Wall clock time and date at job start Tue Mar 31 2020 17:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00343 * 2 1 4 4 C 1.52997 * 109.47600 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47442 * 179.97438 * 4 3 2 6 6 O 1.42107 * 110.54221 * 68.37216 * 5 4 3 7 7 O 1.42094 * 110.54110 * 291.62225 * 5 4 3 8 8 N 1.65597 * 104.45093 * 179.97438 * 5 4 3 9 9 C 1.46500 * 120.00032 * 89.99830 * 8 5 4 10 10 C 1.50706 * 109.46953 * 264.99801 * 9 8 5 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46512 * 119.99992 * 270.00142 * 8 5 4 19 19 C 1.53011 * 109.46703 * 239.99806 * 18 8 5 20 20 C 1.52994 * 109.45608 * 164.04705 * 19 18 8 21 21 C 1.52979 * 109.51026 * 315.98581 * 20 19 18 22 22 C 1.53015 * 109.46950 * 112.93759 * 21 20 19 23 23 C 1.53005 * 109.42955 * 284.04266 * 22 21 20 24 24 C 1.52985 * 109.48475 * 75.96141 * 23 22 21 25 25 C 1.52991 * 109.50683 * 247.06315 * 24 23 22 26 26 H 1.09001 * 109.47446 * 300.00669 * 1 2 3 27 27 H 1.09002 * 109.46704 * 60.00503 * 1 2 3 28 28 H 1.09000 * 109.47500 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47259 * 59.99141 * 3 2 1 30 30 H 1.09007 * 109.47103 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47058 * 59.99395 * 4 3 2 32 32 H 1.09007 * 109.46637 * 299.99972 * 4 3 2 33 33 H 1.09000 * 109.47175 * 145.00230 * 9 8 5 34 34 H 1.08993 * 109.47452 * 25.00020 * 9 8 5 35 35 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 36 36 H 1.08991 * 109.46868 * 0.02562 * 18 8 5 37 37 H 1.09002 * 109.47216 * 284.04175 * 19 18 8 38 38 H 1.08995 * 109.47424 * 44.04967 * 19 18 8 39 39 H 1.08998 * 109.46264 * 195.97514 * 20 19 18 40 40 H 1.09003 * 109.46074 * 75.99435 * 20 19 18 41 41 H 1.09003 * 109.47466 * 352.93821 * 21 20 19 42 42 H 1.08998 * 109.47574 * 232.93390 * 21 20 19 43 43 H 1.09002 * 109.47532 * 164.05841 * 22 21 20 44 44 H 1.08991 * 109.48291 * 44.03415 * 22 21 20 45 45 H 1.08994 * 109.47098 * 315.95506 * 23 22 21 46 46 H 1.08999 * 109.46252 * 195.96716 * 23 22 21 47 47 H 1.09004 * 109.46334 * 127.05160 * 24 23 22 48 48 H 1.09003 * 109.46495 * 7.07194 * 24 23 22 49 49 H 1.09006 * 109.47418 * 284.01796 * 25 24 23 50 50 H 1.09002 * 109.48121 * 164.00958 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2733 2.8417 -0.0014 6 8 4.0287 3.4971 1.2355 7 8 4.0277 3.4963 -1.2384 8 7 5.9064 2.5670 -0.0013 9 6 6.6287 2.4448 -1.2700 10 6 6.7473 0.9893 -1.6424 11 1 6.3263 0.2312 -0.9987 12 6 7.3923 0.6258 -2.8055 13 7 7.4953 -0.6443 -3.1307 14 14 8.1197 1.9371 -3.9194 15 1 7.1010 2.3648 -4.9114 16 1 8.5360 3.1052 -3.1022 17 1 9.3007 1.3838 -4.6296 18 6 6.6288 2.4460 1.2675 19 6 7.7036 3.5321 1.3480 20 6 8.1822 3.6692 2.7946 21 6 6.9760 3.6554 3.7353 22 6 7.0072 2.3840 4.5861 23 6 6.5617 1.1920 3.7366 24 6 7.6968 0.7832 2.7959 25 6 7.2890 1.0680 1.3491 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8567 0.6438 -0.8908 32 1 3.8574 0.6435 0.8892 33 1 7.6246 2.8750 -1.1640 34 1 6.0845 2.9764 -2.0506 35 1 7.9488 -0.9001 -3.9492 36 1 5.9303 2.5634 2.0959 37 1 8.5449 3.2585 0.7112 38 1 7.2868 4.4813 1.0116 39 1 8.7228 4.6085 2.9108 40 1 8.8429 2.8373 3.0389 41 1 6.0574 3.6777 3.1488 42 1 7.0127 4.5290 4.3862 43 1 6.3325 2.4979 5.4347 44 1 8.0210 2.2136 4.9481 45 1 5.6864 1.4709 3.1500 46 1 6.3106 0.3552 4.3883 47 1 7.9001 -0.2812 2.9132 48 1 8.5934 1.3532 3.0394 49 1 6.5842 0.3070 1.0137 50 1 8.1732 1.0504 0.7120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259969043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:22 Heat of formation + Delta-G solvation = -137.871741 kcal Electronic energy + Delta-G solvation = -29850.383477 eV Core-core repulsion = 26004.246949 eV Total energy + Delta-G solvation = -3846.136528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60735 -39.01930 -38.25705 -37.11635 -36.88127 -34.52870 -33.64342 -32.95759 -32.42422 -29.66920 -27.49086 -26.77566 -26.55627 -24.67053 -23.91986 -22.42653 -21.54565 -20.49708 -19.64153 -19.00264 -18.79525 -17.91971 -17.67892 -17.12562 -16.81639 -16.32486 -16.10258 -15.97428 -15.61003 -15.10873 -14.99995 -14.87561 -14.63783 -14.53539 -14.17597 -14.01889 -13.79128 -13.45619 -13.28326 -13.24486 -13.18214 -12.96568 -12.75768 -12.73150 -12.45861 -12.41614 -12.32417 -12.20784 -12.00148 -11.93132 -11.83499 -11.77044 -11.61356 -11.42876 -11.14160 -10.80189 -10.72558 -10.69113 -10.46773 -9.67155 -8.24400 -6.26707 -0.77475 1.36441 1.40585 1.47058 1.65321 2.36904 2.53211 2.99856 3.10584 3.13265 3.53602 3.65771 3.70978 4.02431 4.03668 4.04704 4.16612 4.29327 4.33067 4.35656 4.37418 4.42452 4.45707 4.48475 4.52465 4.52957 4.75068 4.79996 4.84594 4.91708 5.00704 5.08781 5.12586 5.15766 5.18508 5.26390 5.28266 5.36488 5.40225 5.44714 5.52694 5.57690 5.67141 5.73142 5.78295 5.90034 6.03999 6.35406 6.79135 7.36831 8.90159 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007309 B = 0.007118 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.817174 B = 3932.957149 C = 6235.709892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.406 6.406 3 C 0.069 3.931 4 C -0.628 4.628 5 S 2.622 3.378 6 O -0.970 6.970 7 O -0.986 6.986 8 N -0.977 5.977 9 C 0.219 3.781 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.024 3.976 13 N -0.938 5.938 14 Si 0.916 3.084 15 H -0.274 1.274 16 H -0.244 1.244 17 H -0.283 1.283 18 C 0.131 3.869 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.147 0.853 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 5.758 14.419 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.326 6.326 3 C -0.009 4.009 4 C -0.757 4.757 5 S 2.716 3.284 6 O -0.960 6.960 7 O -0.977 6.977 8 N -0.814 5.814 9 C 0.094 3.906 10 C -0.567 4.567 11 H 0.081 0.919 12 C -0.175 4.175 13 N -0.578 5.578 14 Si 0.740 3.260 15 H -0.200 1.200 16 H -0.167 1.167 17 H -0.209 1.209 18 C 0.026 3.974 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.176 4.176 22 C -0.150 4.150 23 C -0.171 4.171 24 C -0.160 4.160 25 C -0.155 4.155 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.165 0.835 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.066 0.934 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.588 6.334 14.268 16.581 hybrid contribution 0.303 -0.626 -1.452 1.610 sum -5.285 5.708 12.816 14.992 Atomic orbital electron populations 1.23113 0.78832 1.04557 1.01596 1.87936 1.22131 1.26831 1.95655 1.22204 0.89277 0.86838 1.02547 1.30797 1.05724 1.25932 1.13206 1.04343 0.73857 0.76970 0.73181 1.93521 1.85019 1.72317 1.45141 1.93516 1.84948 1.72929 1.46308 1.57231 1.23799 1.87665 1.12693 1.19341 0.93963 0.95939 0.81315 1.21738 1.36116 0.92309 1.06508 0.91881 1.25556 0.96377 0.96664 0.98941 1.70015 1.44767 1.17432 1.25628 0.86179 0.78638 0.80959 0.80181 1.19993 1.16697 1.20915 1.21736 0.95723 0.95817 0.84113 1.21936 0.98193 0.97820 0.98498 1.21827 0.98230 1.02966 0.92602 1.21922 0.98636 0.98723 0.98287 1.21693 1.02279 0.93537 0.97518 1.21887 0.98180 0.98929 0.98135 1.21886 0.99484 1.01371 0.93284 1.21901 1.00780 0.95784 0.97012 0.92002 0.92837 0.87865 0.89815 0.91406 0.84954 0.83509 0.93422 0.94642 0.92639 0.85969 0.92082 0.92557 0.90909 0.89883 0.92040 0.90966 0.91222 0.90480 0.92578 0.91040 0.92091 0.89712 0.93362 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -12.06 10.70 -148.98 -1.59 -13.66 16 3 C 0.07 2.00 5.95 71.98 0.43 2.43 16 4 C -0.63 -20.89 6.55 71.98 0.47 -20.42 16 5 S 2.62 96.22 5.41 -56.49 -0.31 95.91 16 6 O -0.97 -34.77 16.57 -127.65 -2.11 -36.89 16 7 O -0.99 -42.40 16.53 -127.65 -2.11 -44.51 16 8 N -0.98 -37.69 2.66 -497.36 -1.32 -39.01 16 9 C 0.22 9.86 4.18 85.63 0.36 10.22 16 10 C -0.53 -27.34 8.57 25.60 0.22 -27.12 16 11 H 0.06 3.48 6.75 -2.91 -0.02 3.46 16 12 C 0.02 1.29 5.47 84.66 0.46 1.75 16 13 N -0.94 -55.57 13.96 21.45 0.30 -55.28 16 14 Si 0.92 42.41 27.47 68.60 1.88 44.30 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 C 0.13 4.29 1.86 45.00 0.08 4.37 16 19 C -0.13 -3.71 4.58 30.60 0.14 -3.57 16 20 C -0.12 -2.66 5.48 30.59 0.17 -2.49 16 21 C -0.14 -3.00 5.47 30.59 0.17 -2.83 16 22 C -0.11 -2.13 5.59 30.60 0.17 -1.96 16 23 C -0.13 -3.00 5.47 30.59 0.17 -2.83 16 24 C -0.12 -3.09 5.48 30.59 0.17 -2.93 16 25 C -0.12 -3.86 3.85 30.59 0.12 -3.74 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.13 5.05 8.14 -2.39 -0.02 5.03 16 32 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 33 H 0.05 2.08 5.90 -2.39 -0.01 2.07 16 34 H 0.04 1.68 6.24 -2.39 -0.01 1.66 16 35 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 36 H 0.12 3.72 1.56 -2.39 0.00 3.72 16 37 H 0.06 1.90 7.14 -2.39 -0.02 1.88 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.72 4.69 -2.39 -0.01 1.71 16 41 H 0.06 1.62 5.47 -2.39 -0.01 1.61 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.25 7.47 -2.39 -0.02 1.23 16 45 H 0.06 1.42 5.47 -2.39 -0.01 1.40 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.08 1.90 4.69 -2.39 -0.01 1.89 16 49 H 0.05 1.81 6.97 -2.38 -0.02 1.79 16 50 H 0.05 2.10 7.52 -2.39 -0.02 2.08 16 Total: -1.00 -66.91 377.59 -0.02 -66.93 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.87 Total: 29.78 kcal Atomic # 6 Polarization: -51.94 SS G_CDS: 4.37 Total: -47.57 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -1.02 Total: -94.29 kcal Atomic # 8 Polarization: -89.24 SS G_CDS: -5.82 Total: -95.06 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.30 kcal Atomic # 16 Polarization: 96.22 SS G_CDS: -0.31 Total: 95.91 kcal Total: -66.91 -0.02 -66.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259969043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.941 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds