Wall clock time and date at job start Tue Mar 31 2020 17:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35671 * 117.00020 * 2 1 4 4 C 1.39284 * 119.61484 * 179.97438 * 3 2 1 5 5 C 1.38330 * 119.30349 * 180.02562 * 4 3 2 6 6 C 1.38782 * 118.56170 * 359.73461 * 5 4 3 7 7 C 1.39128 * 119.18158 * 0.52535 * 6 5 4 8 8 C 1.48159 * 119.68602 * 179.73493 * 7 6 5 9 9 O 1.21514 * 120.00229 * 359.73172 * 8 7 6 10 10 N 1.34773 * 119.99883 * 179.72583 * 8 7 6 11 11 C 1.46505 * 120.00153 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47363 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46705 * 185.07286 * 13 12 11 15 15 H 1.09001 * 109.87191 * 55.93356 * 14 13 12 16 16 C 1.54315 * 109.88580 * 294.91218 * 14 13 12 17 17 C 1.55154 * 102.94605 * 218.23618 * 16 14 13 18 18 C 1.54914 * 101.61366 * 35.48519 * 17 16 14 19 19 N 1.47020 * 110.00881 * 177.02589 * 14 13 12 20 20 C 1.36940 * 125.65012 * 298.47173 * 19 14 13 21 21 H 1.08004 * 119.99669 * 345.38451 * 20 19 14 22 22 C 1.38816 * 120.00204 * 165.39193 * 20 19 14 23 23 N 1.31618 * 119.99783 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.46768 * 89.99781 * 24 22 20 26 26 H 1.48491 * 109.47009 * 209.99665 * 24 22 20 27 27 H 1.48497 * 109.46946 * 330.00492 * 24 22 20 28 28 N 1.31903 * 119.61750 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47348 * 300.00772 * 1 2 3 30 30 H 1.09002 * 109.46688 * 60.00599 * 1 2 3 31 31 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.34814 * 0.03919 * 4 3 2 33 33 H 1.08000 * 120.71832 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.40596 * 180.26434 * 6 5 4 35 35 H 0.97002 * 119.99889 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47134 * 60.00202 * 11 10 8 37 37 H 1.09003 * 109.46889 * 300.00606 * 11 10 8 38 38 H 1.09002 * 109.47442 * 59.99800 * 12 11 10 39 39 H 1.09003 * 109.47115 * 299.99858 * 12 11 10 40 40 H 1.08996 * 109.47260 * 65.07469 * 13 12 11 41 41 H 1.09000 * 109.47064 * 305.07399 * 13 12 11 42 42 H 1.09000 * 110.71933 * 99.87203 * 16 14 13 43 43 H 1.09001 * 110.87366 * 336.67498 * 16 14 13 44 44 H 1.09003 * 111.00564 * 153.57328 * 17 16 14 45 45 H 1.08998 * 111.00411 * 277.39167 * 17 16 14 46 46 H 1.08992 * 110.36894 * 81.84879 * 18 17 16 47 47 H 1.08999 * 110.36691 * 204.17251 * 18 17 16 48 48 H 0.96995 * 119.99822 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2666 3.6486 -0.0046 7 6 1.8819 3.5136 0.0005 8 6 1.0268 4.7235 0.0005 9 8 1.5354 5.8271 0.0010 10 7 -0.3153 4.6001 -0.0001 11 6 -1.1610 5.7965 -0.0007 12 6 -2.6333 5.3804 -0.0007 13 6 -3.5163 6.6298 -0.0019 14 6 -4.9841 6.2170 0.1256 15 1 -5.1216 5.6089 1.0198 16 6 -5.4154 5.4194 -1.1230 17 6 -6.8643 5.9166 -1.3698 18 6 -6.7577 7.4057 -0.9559 19 7 -5.8383 7.4115 0.1971 20 6 -5.7884 8.3711 1.1728 21 1 -5.2563 8.1786 2.0927 22 6 -6.4220 9.5910 0.9795 23 7 -7.0701 9.8256 -0.1417 24 14 -6.3546 10.8997 2.3108 25 1 -5.1664 11.7642 2.0953 26 1 -7.5860 11.7276 2.2537 27 1 -6.2575 10.2476 3.6414 28 7 1.3192 2.3102 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0239 0.3662 0.0003 33 1 5.1350 2.5842 0.0019 34 1 3.7204 4.6286 -0.0086 35 1 -0.7214 3.7192 -0.0002 36 1 -0.9507 6.3896 -0.8906 37 1 -0.9514 6.3899 0.8893 38 1 -2.8433 4.7874 0.8895 39 1 -2.8431 4.7868 -0.8905 40 1 -3.3722 7.1757 -0.9342 41 1 -3.2440 7.2680 0.8387 42 1 -5.4047 4.3486 -0.9193 43 1 -4.7766 5.6550 -1.9742 44 1 -7.1362 5.8219 -2.4211 45 1 -7.5733 5.3846 -0.7355 46 1 -6.3451 7.9978 -1.7727 47 1 -7.7353 7.7893 -0.6642 48 1 -7.5125 10.6781 -0.2769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267177620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:53 Heat of formation + Delta-G solvation = -22.016259 kcal Electronic energy + Delta-G solvation = -27827.686473 eV Core-core repulsion = 23883.422615 eV Total energy + Delta-G solvation = -3944.263858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22100 -39.62702 -38.08621 -37.76760 -35.57277 -33.39917 -32.72136 -32.04121 -31.22509 -29.38326 -28.24410 -27.66368 -25.41366 -24.55860 -23.67532 -23.25052 -21.52984 -21.01117 -20.11179 -19.16948 -18.80968 -18.00812 -16.75674 -16.49137 -16.44573 -16.24507 -15.90121 -15.69234 -15.05598 -14.58722 -14.56546 -14.43676 -14.15403 -13.82090 -13.63085 -13.51868 -12.84239 -12.67813 -12.31766 -12.17450 -12.02739 -11.90778 -11.70447 -11.56591 -11.43510 -11.01578 -10.83800 -10.78918 -10.63529 -10.53972 -10.43866 -10.07056 -9.98742 -9.93986 -9.73947 -9.59486 -9.57914 -9.19095 -8.94399 -8.54339 -6.73260 -5.71041 -3.05875 0.25548 0.81267 2.50196 2.61469 2.91944 3.41748 3.47270 3.48481 3.49125 3.68289 4.42810 4.51896 4.55364 4.56619 4.82661 4.90946 4.96109 5.00458 5.05028 5.19535 5.27908 5.38674 5.46934 5.49301 5.63083 5.64015 5.67983 5.75262 5.86537 5.87686 5.98121 6.04809 6.13299 6.29155 6.36696 6.37825 6.45494 6.59609 6.72342 6.73044 6.75422 6.98572 7.12628 7.20621 7.44355 7.58375 7.67161 7.84034 8.01107 8.33374 9.24432 9.86082 10.55552 11.41461 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002160 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.559430 B =12962.495120 C =14113.892833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.307 6.307 3 C 0.320 3.680 4 C -0.168 4.168 5 C -0.047 4.047 6 C -0.148 4.148 7 C 0.122 3.878 8 C 0.566 3.434 9 O -0.529 6.529 10 N -0.706 5.706 11 C 0.115 3.885 12 C -0.127 4.127 13 C -0.121 4.121 14 C 0.163 3.837 15 H 0.030 0.970 16 C -0.124 4.124 17 C -0.151 4.151 18 C 0.173 3.827 19 N -0.596 5.596 20 C -0.226 4.226 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.518 5.518 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.408 0.592 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.024 0.976 47 H 0.069 0.931 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.457 -20.631 -1.922 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.214 6.214 3 C 0.139 3.861 4 C -0.189 4.189 5 C -0.072 4.072 6 C -0.170 4.170 7 C -0.015 4.015 8 C 0.350 3.650 9 O -0.405 6.405 10 N -0.357 5.357 11 C -0.007 4.007 12 C -0.165 4.165 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.048 0.952 16 C -0.162 4.162 17 C -0.189 4.189 18 C 0.048 3.952 19 N -0.321 5.321 20 C -0.354 4.354 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 N -0.245 5.245 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.846 -19.896 -1.881 26.793 hybrid contribution 0.503 0.458 0.629 0.926 sum 18.349 -19.438 -1.252 26.760 Atomic orbital electron populations 1.22940 0.76711 1.03391 1.02796 1.86254 1.23313 1.24011 1.87777 1.19769 0.89437 0.84420 0.92487 1.21312 0.91992 0.99965 1.05650 1.21476 1.01020 0.90768 0.93967 1.22029 0.93042 1.01001 1.00891 1.20854 0.92303 0.90175 0.98136 1.17861 0.82506 0.87299 0.77379 1.90815 1.73971 1.25820 1.49932 1.45962 1.05491 1.11218 1.73021 1.21611 0.89795 0.86522 1.02800 1.21836 0.92410 1.00125 1.02170 1.22019 0.96152 0.95448 1.02542 1.20916 0.89244 0.89443 0.94894 0.95186 1.22582 0.97330 0.98111 0.98176 1.23014 0.95735 1.00648 0.99528 1.21408 0.95575 0.89019 0.89177 1.44552 1.37104 1.23318 1.27082 1.18965 1.29982 0.91954 0.94540 0.90836 1.24897 1.00920 0.97260 0.97171 1.69938 1.38423 1.23588 1.24559 0.86181 0.77102 0.81910 0.80961 1.21528 1.21739 1.20675 1.67140 1.41081 0.98241 1.18062 0.91971 0.91991 0.88332 0.83527 0.83192 0.83015 0.75605 0.91118 0.91046 0.91690 0.91642 0.92147 0.91663 0.92692 0.92058 0.92589 0.92521 0.95834 0.91320 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.38 101.05 1.05 1.29 16 2 O -0.31 -2.67 10.48 -18.71 -0.20 -2.86 16 3 C 0.32 2.98 7.49 -17.13 -0.13 2.86 16 4 C -0.17 -1.20 10.05 -39.16 -0.39 -1.59 16 5 C -0.05 -0.30 10.16 -39.35 -0.40 -0.70 16 6 C -0.15 -1.35 9.63 -39.05 -0.38 -1.73 16 7 C 0.12 1.37 6.75 -83.02 -0.56 0.81 16 8 C 0.57 7.55 7.81 -12.19 -0.10 7.45 16 9 O -0.53 -8.63 16.32 5.35 0.09 -8.55 16 10 N -0.71 -8.52 5.55 -61.15 -0.34 -8.86 16 11 C 0.12 1.54 5.67 -4.04 -0.02 1.51 16 12 C -0.13 -1.67 5.07 -26.73 -0.14 -1.81 16 13 C -0.12 -2.15 4.70 -26.73 -0.13 -2.27 16 14 C 0.16 3.23 3.18 -66.96 -0.21 3.02 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 16 C -0.12 -2.11 5.59 -24.90 -0.14 -2.25 16 17 C -0.15 -2.84 7.08 -24.58 -0.17 -3.01 16 18 C 0.17 4.20 5.41 -2.50 -0.01 4.19 16 19 N -0.60 -14.98 3.13 -162.54 -0.51 -15.49 16 20 C -0.23 -6.23 9.76 -15.06 -0.15 -6.38 16 21 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 22 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 23 N -0.92 -27.04 10.57 55.49 0.59 -26.45 16 24 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 N -0.52 -5.39 8.39 -9.87 -0.08 -5.47 16 29 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.15 1.32 7.63 -52.49 -0.40 0.92 16 35 H 0.41 4.21 7.80 -40.82 -0.32 3.89 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 40 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.06 1.27 7.91 -51.93 -0.41 0.86 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 47 H 0.07 1.86 6.93 -51.93 -0.36 1.50 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -32.84 394.86 -9.24 -42.07 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.74 Total: 1.34 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.97 Total: 1.13 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.34 Total: -56.27 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.11 Total: -11.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.84 -9.24 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267177620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.057 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds