 C 1.46851 * 111.20116 * 61.74377 * 25 24 23 27 27 C 1.53036 * 109.52111 * 298.25753 * 26 25 24 28 28 C 1.38164 * 120.05412 * 0.22803 * 7 6 5 29 29 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47143 * 300.00032 * 1 2 3 31 31 H 1.08996 * 109.47019 * 60.00089 * 1 2 3 32 32 H 1.07996 * 120.02859 * 0.05069 * 4 3 2 33 33 H 1.07997 * 119.97039 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93903 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99859 * 242.13226 * 9 8 7 36 36 H 1.00891 * 111.00309 * 296.04966 * 14 12 10 37 37 H 1.00910 * 110.99795 * 59.99974 * 14 12 10 38 38 H 0.97006 * 120.00359 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.50155 * 297.53536 * 23 8 7 40 40 H 1.08996 * 109.50388 * 57.65153 * 23 8 7 41 41 H 1.08998 * 109.46221 * 180.80101 * 24 23 8 42 42 H 1.09005 * 109.44971 * 60.83387 * 24 23 8 43 43 H 1.00905 * 111.00085 * 297.64378 * 25 24 23 44 44 H 1.09002 * 109.46096 * 178.24496 * 26 25 24 45 45 H 1.08990 * 109.45198 * 58.26702 * 26 25 24 46 46 H 1.09007 * 109.50213 * 299.23534 * 27 26 25 47 47 H 1.09001 * 109.50386 * 179.12190 * 27 26 25 48 48 H 1.08004 * 120.02776 * 179.73945 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5170 -0.0005 8 6 5.5609 2.5981 -0.0005 9 7 5.9814 3.8907 0.5456 10 6 5.6696 4.2198 1.8149 11 8 4.9661 3.4859 2.4762 12 6 6.1951 5.4996 2.4123 13 1 6.1544 6.2927 1.6658 14 7 5.3715 5.8740 3.5697 15 6 7.6217 5.2989 2.8547 16 1 8.0998 4.3402 2.7174 17 6 8.3161 6.3386 3.4358 18 7 9.5608 6.1633 3.8223 19 14 7.4888 7.9964 3.6740 20 1 6.8205 8.0302 4.9997 21 1 8.5093 9.0732 3.6066 22 1 6.4789 8.2039 2.6052 23 6 6.1354 1.4683 0.8586 24 6 7.6640 1.5204 0.8054 25 7 8.1117 1.3779 -0.5858 26 6 7.6112 2.4778 -1.4201 27 6 6.0811 2.4543 -1.4334 28 6 3.4311 1.2848 -0.0057 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2129 2.3203 -0.0001 33 1 1.3340 4.5113 -0.0011 34 1 3.7923 4.6380 -0.0005 35 1 6.4810 4.5116 -0.0076 36 1 4.4240 6.0769 3.2889 37 1 5.3929 5.1542 4.2767 38 1 10.0495 6.8950 4.2307 39 1 5.8027 1.5898 1.8894 40 1 5.7905 0.5081 0.4751 41 1 8.0761 0.7086 1.4046 42 1 8.0086 2.4755 1.2018 43 1 7.8376 0.4835 -0.9641 44 1 7.9850 2.3612 -2.4374 45 1 7.9563 3.4282 -1.0131 46 1 5.7353 1.5095 -1.8530 47 1 5.7096 3.2802 -2.0400 48 1 4.0206 0.3799 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221094375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:56 Heat of formation + Delta-G solvation = -38.157384 kcal Electronic energy + Delta-G solvation = -30567.624268 eV Core-core repulsion = 26622.660478 eV Total energy + Delta-G solvation = -3944.963789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90553 -39.65897 -37.92234 -37.14661 -34.19871 -33.82216 -31.80937 -31.59761 -30.83539 -30.13410 -29.02685 -27.34187 -26.60857 -24.17261 -23.12519 -22.92366 -22.30319 -21.20400 -19.99033 -19.05243 -17.97134 -17.08821 -16.76002 -16.19231 -16.11185 -15.84318 -15.73857 -15.27385 -14.76072 -14.49697 -14.23095 -14.05088 -13.95438 -13.86451 -13.61758 -13.22139 -12.95844 -12.80656 -12.59239 -12.41886 -12.37351 -12.12445 -11.93358 -11.87627 -11.41169 -11.16321 -11.12354 -11.07615 -10.86767 -10.72225 -10.53696 -10.41791 -9.89211 -9.37907 -9.17970 -8.78516 -8.63296 -8.55786 -8.23689 -8.13653 -7.67154 -6.10060 -4.23887 1.36185 1.52316 3.13954 3.47152 3.50790 3.56699 3.68039 3.72954 3.84106 4.39656 4.56749 4.64773 4.72472 4.82539 4.91840 4.94834 4.97517 5.04300 5.16423 5.18092 5.23616 5.35462 5.38552 5.42792 5.54899 5.62064 5.64737 5.76117 5.84598 5.85183 5.98249 6.01252 6.07427 6.15553 6.30122 6.37259 6.45580 6.48857 6.61521 6.64339 6.76046 7.04496 7.15886 7.32694 7.35857 7.52002 7.96233 8.17801 8.20776 8.56779 8.86027 9.00536 9.50305 10.98220 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004270 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.441190 B = 6556.315292 C = 7922.035700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.133 4.133 7 C -0.023 4.023 8 C 0.220 3.780 9 N -0.723 5.723 10 C 0.506 3.494 11 O -0.552 6.552 12 C 0.173 3.827 13 H 0.056 0.944 14 N -0.823 5.823 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.088 3.912 18 N -0.891 5.891 19 Si 0.938 3.062 20 H -0.279 1.279 21 H -0.318 1.318 22 H -0.275 1.275 23 C -0.163 4.163 24 C 0.056 3.944 25 N -0.682 5.682 26 C 0.057 3.943 27 C -0.154 4.154 28 C -0.145 4.145 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.401 0.599 36 H 0.311 0.689 37 H 0.345 0.655 38 H 0.266 0.734 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.333 0.667 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -9.050 -13.044 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.233 4.233 5 C -0.099 4.099 6 C -0.151 4.151 7 C -0.025 4.025 8 C 0.133 3.867 9 N -0.376 5.376 10 C 0.294 3.706 11 O -0.430 6.430 12 C 0.060 3.940 13 H 0.074 0.926 14 N -0.353 5.353 15 C -0.559 4.559 16 H 0.093 0.907 17 C -0.118 4.118 18 N -0.527 5.527 19 Si 0.770 3.230 20 H -0.205 1.205 21 H -0.247 1.247 22 H -0.201 1.201 23 C -0.202 4.202 24 C -0.073 4.073 25 N -0.309 5.309 26 C -0.073 4.073 27 C -0.194 4.194 28 C -0.164 4.164 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.236 0.764 36 H 0.122 0.878 37 H 0.160 0.840 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.150 0.850 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.099 -8.782 -12.246 19.966 hybrid contribution -2.072 0.152 -0.270 2.095 sum -15.170 -8.629 -12.516 21.477 Atomic orbital electron populations 1.23002 0.78744 1.03616 1.01229 1.86046 1.21100 1.27206 1.89052 1.18900 0.92176 0.83937 0.97145 1.21117 0.99558 0.92503 1.10139 1.20858 0.94567 0.96785 0.97675 1.20837 0.93381 0.98306 1.02587 1.19773 0.95130 0.92255 0.95317 1.18955 0.88852 0.85664 0.93229 1.46257 1.58834 1.17922 1.14586 1.22665 0.77688 0.90021 0.80218 1.90568 1.38152 1.53593 1.60659 1.19701 0.95075 0.88718 0.90467 0.92608 1.59441 1.13696 1.48589 1.13527 1.20442 0.92021 1.00307 1.43129 0.90737 1.24960 0.94161 0.99759 0.92901 1.69936 1.09983 1.33196 1.39536 0.85852 0.76878 0.80642 0.79662 1.20519 1.24722 1.20059 1.22677 0.97905 0.96605 1.03059 1.22063 0.91995 1.03989 0.89238 1.60615 1.62481 1.05012 1.02790 1.22059 0.90945 0.96455 0.97876 1.22544 0.98813 1.03244 0.94756 1.20146 0.91114 0.98025 1.07070 0.88463 0.92769 0.92865 0.85983 0.86153 0.86233 0.76399 0.87776 0.84017 0.92465 0.88780 0.91853 0.90956 0.89198 0.85000 0.90622 0.90027 0.90675 0.90720 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.05 10.50 -19.44 -0.20 -4.26 16 3 C 0.12 1.71 6.69 -39.22 -0.26 1.45 16 4 C -0.21 -2.73 9.04 -39.43 -0.36 -3.09 16 5 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 6 C -0.13 -1.96 8.38 -39.56 -0.33 -2.30 16 7 C -0.02 -0.35 3.74 -104.65 -0.39 -0.74 16 8 C 0.22 3.12 0.51 -132.85 -0.07 3.05 16 9 N -0.72 -11.54 3.20 -48.57 -0.16 -11.70 16 10 C 0.51 9.96 5.44 -10.99 -0.06 9.90 16 11 O -0.55 -11.98 13.18 5.56 0.07 -11.91 16 12 C 0.17 3.81 2.51 -70.02 -0.18 3.63 16 13 H 0.06 1.20 7.20 -51.93 -0.37 0.83 16 14 N -0.82 -17.62 6.52 -6.65 -0.04 -17.66 16 15 C -0.52 -13.72 9.29 -34.44 -0.32 -14.04 16 16 H 0.07 2.16 7.98 -52.48 -0.42 1.74 16 17 C 0.09 2.43 5.47 -17.82 -0.10 2.34 16 18 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 19 Si 0.94 22.96 26.03 -169.99 -4.42 18.53 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.28 -6.43 6.54 56.52 0.37 -6.06 16 23 C -0.16 -2.46 4.21 -26.65 -0.11 -2.57 16 24 C 0.06 0.86 6.41 -3.84 -0.02 0.84 16 25 N -0.68 -8.76 6.87 -113.82 -0.78 -9.54 16 26 C 0.06 0.66 6.39 -3.83 -0.02 0.63 16 27 C -0.15 -1.73 4.89 -26.65 -0.13 -1.86 16 28 C -0.14 -2.10 9.09 -39.44 -0.36 -2.46 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.78 6.89 -52.49 -0.36 1.42 16 35 H 0.40 5.94 7.55 -40.82 -0.31 5.63 16 36 H 0.31 5.90 9.06 -39.30 -0.36 5.54 16 37 H 0.35 7.66 8.57 -39.29 -0.34 7.33 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.09 1.77 6.17 -51.93 -0.32 1.45 16 40 H 0.06 0.84 6.42 -51.93 -0.33 0.51 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.69 7.69 -51.93 -0.40 1.30 16 43 H 0.33 3.62 8.86 -39.29 -0.35 3.28 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.07 7.06 -51.93 -0.37 0.71 16 46 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.13 1.73 6.34 -52.48 -0.33 1.39 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -31.82 371.41 -8.37 -40.19 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -7.09 Total: 21.78 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.12 Total: -5.45 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.21 Total: -64.48 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.13 Total: -16.17 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.42 Total: 18.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.82 -8.37 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221094375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.028 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds