Wall clock time and date at job start Tue Mar 31 2020 17:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00343 * 2 1 4 4 C 1.52997 * 109.47600 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47442 * 179.97438 * 4 3 2 6 6 O 1.42107 * 110.54221 * 68.37216 * 5 4 3 7 7 O 1.42094 * 110.54110 * 291.62225 * 5 4 3 8 8 N 1.65597 * 104.45093 * 179.97438 * 5 4 3 9 9 C 1.46500 * 120.00032 * 89.99830 * 8 5 4 10 10 C 1.50706 * 109.46953 * 264.99801 * 9 8 5 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46512 * 119.99992 * 270.00142 * 8 5 4 19 19 C 1.53011 * 109.46703 * 239.99806 * 18 8 5 20 20 C 1.52994 * 109.45608 * 164.04705 * 19 18 8 21 21 C 1.52979 * 109.51026 * 315.98581 * 20 19 18 22 22 C 1.53015 * 109.46950 * 112.93759 * 21 20 19 23 23 C 1.53005 * 109.42955 * 284.04266 * 22 21 20 24 24 C 1.52985 * 109.48475 * 75.96141 * 23 22 21 25 25 C 1.52991 * 109.50683 * 247.06315 * 24 23 22 26 26 H 1.09001 * 109.47446 * 300.00669 * 1 2 3 27 27 H 1.09002 * 109.46704 * 60.00503 * 1 2 3 28 28 H 1.09000 * 109.47500 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47259 * 59.99141 * 3 2 1 30 30 H 1.09007 * 109.47103 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47058 * 59.99395 * 4 3 2 32 32 H 1.09007 * 109.46637 * 299.99972 * 4 3 2 33 33 H 1.09000 * 109.47175 * 145.00230 * 9 8 5 34 34 H 1.08993 * 109.47452 * 25.00020 * 9 8 5 35 35 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 36 36 H 1.08991 * 109.46868 * 0.02562 * 18 8 5 37 37 H 1.09002 * 109.47216 * 284.04175 * 19 18 8 38 38 H 1.08995 * 109.47424 * 44.04967 * 19 18 8 39 39 H 1.08998 * 109.46264 * 195.97514 * 20 19 18 40 40 H 1.09003 * 109.46074 * 75.99435 * 20 19 18 41 41 H 1.09003 * 109.47466 * 352.93821 * 21 20 19 42 42 H 1.08998 * 109.47574 * 232.93390 * 21 20 19 43 43 H 1.09002 * 109.47532 * 164.05841 * 22 21 20 44 44 H 1.08991 * 109.48291 * 44.03415 * 22 21 20 45 45 H 1.08994 * 109.47098 * 315.95506 * 23 22 21 46 46 H 1.08999 * 109.46252 * 195.96716 * 23 22 21 47 47 H 1.09004 * 109.46334 * 127.05160 * 24 23 22 48 48 H 1.09003 * 109.46495 * 7.07194 * 24 23 22 49 49 H 1.09006 * 109.47418 * 284.01796 * 25 24 23 50 50 H 1.09002 * 109.48121 * 164.00958 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2733 2.8417 -0.0014 6 8 4.0287 3.4971 1.2355 7 8 4.0277 3.4963 -1.2384 8 7 5.9064 2.5670 -0.0013 9 6 6.6287 2.4448 -1.2700 10 6 6.7473 0.9893 -1.6424 11 1 6.3263 0.2312 -0.9987 12 6 7.3923 0.6258 -2.8055 13 7 7.4953 -0.6443 -3.1307 14 14 8.1197 1.9371 -3.9194 15 1 7.1010 2.3648 -4.9114 16 1 8.5360 3.1052 -3.1022 17 1 9.3007 1.3838 -4.6296 18 6 6.6288 2.4460 1.2675 19 6 7.7036 3.5321 1.3480 20 6 8.1822 3.6692 2.7946 21 6 6.9760 3.6554 3.7353 22 6 7.0072 2.3840 4.5861 23 6 6.5617 1.1920 3.7366 24 6 7.6968 0.7832 2.7959 25 6 7.2890 1.0680 1.3491 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8567 0.6438 -0.8908 32 1 3.8574 0.6435 0.8892 33 1 7.6246 2.8750 -1.1640 34 1 6.0845 2.9764 -2.0506 35 1 7.9488 -0.9001 -3.9492 36 1 5.9303 2.5634 2.0959 37 1 8.5449 3.2585 0.7112 38 1 7.2868 4.4813 1.0116 39 1 8.7228 4.6085 2.9108 40 1 8.8429 2.8373 3.0389 41 1 6.0574 3.6777 3.1488 42 1 7.0127 4.5290 4.3862 43 1 6.3325 2.4979 5.4347 44 1 8.0210 2.2136 4.9481 45 1 5.6864 1.4709 3.1500 46 1 6.3106 0.3552 4.3883 47 1 7.9001 -0.2812 2.9132 48 1 8.5934 1.3532 3.0394 49 1 6.5842 0.3070 1.0137 50 1 8.1732 1.0504 0.7120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259969043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:23 Heat of formation + Delta-G solvation = -117.505182 kcal Electronic energy + Delta-G solvation = -29849.500316 eV Core-core repulsion = 26004.246949 eV Total energy + Delta-G solvation = -3845.253368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.41188 -37.92363 -36.69346 -35.60583 -35.40055 -32.66591 -32.48318 -31.70865 -31.08430 -27.89233 -26.56111 -25.62806 -25.29574 -23.32401 -22.32795 -21.24229 -20.43477 -19.18178 -18.20351 -17.54713 -16.86699 -16.62296 -16.36153 -15.83192 -15.52948 -14.98691 -14.82112 -14.47375 -14.20916 -13.90348 -13.86294 -13.71552 -13.41123 -13.02395 -12.79812 -12.65759 -12.17561 -12.09527 -11.91821 -11.76202 -11.72064 -11.57233 -11.43507 -11.36443 -11.28358 -11.11544 -10.93621 -10.80620 -10.69399 -10.57091 -10.48871 -10.31531 -10.19110 -10.13415 -9.75651 -9.64972 -9.48192 -9.23732 -8.64178 -8.07381 -6.15667 -4.16056 0.70973 3.12492 3.27324 3.34067 3.37048 3.73712 4.33487 4.35418 4.59216 4.76977 4.82623 4.95046 5.05666 5.06335 5.15772 5.17466 5.26360 5.28414 5.30782 5.40703 5.42181 5.48844 5.57159 5.60008 5.61561 5.67671 5.77358 5.87726 6.00924 6.10920 6.15999 6.17525 6.28245 6.29922 6.35396 6.39031 6.42393 6.59428 6.65284 6.72533 6.85052 6.92122 7.02453 7.06793 7.20754 7.40760 7.55072 8.40026 8.87006 9.45137 10.96199 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007309 B = 0.007118 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.817174 B = 3932.957149 C = 6235.709892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.077 3.923 4 C -0.638 4.638 5 S 2.613 3.387 6 O -0.971 6.971 7 O -0.955 6.955 8 N -0.971 5.971 9 C 0.211 3.789 10 C -0.543 4.543 11 H 0.084 0.916 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.866 3.134 15 H -0.273 1.273 16 H -0.263 1.263 17 H -0.286 1.286 18 C 0.137 3.863 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.122 4.122 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 4.536 12.284 14.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C -0.001 4.001 4 C -0.765 4.765 5 S 2.705 3.295 6 O -0.962 6.962 7 O -0.945 6.945 8 N -0.808 5.808 9 C 0.087 3.913 10 C -0.582 4.582 11 H 0.102 0.898 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.693 3.307 15 H -0.198 1.198 16 H -0.188 1.188 17 H -0.212 1.212 18 C 0.032 3.968 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.175 4.175 22 C -0.154 4.154 23 C -0.170 4.170 24 C -0.166 4.166 25 C -0.161 4.161 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.444 5.074 12.107 14.211 hybrid contribution 0.374 -0.181 -0.861 0.956 sum -5.070 4.894 11.245 13.271 Atomic orbital electron populations 1.22811 0.81156 1.02973 1.00139 1.87989 1.19531 1.26801 1.95384 1.22073 0.90774 0.86300 1.00934 1.30991 1.03890 1.28003 1.13601 1.04705 0.74245 0.76662 0.73873 1.93527 1.85158 1.71835 1.45652 1.93560 1.84573 1.71516 1.44893 1.57243 1.23305 1.87442 1.12831 1.19625 0.93373 0.98221 0.80033 1.21534 1.38021 0.91113 1.07509 0.89764 1.24838 0.95437 0.95060 0.97260 1.69892 1.42834 1.15509 1.24798 0.86995 0.79384 0.82593 0.81741 1.19805 1.18756 1.21159 1.21443 0.95023 0.95379 0.84975 1.21920 0.99094 0.98847 0.96379 1.21833 0.97845 1.01708 0.94765 1.21924 1.00050 0.97267 0.98230 1.21695 1.01005 0.95023 0.97682 1.21878 0.99357 0.97626 0.98156 1.21914 0.98404 1.00852 0.95453 1.22024 1.02614 0.96327 0.95086 0.93965 0.93789 0.89388 0.92337 0.92009 0.82786 0.84837 0.94100 0.93783 0.92528 0.87389 0.91094 0.91957 0.92516 0.90754 0.89858 0.92596 0.92595 0.92046 0.91175 0.92506 0.92354 0.91166 0.90979 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.79 10.70 -35.23 -0.38 -6.17 16 3 C 0.08 1.15 5.95 37.16 0.22 1.37 16 4 C -0.64 -10.54 6.55 37.16 0.24 -10.30 16 5 S 2.61 47.93 5.41 -107.50 -0.58 47.35 16 6 O -0.97 -17.88 16.57 -57.54 -0.95 -18.83 16 7 O -0.96 -20.37 16.53 -57.54 -0.95 -21.32 16 8 N -0.97 -18.54 2.66 -108.55 -0.29 -18.83 16 9 C 0.21 4.69 4.18 -5.19 -0.02 4.66 16 10 C -0.54 -13.66 8.57 -34.44 -0.30 -13.96 16 11 H 0.08 2.22 6.75 -52.49 -0.35 1.86 16 12 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 14 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 18 C 0.14 2.27 1.86 -67.91 -0.13 2.15 16 19 C -0.12 -1.88 4.58 -26.73 -0.12 -2.00 16 20 C -0.12 -1.54 5.48 -26.75 -0.15 -1.69 16 21 C -0.14 -1.68 5.47 -26.73 -0.15 -1.83 16 22 C -0.12 -1.29 5.59 -26.72 -0.15 -1.44 16 23 C -0.13 -1.63 5.47 -26.74 -0.15 -1.78 16 24 C -0.13 -1.71 5.48 -26.74 -0.15 -1.85 16 25 C -0.12 -2.01 3.85 -26.73 -0.10 -2.11 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 31 H 0.15 2.82 8.14 -51.92 -0.42 2.39 16 32 H 0.13 2.00 8.14 -51.92 -0.42 1.58 16 33 H 0.04 0.90 5.90 -51.93 -0.31 0.59 16 34 H 0.04 1.03 6.24 -51.93 -0.32 0.71 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.11 1.69 1.56 -51.93 -0.08 1.61 16 37 H 0.07 1.12 7.14 -51.93 -0.37 0.75 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.88 4.69 -51.93 -0.24 0.63 16 41 H 0.08 1.18 5.47 -51.93 -0.28 0.90 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.62 7.47 -51.93 -0.39 0.24 16 45 H 0.07 0.94 5.47 -51.93 -0.28 0.65 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.87 4.69 -51.93 -0.24 0.62 16 49 H 0.07 1.30 6.97 -51.93 -0.36 0.94 16 50 H 0.08 1.50 7.52 -51.93 -0.39 1.11 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -30.75 377.59 -9.58 -40.33 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.30 Total: 6.23 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 0.08 Total: -25.39 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.48 Total: -43.69 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -2.28 Total: -46.32 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 47.93 SS G_CDS: -0.58 Total: 47.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.75 -9.58 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259969043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.176 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds