Wall clock time and date at job start Tue Mar 31 2020 18:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00025 * 2 1 4 4 O 1.20828 * 119.99997 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00349 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.45259 * 39.97401 * 5 3 2 7 7 C 1.53035 * 109.46402 * 280.00283 * 5 3 2 8 8 C 1.53117 * 109.31348 * 180.82157 * 7 5 3 9 9 C 1.53125 * 109.15890 * 57.63188 * 8 7 5 10 10 H 1.08995 * 109.50154 * 62.28839 * 9 8 7 11 11 N 1.46902 * 109.50029 * 182.40397 * 9 8 7 12 12 C 1.46903 * 110.99956 * 64.19952 * 11 9 8 13 13 C 1.50708 * 109.46572 * 281.35421 * 12 11 9 14 14 H 1.07995 * 120.00005 * 354.83799 * 13 12 11 15 15 C 1.37876 * 119.99550 * 174.83553 * 13 12 11 16 16 N 1.31512 * 120.00166 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00067 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47368 * 90.00400 * 17 15 13 19 19 H 1.48503 * 109.47106 * 210.00030 * 17 15 13 20 20 H 1.48499 * 109.47401 * 329.99895 * 17 15 13 21 21 C 1.46898 * 110.99653 * 188.14903 * 11 9 8 22 22 C 1.50701 * 109.47050 * 163.70305 * 21 11 9 23 23 C 1.38671 * 120.42230 * 96.05437 * 22 21 11 24 24 C 1.38625 * 118.41833 * 179.97438 * 23 22 21 25 25 C 1.38232 * 119.16487 * 0.02562 * 24 23 22 26 26 N 1.31852 * 120.76244 * 359.97438 * 25 24 23 27 27 C 1.31890 * 121.72380 * 359.70270 * 26 25 24 28 28 C 1.53032 * 109.28082 * 302.34609 * 9 8 7 29 29 N 1.46848 * 109.49820 * 159.92736 * 5 3 2 30 30 H 1.08998 * 109.47208 * 299.99606 * 1 2 3 31 31 H 1.08996 * 109.47119 * 59.99915 * 1 2 3 32 32 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.50467 * 60.85828 * 7 5 3 34 34 H 1.09000 * 109.50505 * 300.78393 * 7 5 3 35 35 H 1.09001 * 109.52719 * 177.53815 * 8 7 5 36 36 H 1.09002 * 109.52471 * 297.73086 * 8 7 5 37 37 H 1.09001 * 109.47392 * 41.35206 * 12 11 9 38 38 H 1.08997 * 109.46896 * 161.35763 * 12 11 9 39 39 H 0.96998 * 120.00553 * 180.02562 * 16 15 13 40 40 H 1.09007 * 109.47260 * 283.69555 * 21 11 9 41 41 H 1.09001 * 109.47328 * 43.69753 * 21 11 9 42 42 H 1.07994 * 120.78963 * 0.02752 * 23 22 21 43 43 H 1.08001 * 120.42115 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.61377 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61737 * 180.31121 * 27 26 25 46 46 H 1.08995 * 109.46584 * 179.19070 * 28 9 8 47 47 H 1.09001 * 109.46102 * 299.16914 * 28 9 8 48 48 H 1.00900 * 110.99207 * 305.83855 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9703 0.5072 -0.6594 7 6 4.0881 1.0517 1.4218 8 6 5.6159 1.1530 1.4221 9 6 6.0288 2.5234 0.8778 10 1 5.6442 3.3057 1.5322 11 7 7.4943 2.6071 0.8209 12 6 8.0407 1.6317 -0.1321 13 6 8.0621 0.2657 0.5042 14 1 7.7845 0.1487 1.5412 15 6 8.4361 -0.8345 -0.2379 16 7 8.4543 -2.0267 0.3171 17 14 8.9155 -0.6321 -2.0319 18 1 10.3758 -0.3807 -2.1288 19 1 8.5759 -1.8705 -2.7778 20 1 8.1758 0.5157 -2.6155 21 6 7.9311 3.9696 0.4882 22 6 9.3920 4.1249 0.8242 23 6 10.3595 3.9562 -0.1548 24 6 11.6908 4.1093 0.2000 25 6 12.0074 4.4222 1.5087 26 7 11.0607 4.5752 2.4135 27 6 9.7839 4.4433 2.1105 28 6 5.4517 2.7036 -0.5280 29 7 3.9878 2.5989 -0.4746 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.7889 0.0623 1.7681 34 1 3.6730 1.8104 2.0853 35 1 5.9885 1.0379 2.4399 36 1 6.0331 0.3692 0.7897 37 1 7.4160 1.6069 -1.0250 38 1 9.0552 1.9208 -0.4063 39 1 8.7178 -2.8007 -0.2048 40 1 7.7823 4.1491 -0.5767 41 1 7.3476 4.6888 1.0629 42 1 10.0823 3.7123 -1.1697 43 1 12.4708 3.9856 -0.5367 44 1 13.0423 4.5435 1.7930 45 1 9.0362 4.5811 2.8776 46 1 5.7318 3.6842 -0.9126 47 1 5.8474 1.9291 -1.1850 48 1 3.5773 2.8084 -1.3722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246552848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:20 Heat of formation + Delta-G solvation = -25.091207 kcal Electronic energy + Delta-G solvation = -29695.765940 eV Core-core repulsion = 25751.368743 eV Total energy + Delta-G solvation = -3944.397197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60857 -39.96506 -38.84486 -36.61757 -35.70940 -32.95182 -32.30668 -31.62559 -31.38443 -29.61014 -28.23558 -27.57380 -25.14904 -23.81216 -23.48272 -23.04224 -21.98045 -21.00631 -20.21176 -18.79754 -17.66920 -17.05740 -16.87048 -16.80015 -16.30868 -16.02888 -15.87096 -15.11596 -14.90669 -14.42483 -14.09836 -13.87758 -13.63335 -13.51703 -13.47201 -13.07775 -12.90719 -12.81425 -12.68178 -12.58029 -12.41922 -12.27978 -12.12980 -11.57846 -11.45291 -11.12231 -11.05366 -10.83366 -10.63977 -10.54122 -10.24995 -10.07907 -9.93503 -9.78447 -9.49730 -9.24663 -9.12821 -8.68119 -8.58436 -8.42247 -7.43910 -6.12725 -4.05957 1.40537 1.57413 2.23352 2.62374 3.17310 3.23473 3.27169 4.03111 4.25839 4.31839 4.66362 4.73298 4.85684 5.00421 5.03119 5.03932 5.08397 5.14169 5.16951 5.24172 5.28991 5.31462 5.35972 5.39978 5.46682 5.57498 5.77471 5.80038 5.90879 5.95134 6.03419 6.06154 6.14053 6.23566 6.34576 6.36513 6.44250 6.56316 6.68173 6.73390 6.91422 6.96192 6.98484 7.32933 7.37603 7.55640 7.76902 7.82656 7.93454 8.25286 8.57655 8.98850 9.47998 10.99304 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.003823 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.963279 B = 7322.498236 C = 8779.958259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.496 6.496 5 C 0.101 3.899 6 H 0.076 0.924 7 C -0.104 4.104 8 C -0.122 4.122 9 C 0.103 3.897 10 H 0.075 0.925 11 N -0.512 5.512 12 C 0.147 3.853 13 C -0.500 4.500 14 H 0.090 0.910 15 C 0.069 3.931 16 N -0.895 5.895 17 Si 0.863 3.137 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.270 1.270 21 C 0.092 3.908 22 C -0.110 4.110 23 C -0.067 4.067 24 C -0.175 4.175 25 C 0.088 3.912 26 N -0.489 5.489 27 C 0.119 3.881 28 C 0.024 3.976 29 N -0.666 5.666 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.001 0.999 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 8.792 -2.636 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.382 6.382 5 C -0.010 4.010 6 H 0.094 0.906 7 C -0.143 4.143 8 C -0.160 4.160 9 C -0.006 4.006 10 H 0.093 0.907 11 N -0.235 5.235 12 C 0.021 3.979 13 C -0.538 4.538 14 H 0.108 0.892 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.691 3.309 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.037 4.037 22 C -0.112 4.112 23 C -0.094 4.094 24 C -0.195 4.195 25 C -0.069 4.069 26 N -0.198 5.198 27 C -0.038 4.038 28 C -0.106 4.106 29 N -0.300 5.300 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.019 0.981 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.365 9.261 -0.719 11.260 hybrid contribution -0.219 -0.640 -3.674 3.735 sum -6.584 8.621 -4.392 11.703 Atomic orbital electron populations 1.23232 0.76686 1.03558 1.02333 1.86555 1.23122 1.33639 1.84159 1.23882 0.92023 0.81230 0.72306 1.90641 1.66892 1.36263 1.44366 1.21128 0.86082 0.92766 1.01035 0.90595 1.21627 0.98570 1.02023 0.92038 1.22149 0.91106 0.98685 1.04009 1.21582 0.86644 0.98780 0.93595 0.90705 1.62270 1.07403 1.02173 1.51652 1.20463 0.94407 0.92445 0.90574 1.21092 1.44266 0.88467 0.99962 0.89170 1.24875 0.95500 0.95368 0.97510 1.69868 1.48403 0.98630 1.36458 0.87058 0.79496 0.77714 0.86654 1.20224 1.21224 1.19465 1.20965 0.91030 0.92966 0.98703 1.20772 0.96557 0.99063 0.94800 1.21487 0.92791 0.95406 0.99707 1.22042 0.96950 1.02312 0.98192 1.22623 0.98715 0.96129 0.89426 1.67658 1.01426 1.14058 1.36620 1.22556 0.92460 0.94321 0.94507 1.22829 0.85888 1.01103 1.00764 1.60030 1.09485 1.26805 1.33640 0.91961 0.92139 0.88167 0.90589 0.91521 0.90916 0.86144 0.98112 0.95906 0.92648 0.94599 0.90305 0.85513 0.85326 0.83357 0.82936 0.91049 0.93128 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.83 10.57 -39.26 -0.41 -5.24 16 3 C 0.46 6.89 7.12 36.00 0.26 7.15 16 4 O -0.50 -8.27 16.28 -18.75 -0.31 -8.57 16 5 C 0.10 1.51 2.94 -68.88 -0.20 1.31 16 6 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 7 C -0.10 -1.60 5.35 -26.65 -0.14 -1.74 16 8 C -0.12 -2.18 4.07 -26.61 -0.11 -2.29 16 9 C 0.10 1.71 2.35 -67.63 -0.16 1.56 16 10 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 11 N -0.51 -9.29 4.41 -229.41 -1.01 -10.30 16 12 C 0.15 3.13 3.42 -4.97 -0.02 3.11 16 13 C -0.50 -12.67 6.98 -34.44 -0.24 -12.91 16 14 H 0.09 2.51 6.69 -52.49 -0.35 2.16 16 15 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 16 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 17 Si 0.86 20.08 27.57 -169.99 -4.69 15.39 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -5.94 6.40 56.52 0.36 -5.58 16 21 C 0.09 1.39 4.49 -4.98 -0.02 1.37 16 22 C -0.11 -1.72 4.99 -104.48 -0.52 -2.24 16 23 C -0.07 -1.02 8.39 -39.28 -0.33 -1.35 16 24 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 25 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 26 N -0.49 -7.91 10.36 -13.25 -0.14 -8.05 16 27 C 0.12 1.87 10.88 -17.55 -0.19 1.68 16 28 C 0.02 0.37 5.22 -3.83 -0.02 0.35 16 29 N -0.67 -9.79 6.10 -107.99 -0.66 -10.45 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.36 7.94 -51.93 -0.41 0.95 16 36 H 0.12 2.58 5.10 -51.93 -0.26 2.32 16 37 H 0.00 0.03 4.04 -51.93 -0.21 -0.18 16 38 H 0.02 0.50 5.42 -51.93 -0.28 0.22 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.52 7.21 -51.93 -0.37 0.14 16 41 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 42 H 0.13 1.79 7.84 -52.49 -0.41 1.38 16 43 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.07 1.01 7.06 -51.93 -0.37 0.64 16 47 H 0.05 0.88 5.93 -51.93 -0.31 0.58 16 48 H 0.34 4.59 8.74 -39.29 -0.34 4.24 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -30.52 376.36 -9.21 -39.73 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.12 Total: 9.32 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.32 Total: -2.59 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -1.03 Total: -53.70 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.72 Total: -13.82 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.69 Total: 15.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.52 -9.21 -39.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246552848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.639 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds