Wall clock time and date at job start Tue Mar 31 2020 17:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99898 * 2 1 4 4 C 1.50699 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.38360 * 120.34288 * 269.72650 * 4 3 2 6 6 N 1.31931 * 121.07482 * 179.72726 * 5 4 3 7 7 C 1.31695 * 121.88115 * 0.53516 * 6 5 4 8 8 C 1.39530 * 120.56427 * 359.75293 * 7 6 5 9 9 C 1.47842 * 120.55646 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99829 * 41.01907 * 9 8 7 11 11 N 1.34780 * 119.99912 * 221.01915 * 9 8 7 12 12 C 1.46926 * 120.63031 * 5.55486 * 11 9 8 13 13 C 1.53621 * 108.54193 * 126.36942 * 12 11 9 14 14 C 1.53036 * 109.23989 * 54.85923 * 13 12 11 15 15 C 1.53043 * 109.53791 * 298.50965 * 14 13 12 16 16 H 1.09004 * 109.49599 * 301.41186 * 15 14 13 17 17 C 1.53001 * 109.52489 * 181.33619 * 15 14 13 18 18 N 1.46498 * 109.47369 * 175.14622 * 17 15 14 19 19 C 1.36938 * 120.00289 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99469 * 0.02562 * 19 18 17 21 21 C 1.38806 * 119.99870 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00450 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99898 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47641 * 59.99902 * 23 21 19 25 25 H 1.48503 * 109.47196 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47240 * 300.00079 * 23 21 19 27 27 C 1.46918 * 120.63066 * 185.84106 * 11 9 8 28 28 C 1.38353 * 120.35238 * 90.00314 * 4 3 2 29 29 H 1.08995 * 109.47491 * 300.00024 * 1 2 3 30 30 H 1.09005 * 109.47325 * 59.99779 * 1 2 3 31 31 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47088 * 300.00085 * 3 2 1 33 33 H 1.09006 * 109.47114 * 59.99996 * 3 2 1 34 34 H 1.07994 * 119.46631 * 359.97438 * 5 4 3 35 35 H 1.07988 * 119.72197 * 179.73105 * 7 6 5 36 36 H 1.08997 * 109.58957 * 246.20881 * 12 11 9 37 37 H 1.09011 * 109.58644 * 6.62757 * 12 11 9 38 38 H 1.09000 * 109.63602 * 294.86735 * 13 12 11 39 39 H 1.09002 * 109.46087 * 174.74000 * 13 12 11 40 40 H 1.09005 * 109.45927 * 178.49326 * 14 13 12 41 41 H 1.09002 * 109.45528 * 58.52556 * 14 13 12 42 42 H 1.08999 * 109.47109 * 295.14679 * 17 15 14 43 43 H 1.09001 * 109.47615 * 55.14246 * 17 15 14 44 44 H 0.97004 * 119.99806 * 359.97438 * 18 17 15 45 45 H 0.96997 * 120.00232 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58745 * 353.36641 * 27 11 9 47 47 H 1.08994 * 109.58920 * 113.65282 * 27 11 9 48 48 H 1.08000 * 120.85367 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2102 1.1367 1.1931 6 7 5.5249 1.0272 1.2095 7 6 6.2320 0.9709 0.0999 8 6 5.6039 1.0209 -1.1451 9 6 6.3979 0.9583 -2.3906 10 8 7.3368 0.1909 -2.4748 11 7 6.0807 1.7521 -3.4326 12 6 5.0279 2.7690 -3.3057 13 6 5.6068 4.1271 -3.7305 14 6 6.1967 4.0059 -5.1374 15 6 7.3322 2.9799 -5.1297 16 1 8.0980 3.2901 -4.4186 17 6 7.9437 2.8834 -6.5288 18 7 9.1033 1.9887 -6.4943 19 6 9.8158 1.7469 -7.6385 20 1 9.5231 2.2160 -8.5661 21 6 10.9149 0.8997 -7.6056 22 7 11.2719 0.3283 -6.4749 23 14 11.8872 0.5703 -9.1662 24 1 12.4351 1.8484 -9.6872 25 1 13.0038 -0.3617 -8.8663 26 1 10.9955 -0.0382 -10.1859 27 6 6.7767 1.6126 -4.7189 28 6 4.2089 1.1315 -1.1948 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.6696 1.1843 2.1268 35 1 7.3071 0.8857 0.1539 36 1 4.1886 2.5086 -3.9504 37 1 4.6930 2.8210 -2.2696 38 1 6.3888 4.4264 -3.0327 39 1 4.8142 4.8754 -3.7316 40 1 6.5846 4.9745 -5.4531 41 1 5.4198 3.6826 -5.8302 42 1 7.2016 2.4896 -7.2233 43 1 8.2587 3.8739 -6.8569 44 1 9.3664 1.5677 -5.6610 45 1 12.0397 -0.2640 -6.4520 46 1 7.5962 0.9014 -4.6157 47 1 6.0778 1.2574 -5.4760 48 1 3.6900 1.1732 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265613972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:57 Heat of formation + Delta-G solvation = -54.355383 kcal Electronic energy + Delta-G solvation = -28643.530604 eV Core-core repulsion = 24697.864416 eV Total energy + Delta-G solvation = -3945.666187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06615 -40.64993 -38.91591 -38.57726 -36.68413 -34.84594 -33.97890 -33.16659 -32.99984 -31.34790 -28.41512 -27.46654 -27.01307 -26.39906 -25.05252 -24.84754 -23.53906 -22.70399 -21.51586 -20.29932 -19.18625 -18.47509 -18.12792 -17.82752 -17.35495 -17.17002 -16.71253 -16.42490 -16.30513 -15.97608 -15.77275 -15.41954 -15.28363 -15.08281 -14.81550 -14.43396 -14.26140 -14.06895 -13.98008 -13.94994 -13.76499 -13.28750 -13.03527 -12.92439 -12.84233 -12.67374 -12.32591 -12.22278 -12.13439 -11.94459 -11.86507 -11.61544 -11.35490 -11.33071 -10.95278 -10.80951 -10.68039 -10.49734 -10.25235 -9.71731 -9.01847 -7.94756 -5.25581 -0.40125 -0.02043 1.44511 1.49006 1.53168 1.55337 1.82810 2.46290 2.55145 3.07706 3.21322 3.37888 3.43402 3.63691 3.69399 3.73739 3.82766 3.86109 3.88955 4.02369 4.06088 4.21594 4.28292 4.33134 4.41595 4.54331 4.55932 4.57247 4.61971 4.66259 4.74887 4.76986 4.85277 4.86933 4.89489 4.95738 5.01269 5.03923 5.10264 5.21245 5.33338 5.40631 5.45915 5.47670 5.50726 6.23340 6.25316 6.26376 6.74433 6.97369 7.30855 8.07880 8.29495 9.28563 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.002451 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.702782 B =11422.932018 C =11950.420916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.107 3.893 4 C -0.144 4.144 5 C 0.138 3.862 6 N -0.503 5.503 7 C 0.144 3.856 8 C -0.187 4.187 9 C 0.553 3.447 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.092 3.908 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.095 4.095 16 H 0.048 0.952 17 C 0.158 3.842 18 N -0.749 5.749 19 C -0.246 4.246 20 H 0.081 0.919 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.274 1.274 25 H -0.298 1.298 26 H -0.275 1.275 27 C 0.127 3.873 28 C -0.018 4.018 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.191 0.809 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.030 0.970 43 H 0.027 0.973 44 H 0.370 0.630 45 H 0.250 0.750 46 H 0.050 0.950 47 H 0.080 0.920 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.181 9.323 14.877 34.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.031 3.969 4 C -0.145 4.145 5 C -0.019 4.019 6 N -0.211 5.211 7 C -0.013 4.013 8 C -0.192 4.192 9 C 0.341 3.659 10 O -0.462 6.462 11 N -0.329 5.329 12 C -0.029 4.029 13 C -0.165 4.165 14 C -0.143 4.143 15 C -0.114 4.114 16 H 0.067 0.933 17 C 0.031 3.969 18 N -0.392 5.392 19 C -0.378 4.378 20 H 0.099 0.901 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.807 3.193 24 H -0.200 1.200 25 H -0.225 1.225 26 H -0.201 1.201 27 C 0.005 3.995 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.208 0.792 35 H 0.170 0.830 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.201 0.799 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -28.127 8.766 15.437 33.261 hybrid contribution 1.099 -0.667 -1.334 1.853 sum -27.028 8.099 14.103 31.544 Atomic orbital electron populations 1.22936 0.78957 1.03661 1.01465 1.87945 1.21756 1.28256 1.95758 1.21390 0.86351 0.85238 1.03972 1.20802 0.97399 1.03118 0.93228 1.23501 0.89206 0.89891 0.99297 1.67867 1.09307 1.13684 1.30196 1.22892 1.00753 0.91095 0.86572 1.20743 0.95605 1.08896 0.93966 1.18667 0.83217 0.80207 0.83802 1.90852 1.31172 1.41279 1.82880 1.48146 1.38259 1.35496 1.11025 1.22545 0.89503 0.86883 1.03986 1.21993 1.01627 0.96873 0.96007 1.21516 0.96511 0.98167 0.98146 1.21547 0.98151 0.95467 0.96278 0.93347 1.20852 0.88247 0.92923 0.94846 1.42695 1.32532 1.55145 1.08839 1.19646 1.06769 1.21583 0.89770 0.90140 1.25691 1.00716 1.00719 1.00239 1.69868 1.29514 1.35975 1.27043 0.85143 0.77812 0.77548 0.78837 1.20031 1.22465 1.20078 1.21465 0.96511 0.97765 0.83779 1.21955 0.91152 0.90852 1.00424 0.92307 0.92652 0.89418 0.89720 0.89150 0.79181 0.83016 0.88041 0.87953 0.92839 0.86708 0.90583 0.89788 0.95219 0.95493 0.79850 0.94142 0.93113 0.90216 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.42 -5.54 10.69 -148.98 -1.59 -7.13 16 3 C 0.11 0.85 6.08 71.24 0.43 1.29 16 4 C -0.14 -1.99 5.52 -19.81 -0.11 -2.10 16 5 C 0.14 2.21 10.85 84.71 0.92 3.13 16 6 N -0.50 -11.57 10.35 -194.75 -2.01 -13.59 16 7 C 0.14 3.78 10.83 85.03 0.92 4.70 16 8 C -0.19 -4.71 5.11 -19.99 -0.10 -4.81 16 9 C 0.55 18.35 7.34 86.79 0.64 18.98 16 10 O -0.58 -26.27 16.37 -3.87 -0.06 -26.34 16 11 N -0.60 -16.64 2.97 -821.50 -2.44 -19.08 16 12 C 0.09 1.46 4.98 86.51 0.43 1.89 16 13 C -0.13 -1.97 6.10 30.82 0.19 -1.78 16 14 C -0.11 -2.18 5.17 30.62 0.16 -2.02 16 15 C -0.09 -3.07 2.37 -10.72 -0.03 -3.10 16 16 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 17 C 0.16 6.34 5.66 86.38 0.49 6.83 16 18 N -0.75 -40.31 5.38 -343.46 -1.85 -42.16 16 19 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 22 N -0.97 -63.93 13.06 21.65 0.28 -63.65 16 23 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 26 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 27 C 0.13 4.39 5.52 86.36 0.48 4.87 16 28 C -0.02 -0.31 7.20 22.73 0.16 -0.14 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 33 H 0.09 0.29 8.09 -2.38 -0.02 0.27 16 34 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.15 4.27 8.06 -2.92 -0.02 4.25 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.30 4.76 -2.38 -0.01 1.29 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.37 21.98 6.89 -92.71 -0.64 21.34 16 45 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 46 H 0.05 2.33 6.20 -2.39 -0.01 2.32 16 47 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.16 2.04 6.73 -2.91 -0.02 2.02 16 Total: -1.00 -84.51 389.62 1.81 -82.70 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.32 Total: 27.93 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.13 Total: 11.18 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -6.01 Total: -138.47 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.66 Total: -33.47 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -84.51 1.81 -82.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265613972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.343 kcal (2) G-P(sol) polarization free energy of solvation -84.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds