Wall clock time and date at job start Tue Mar 31 2020 17:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00490 * 2 1 4 4 C 1.38757 * 120.04985 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94257 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05265 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.11462 * 0.04822 * 6 5 4 8 8 C 1.50702 * 119.97320 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.51968 * 23.30066 * 8 7 6 10 10 C 1.34777 * 120.00445 * 61.85810 * 9 8 7 11 11 O 1.21280 * 119.99661 * 355.11110 * 10 9 8 12 12 C 1.50697 * 120.00364 * 175.11527 * 10 9 8 13 13 H 1.09000 * 109.47361 * 39.99845 * 12 10 9 14 14 N 1.46899 * 109.47290 * 159.99658 * 12 10 9 15 15 C 1.50706 * 109.47003 * 279.99772 * 12 10 9 16 16 H 1.08004 * 119.99861 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00141 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00096 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 119.99906 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.47068 * 90.00249 * 19 17 15 21 21 H 1.48503 * 109.47337 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47279 * 330.00173 * 19 17 15 23 23 C 1.53120 * 109.57331 * 143.45783 * 8 7 6 24 24 C 1.53040 * 109.27578 * 177.59154 * 23 8 7 25 25 N 1.46837 * 109.52417 * 300.82224 * 24 23 8 26 26 C 1.46851 * 111.20116 * 61.74377 * 25 24 23 27 27 C 1.53036 * 109.52111 * 298.25753 * 26 25 24 28 28 C 1.38164 * 120.05412 * 0.22803 * 7 6 5 29 29 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47143 * 300.00032 * 1 2 3 31 31 H 1.08996 * 109.47019 * 60.00089 * 1 2 3 32 32 H 1.07996 * 120.02859 * 0.05069 * 4 3 2 33 33 H 1.07997 * 119.97039 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93903 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99859 * 242.13226 * 9 8 7 36 36 H 1.00891 * 111.00309 * 296.04966 * 14 12 10 37 37 H 1.00910 * 110.99795 * 59.99974 * 14 12 10 38 38 H 0.97006 * 120.00359 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.50155 * 297.53536 * 23 8 7 40 40 H 1.08996 * 109.50388 * 57.65153 * 23 8 7 41 41 H 1.08998 * 109.46221 * 180.80101 * 24 23 8 42 42 H 1.09005 * 109.44971 * 60.83387 * 24 23 8 43 43 H 1.00905 * 111.00085 * 297.64378 * 25 24 23 44 44 H 1.09002 * 109.46096 * 178.24496 * 26 25 24 45 45 H 1.08990 * 109.45198 * 58.26702 * 26 25 24 46 46 H 1.09007 * 109.50213 * 299.23534 * 27 26 25 47 47 H 1.09001 * 109.50386 * 179.12190 * 27 26 25 48 48 H 1.08004 * 120.02776 * 179.73945 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5170 -0.0005 8 6 5.5609 2.5981 -0.0005 9 7 5.9814 3.8907 0.5456 10 6 5.6696 4.2198 1.8149 11 8 4.9661 3.4859 2.4762 12 6 6.1951 5.4996 2.4123 13 1 6.1544 6.2927 1.6658 14 7 5.3715 5.8740 3.5697 15 6 7.6217 5.2989 2.8547 16 1 8.0998 4.3402 2.7174 17 6 8.3161 6.3386 3.4358 18 7 9.5608 6.1633 3.8223 19 14 7.4888 7.9964 3.6740 20 1 6.8205 8.0302 4.9997 21 1 8.5093 9.0732 3.6066 22 1 6.4789 8.2039 2.6052 23 6 6.1354 1.4683 0.8586 24 6 7.6640 1.5204 0.8054 25 7 8.1117 1.3779 -0.5858 26 6 7.6112 2.4778 -1.4201 27 6 6.0811 2.4543 -1.4334 28 6 3.4311 1.2848 -0.0057 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2129 2.3203 -0.0001 33 1 1.3340 4.5113 -0.0011 34 1 3.7923 4.6380 -0.0005 35 1 6.4810 4.5116 -0.0076 36 1 4.4240 6.0769 3.2889 37 1 5.3929 5.1542 4.2767 38 1 10.0495 6.8950 4.2307 39 1 5.8027 1.5898 1.8894 40 1 5.7905 0.5081 0.4751 41 1 8.0761 0.7086 1.4046 42 1 8.0086 2.4755 1.2018 43 1 7.8376 0.4835 -0.9641 44 1 7.9850 2.3612 -2.4374 45 1 7.9563 3.4282 -1.0131 46 1 5.7353 1.5095 -1.8530 47 1 5.7096 3.2802 -2.0400 48 1 4.0206 0.3799 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221094375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:55 Heat of formation + Delta-G solvation = -63.504744 kcal Electronic energy + Delta-G solvation = -30568.723412 eV Core-core repulsion = 26622.660478 eV Total energy + Delta-G solvation = -3946.062933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10307 -40.70957 -39.33984 -38.13449 -35.91304 -35.23357 -33.73763 -32.88795 -31.95209 -31.16657 -30.10546 -28.53750 -28.06558 -25.53401 -24.50181 -24.19452 -23.34100 -22.24665 -21.45845 -20.34650 -19.16949 -18.92226 -18.21324 -17.44896 -17.15079 -16.88650 -16.72229 -16.65311 -16.21026 -15.87842 -15.75688 -15.40590 -15.32731 -14.98047 -14.68513 -14.49898 -14.38527 -14.12920 -13.93754 -13.72769 -13.53699 -13.42892 -13.16458 -12.87797 -12.81837 -12.68940 -12.47240 -12.25344 -12.05532 -12.02860 -11.82636 -11.60961 -11.57120 -11.43209 -10.85864 -10.71909 -10.05283 -9.76913 -9.39139 -9.31706 -9.13732 -8.25513 -6.42022 0.33192 0.47891 1.52672 1.60347 1.72668 1.87618 2.24922 2.47709 2.52469 2.76256 3.09496 3.33855 3.58771 3.72778 3.78656 3.89512 4.06320 4.08611 4.11381 4.19087 4.26908 4.28477 4.36128 4.36338 4.39654 4.51771 4.61600 4.66546 4.69737 4.73186 4.80096 4.89959 4.93109 5.03067 5.06829 5.12540 5.19536 5.28791 5.34039 5.41838 5.52944 5.75450 5.80868 6.03503 6.05203 6.26461 6.43627 6.56882 6.66800 6.69888 6.86559 7.33809 7.47738 8.86425 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004270 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.441190 B = 6556.315292 C = 7922.035700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.215 4.215 5 C -0.083 4.083 6 C -0.153 4.153 7 C -0.033 4.033 8 C 0.219 3.781 9 N -0.709 5.709 10 C 0.511 3.489 11 O -0.573 6.573 12 C 0.175 3.825 13 H 0.069 0.931 14 N -0.825 5.825 15 C -0.513 4.513 16 H 0.034 0.966 17 C 0.037 3.963 18 N -0.939 5.939 19 Si 0.998 3.002 20 H -0.284 1.284 21 H -0.321 1.321 22 H -0.253 1.253 23 C -0.154 4.154 24 C 0.067 3.933 25 N -0.683 5.683 26 C 0.057 3.943 27 C -0.142 4.142 28 C -0.162 4.162 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.407 0.593 36 H 0.330 0.670 37 H 0.340 0.660 38 H 0.267 0.733 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.349 0.651 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -9.048 -15.139 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.171 4.171 7 C -0.034 4.034 8 C 0.133 3.867 9 N -0.361 5.361 10 C 0.297 3.703 11 O -0.453 6.453 12 C 0.061 3.939 13 H 0.087 0.913 14 N -0.355 5.355 15 C -0.551 4.551 16 H 0.052 0.948 17 C -0.164 4.164 18 N -0.577 5.577 19 Si 0.828 3.172 20 H -0.211 1.211 21 H -0.251 1.251 22 H -0.177 1.177 23 C -0.194 4.194 24 C -0.063 4.063 25 N -0.312 5.312 26 C -0.073 4.073 27 C -0.182 4.182 28 C -0.181 4.181 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.243 0.757 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.168 0.832 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.676 -8.797 -14.400 23.032 hybrid contribution -1.327 0.007 0.356 1.374 sum -17.003 -8.790 -14.043 23.740 Atomic orbital electron populations 1.23327 0.76492 1.05537 1.02148 1.86029 1.23466 1.26739 1.88826 1.19068 0.92232 0.84865 0.96693 1.21422 1.00959 0.91840 1.09082 1.21158 0.94199 0.98022 0.96757 1.20929 0.94332 0.97989 1.03871 1.19776 0.95002 0.92642 0.95982 1.19119 0.89169 0.83822 0.94626 1.46075 1.57761 1.18823 1.13450 1.22114 0.77733 0.89133 0.81280 1.90563 1.39324 1.53885 1.61517 1.19518 0.92844 0.90527 0.90962 0.91313 1.59247 1.14880 1.48279 1.13087 1.20545 0.94228 0.98311 1.42040 0.94788 1.25750 0.94484 1.03257 0.92880 1.70060 1.11728 1.34333 1.41585 0.84880 0.76088 0.76447 0.79770 1.21052 1.25142 1.17702 1.22561 0.97566 0.98202 1.01055 1.21795 0.92131 1.01562 0.90849 1.60551 1.62665 1.06391 1.01610 1.22111 0.91307 0.95084 0.98761 1.22500 0.98182 1.04806 0.92700 1.20253 0.91916 0.97945 1.07939 0.86231 0.92289 0.91384 0.83317 0.83950 0.86779 0.75688 0.85731 0.84629 0.92465 0.92763 0.89792 0.91082 0.93458 0.83196 0.87814 0.91992 0.88923 0.89202 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -7.86 10.50 -92.46 -0.97 -8.83 16 3 C 0.12 3.04 6.69 22.51 0.15 3.19 16 4 C -0.21 -4.94 9.04 22.37 0.20 -4.73 16 5 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 6 C -0.15 -4.31 8.38 22.28 0.19 -4.13 16 7 C -0.03 -0.94 3.74 -19.88 -0.07 -1.01 16 8 C 0.22 6.08 0.51 2.94 0.00 6.08 16 9 N -0.71 -22.72 3.20 -425.97 -1.36 -24.08 16 10 C 0.51 20.31 5.44 87.66 0.48 20.79 16 11 O -0.57 -25.29 13.18 -3.03 -0.04 -25.33 16 12 C 0.18 7.66 2.51 43.42 0.11 7.77 16 13 H 0.07 2.86 7.20 -2.39 -0.02 2.84 16 14 N -0.83 -34.58 6.52 -174.95 -1.14 -35.72 16 15 C -0.51 -27.80 9.29 25.60 0.24 -27.57 16 16 H 0.03 2.08 7.98 -2.91 -0.02 2.06 16 17 C 0.04 2.08 5.47 84.66 0.46 2.54 16 18 N -0.94 -57.35 13.96 21.44 0.30 -57.05 16 19 Si 1.00 47.26 26.03 68.60 1.79 49.05 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.32 -15.33 7.11 99.48 0.71 -14.63 16 22 H -0.25 -10.93 6.54 99.48 0.65 -10.27 16 23 C -0.15 -4.71 4.21 30.65 0.13 -4.58 16 24 C 0.07 2.10 6.41 86.33 0.55 2.65 16 25 N -0.68 -16.99 6.87 -514.02 -3.53 -20.52 16 26 C 0.06 1.23 6.39 86.32 0.55 1.79 16 27 C -0.14 -2.91 4.89 30.65 0.15 -2.76 16 28 C -0.16 -4.52 9.09 22.36 0.20 -4.31 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.15 2.51 6.30 -2.91 -0.02 2.49 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.11 3.26 6.89 -2.91 -0.02 3.24 16 35 H 0.41 11.98 7.55 -92.70 -0.70 11.28 16 36 H 0.33 11.93 9.06 -89.70 -0.81 11.12 16 37 H 0.34 15.09 8.57 -89.69 -0.77 14.32 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.05 2.12 6.17 -2.39 -0.01 2.11 16 40 H 0.08 2.19 6.42 -2.39 -0.02 2.18 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.90 7.69 -2.38 -0.02 1.88 16 43 H 0.35 6.92 8.86 -89.69 -0.79 6.13 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.60 7.06 -2.39 -0.02 1.59 16 46 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 47 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.13 3.38 6.34 -2.91 -0.02 3.36 16 Total: -1.00 -71.10 371.41 -2.38 -73.48 By element: Atomic # 1 Polarization: 55.82 SS G_CDS: -2.10 Total: 53.72 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.68 Total: -4.72 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -5.73 Total: -137.37 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.01 Total: -34.16 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.79 Total: 49.05 kcal Total: -71.10 -2.38 -73.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221094375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.976 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds