Wall clock time and date at job start Tue Mar 31 2020 17:31:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35671 * 117.00020 * 2 1
4 4 C 1.39284 * 119.61484 * 179.97438 * 3 2 1
5 5 C 1.38330 * 119.30349 * 180.02562 * 4 3 2
6 6 C 1.38782 * 118.56170 * 359.73461 * 5 4 3
7 7 C 1.39128 * 119.18158 * 0.52535 * 6 5 4
8 8 C 1.48159 * 119.68602 * 179.73493 * 7 6 5
9 9 O 1.21514 * 120.00229 * 359.73172 * 8 7 6
10 10 N 1.34773 * 119.99883 * 179.72583 * 8 7 6
11 11 C 1.46505 * 120.00153 * 180.02562 * 10 8 7
12 12 C 1.52999 * 109.47363 * 180.02562 * 11 10 8
13 13 C 1.52998 * 109.46986 * 180.02562 * 12 11 10
14 14 C 1.53006 * 109.46705 * 185.07286 * 13 12 11
15 15 H 1.09001 * 109.87191 * 55.93356 * 14 13 12
16 16 C 1.54315 * 109.88580 * 294.91218 * 14 13 12
17 17 C 1.55154 * 102.94605 * 218.23618 * 16 14 13
18 18 C 1.54914 * 101.61366 * 35.48519 * 17 16 14
19 19 N 1.47020 * 110.00881 * 177.02589 * 14 13 12
20 20 C 1.36940 * 125.65012 * 298.47173 * 19 14 13
21 21 H 1.08004 * 119.99669 * 345.38451 * 20 19 14
22 22 C 1.38816 * 120.00204 * 165.39193 * 20 19 14
23 23 N 1.31618 * 119.99783 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 120.00116 * 179.97438 * 22 20 19
25 25 H 1.48511 * 109.46768 * 89.99781 * 24 22 20
26 26 H 1.48491 * 109.47009 * 209.99665 * 24 22 20
27 27 H 1.48497 * 109.46946 * 330.00492 * 24 22 20
28 28 N 1.31903 * 119.61750 * 359.97438 * 3 2 1
29 29 H 1.09000 * 109.47348 * 300.00772 * 1 2 3
30 30 H 1.09002 * 109.46688 * 60.00599 * 1 2 3
31 31 H 1.08998 * 109.47271 * 179.97438 * 1 2 3
32 32 H 1.07998 * 120.34814 * 0.03919 * 4 3 2
33 33 H 1.08000 * 120.71832 * 179.97438 * 5 4 3
34 34 H 1.07998 * 120.40596 * 180.26434 * 6 5 4
35 35 H 0.97002 * 119.99889 * 0.02562 * 10 8 7
36 36 H 1.08993 * 109.47134 * 60.00202 * 11 10 8
37 37 H 1.09003 * 109.46889 * 300.00606 * 11 10 8
38 38 H 1.09002 * 109.47442 * 59.99800 * 12 11 10
39 39 H 1.09003 * 109.47115 * 299.99858 * 12 11 10
40 40 H 1.08996 * 109.47260 * 65.07469 * 13 12 11
41 41 H 1.09000 * 109.47064 * 305.07399 * 13 12 11
42 42 H 1.09000 * 110.71933 * 99.87203 * 16 14 13
43 43 H 1.09001 * 110.87366 * 336.67498 * 16 14 13
44 44 H 1.09003 * 111.00564 * 153.57328 * 17 16 14
45 45 H 1.08998 * 111.00411 * 277.39167 * 17 16 14
46 46 H 1.08992 * 110.36894 * 81.84879 * 18 17 16
47 47 H 1.08999 * 110.36691 * 204.17251 * 18 17 16
48 48 H 0.96995 * 119.99822 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 3.4363 1.2724 0.0005
5 6 4.0576 2.5083 0.0011
6 6 3.2666 3.6486 -0.0046
7 6 1.8819 3.5136 0.0005
8 6 1.0268 4.7235 0.0005
9 8 1.5354 5.8271 0.0010
10 7 -0.3153 4.6001 -0.0001
11 6 -1.1610 5.7965 -0.0007
12 6 -2.6333 5.3804 -0.0007
13 6 -3.5163 6.6298 -0.0019
14 6 -4.9841 6.2170 0.1256
15 1 -5.1216 5.6089 1.0198
16 6 -5.4154 5.4194 -1.1230
17 6 -6.8643 5.9166 -1.3698
18 6 -6.7577 7.4057 -0.9559
19 7 -5.8383 7.4115 0.1971
20 6 -5.7884 8.3711 1.1728
21 1 -5.2563 8.1786 2.0927
22 6 -6.4220 9.5910 0.9795
23 7 -7.0701 9.8256 -0.1417
24 14 -6.3546 10.8997 2.3108
25 1 -5.1664 11.7642 2.0953
26 1 -7.5860 11.7276 2.2537
27 1 -6.2575 10.2476 3.6414
28 7 1.3192 2.3102 -0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0276 -0.0005
32 1 4.0239 0.3662 0.0003
33 1 5.1350 2.5842 0.0019
34 1 3.7204 4.6286 -0.0086
35 1 -0.7214 3.7192 -0.0002
36 1 -0.9507 6.3896 -0.8906
37 1 -0.9514 6.3899 0.8893
38 1 -2.8433 4.7874 0.8895
39 1 -2.8431 4.7868 -0.8905
40 1 -3.3722 7.1757 -0.9342
41 1 -3.2440 7.2680 0.8387
42 1 -5.4047 4.3486 -0.9193
43 1 -4.7766 5.6550 -1.9742
44 1 -7.1362 5.8219 -2.4211
45 1 -7.5733 5.3846 -0.7355
46 1 -6.3451 7.9978 -1.7727
47 1 -7.7353 7.7893 -0.6642
48 1 -7.5125 10.6781 -0.2769
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267177620.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:31:52
Heat of formation + Delta-G solvation = -44.729835 kcal
Electronic energy + Delta-G solvation = -27828.671408 eV
Core-core repulsion = 23883.422615 eV
Total energy + Delta-G solvation = -3945.248792 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.92792 -40.55379 -39.47822 -38.67799 -36.77809 -34.75211 -34.03910 -33.29129
-31.92214 -31.23860 -29.59696 -28.28747 -26.74860 -26.19489 -24.83252 -23.90647
-22.75633 -21.97326 -21.85631 -20.75660 -19.59284 -18.77279 -18.69020 -17.17573
-17.11868 -17.03045 -16.99288 -16.80420 -16.68585 -16.08944 -15.74033 -15.59063
-15.18809 -15.10085 -14.49169 -14.27954 -14.19648 -13.87607 -13.70531 -13.58284
-13.23625 -13.13234 -12.99070 -12.75236 -12.69274 -12.67186 -12.28221 -12.16895
-11.99797 -11.85805 -11.76858 -11.61259 -11.51094 -11.30764 -11.15586 -11.03516
-10.74568 -10.65172 -10.23728 -9.62771 -8.77154 -7.85283 -5.20819 -0.45134
0.20918 1.44019 1.45766 1.53880 1.62040 1.93881 2.09044 2.49908
2.75063 2.93694 3.33268 3.68215 3.78774 3.91008 3.94009 3.99737
4.01652 4.15653 4.24356 4.25651 4.34792 4.41683 4.46247 4.47614
4.47943 4.61726 4.75817 4.81268 4.82534 4.83785 4.92115 4.97735
5.03086 5.10302 5.12637 5.23600 5.29338 5.32358 5.34914 5.50953
5.51379 5.68351 5.70486 5.80303 6.09258 6.27959 6.31787 6.62731
7.03920 7.13269 7.82946 8.50267 9.26385
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.016667 B = 0.002160 C = 0.001983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1679.559430 B =12962.495120 C =14113.892833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.314 6.314
3 C 0.302 3.698
4 C -0.158 4.158
5 C -0.035 4.035
6 C -0.152 4.152
7 C 0.096 3.904
8 C 0.563 3.437
9 O -0.569 6.569
10 N -0.697 5.697
11 C 0.122 3.878
12 C -0.108 4.108
13 C -0.111 4.111
14 C 0.152 3.848
15 H 0.035 0.965
16 C -0.111 4.111
17 C -0.137 4.137
18 C 0.175 3.825
19 N -0.619 5.619
20 C -0.231 4.231
21 H 0.075 0.925
22 C -0.066 4.066
23 N -0.949 5.949
24 Si 0.970 3.030
25 H -0.289 1.289
26 H -0.294 1.294
27 H -0.269 1.269
28 N -0.527 5.527
29 H 0.057 0.943
30 H 0.058 0.942
31 H 0.122 0.878
32 H 0.176 0.824
33 H 0.190 0.810
34 H 0.151 0.849
35 H 0.419 0.581
36 H 0.059 0.941
37 H 0.056 0.944
38 H 0.080 0.920
39 H 0.088 0.912
40 H 0.042 0.958
41 H 0.038 0.962
42 H 0.096 0.904
43 H 0.070 0.930
44 H 0.080 0.920
45 H 0.064 0.936
46 H -0.009 1.009
47 H 0.029 0.971
48 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.313 -23.952 -1.762 31.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.220 6.220
3 C 0.121 3.879
4 C -0.178 4.178
5 C -0.060 4.060
6 C -0.174 4.174
7 C -0.040 4.040
8 C 0.349 3.651
9 O -0.448 6.448
10 N -0.348 5.348
11 C -0.001 4.001
12 C -0.146 4.146
13 C -0.151 4.151
14 C 0.046 3.954
15 H 0.053 0.947
16 C -0.149 4.149
17 C -0.176 4.176
18 C 0.050 3.950
19 N -0.343 5.343
20 C -0.360 4.360
21 H 0.093 0.907
22 C -0.259 4.259
23 N -0.598 5.598
24 Si 0.799 3.201
25 H -0.216 1.216
26 H -0.221 1.221
27 H -0.194 1.194
28 N -0.255 5.255
29 H 0.076 0.924
30 H 0.077 0.923
31 H 0.140 0.860
32 H 0.193 0.807
33 H 0.207 0.793
34 H 0.168 0.832
35 H 0.256 0.744
36 H 0.078 0.922
37 H 0.074 0.926
38 H 0.098 0.902
39 H 0.107 0.893
40 H 0.061 0.939
41 H 0.057 0.943
42 H 0.114 0.886
43 H 0.089 0.911
44 H 0.099 0.901
45 H 0.082 0.918
46 H 0.009 0.991
47 H 0.048 0.952
48 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 19.706 -23.279 -1.712 30.548
hybrid contribution -0.025 1.392 0.589 1.511
sum 19.681 -21.887 -1.123 29.456
Atomic orbital electron populations
1.23099 0.75834 1.04862 1.02422 1.86256 1.24295 1.23682 1.87807
1.20156 0.90488 0.84261 0.93030 1.21741 0.91318 1.01332 1.03443
1.21893 1.02658 0.89385 0.92053 1.22202 0.92533 1.02129 1.00507
1.20575 0.92726 0.89622 1.01066 1.18265 0.82807 0.87704 0.76371
1.90784 1.74651 1.27475 1.51873 1.45820 1.05219 1.11197 1.72517
1.21393 0.90246 0.86894 1.01610 1.21628 0.90963 0.97999 1.03999
1.21806 0.95873 0.96967 1.00477 1.21208 0.89516 0.87919 0.96789
0.94709 1.22577 0.95665 0.99845 0.96811 1.22885 0.97473 0.96153
1.01067 1.21212 0.93244 0.92513 0.88076 1.44865 1.38720 1.24153
1.26604 1.19297 1.28787 0.92664 0.95293 0.90674 1.25676 1.01425
0.99431 0.99376 1.70149 1.39697 1.23582 1.26407 0.85193 0.76565
0.79265 0.79057 1.21576 1.22083 1.19368 1.66996 1.41680 0.98252
1.18569 0.92392 0.92283 0.86009 0.80678 0.79294 0.83169 0.74379
0.92228 0.92581 0.90164 0.89340 0.93900 0.94272 0.88584 0.91085
0.90110 0.91766 0.99073 0.95210 0.94512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 10.38 113.37 1.18 1.54 16
2 O -0.31 -4.79 10.48 -89.88 -0.94 -5.73 16
3 C 0.30 5.02 7.49 84.93 0.64 5.66 16
4 C -0.16 -1.74 10.05 22.54 0.23 -1.51 16
5 C -0.04 -0.34 10.16 22.42 0.23 -0.12 16
6 C -0.15 -2.57 9.63 22.61 0.22 -2.35 16
7 C 0.10 2.08 6.75 41.84 0.28 2.36 16
8 C 0.56 15.10 7.81 86.88 0.68 15.78 16
9 O -0.57 -19.09 16.32 -3.76 -0.06 -19.15 16
10 N -0.70 -16.39 5.55 -465.67 -2.58 -18.97 16
11 C 0.12 3.22 5.67 86.38 0.49 3.71 16
12 C -0.11 -2.64 5.07 30.59 0.16 -2.49 16
13 C -0.11 -3.90 4.70 30.60 0.14 -3.76 16
14 C 0.15 5.87 3.18 45.34 0.14 6.02 16
15 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16
16 C -0.11 -3.44 5.59 31.78 0.18 -3.26 16
17 C -0.14 -4.93 7.08 31.99 0.23 -4.70 16
18 C 0.17 8.72 5.41 86.85 0.47 9.19 16
19 N -0.62 -31.65 3.13 -668.15 -2.09 -33.74 16
20 C -0.23 -13.05 9.76 84.03 0.82 -12.23 16
21 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16
22 C -0.07 -3.83 5.47 84.86 0.46 -3.37 16
23 N -0.95 -58.35 10.57 21.65 0.23 -58.12 16
24 Si 0.97 46.92 29.55 68.60 2.03 48.95 16
25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16
26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16
27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
28 N -0.53 -10.32 8.39 -298.19 -2.50 -12.82 16
29 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16
30 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16
31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16
32 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16
33 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16
34 H 0.15 2.53 7.63 -2.91 -0.02 2.50 16
35 H 0.42 8.03 7.80 -92.71 -0.72 7.30 16
36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16
38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
39 H 0.09 1.83 7.56 -2.39 -0.02 1.81 16
40 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16
41 H 0.04 1.55 7.91 -2.39 -0.02 1.53 16
42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
43 H 0.07 2.09 7.80 -2.39 -0.02 2.07 16
44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16
45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
46 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16
47 H 0.03 1.68 6.93 -2.39 -0.02 1.66 16
48 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
Total: -1.00 -75.69 394.86 0.85 -74.85
By element:
Atomic # 1 Polarization: 14.05 SS G_CDS: 0.23 Total: 14.28 kcal
Atomic # 6 Polarization: 3.92 SS G_CDS: 6.54 Total: 10.46 kcal
Atomic # 7 Polarization: -116.70 SS G_CDS: -6.95 Total: -123.65 kcal
Atomic # 8 Polarization: -23.88 SS G_CDS: -1.00 Total: -24.88 kcal
Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal
Total: -75.69 0.85 -74.85 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267177620.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.116 kcal
(2) G-P(sol) polarization free energy of solvation -75.691 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds