Wall clock time and date at job start Tue Mar 31 2020 17:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35671 * 117.00020 * 2 1 4 4 C 1.39284 * 119.61484 * 179.97438 * 3 2 1 5 5 C 1.38330 * 119.30349 * 180.02562 * 4 3 2 6 6 C 1.38782 * 118.56170 * 359.73461 * 5 4 3 7 7 C 1.39128 * 119.18158 * 0.52535 * 6 5 4 8 8 C 1.48159 * 119.68602 * 179.73493 * 7 6 5 9 9 O 1.21514 * 120.00229 * 359.73172 * 8 7 6 10 10 N 1.34773 * 119.99883 * 179.72583 * 8 7 6 11 11 C 1.46505 * 120.00153 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47363 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46705 * 185.07286 * 13 12 11 15 15 H 1.09001 * 109.87191 * 55.93356 * 14 13 12 16 16 C 1.54315 * 109.88580 * 294.91218 * 14 13 12 17 17 C 1.55154 * 102.94605 * 218.23618 * 16 14 13 18 18 C 1.54914 * 101.61366 * 35.48519 * 17 16 14 19 19 N 1.47020 * 110.00881 * 177.02589 * 14 13 12 20 20 C 1.36940 * 125.65012 * 298.47173 * 19 14 13 21 21 H 1.08004 * 119.99669 * 345.38451 * 20 19 14 22 22 C 1.38816 * 120.00204 * 165.39193 * 20 19 14 23 23 N 1.31618 * 119.99783 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.46768 * 89.99781 * 24 22 20 26 26 H 1.48491 * 109.47009 * 209.99665 * 24 22 20 27 27 H 1.48497 * 109.46946 * 330.00492 * 24 22 20 28 28 N 1.31903 * 119.61750 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47348 * 300.00772 * 1 2 3 30 30 H 1.09002 * 109.46688 * 60.00599 * 1 2 3 31 31 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.34814 * 0.03919 * 4 3 2 33 33 H 1.08000 * 120.71832 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.40596 * 180.26434 * 6 5 4 35 35 H 0.97002 * 119.99889 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47134 * 60.00202 * 11 10 8 37 37 H 1.09003 * 109.46889 * 300.00606 * 11 10 8 38 38 H 1.09002 * 109.47442 * 59.99800 * 12 11 10 39 39 H 1.09003 * 109.47115 * 299.99858 * 12 11 10 40 40 H 1.08996 * 109.47260 * 65.07469 * 13 12 11 41 41 H 1.09000 * 109.47064 * 305.07399 * 13 12 11 42 42 H 1.09000 * 110.71933 * 99.87203 * 16 14 13 43 43 H 1.09001 * 110.87366 * 336.67498 * 16 14 13 44 44 H 1.09003 * 111.00564 * 153.57328 * 17 16 14 45 45 H 1.08998 * 111.00411 * 277.39167 * 17 16 14 46 46 H 1.08992 * 110.36894 * 81.84879 * 18 17 16 47 47 H 1.08999 * 110.36691 * 204.17251 * 18 17 16 48 48 H 0.96995 * 119.99822 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2666 3.6486 -0.0046 7 6 1.8819 3.5136 0.0005 8 6 1.0268 4.7235 0.0005 9 8 1.5354 5.8271 0.0010 10 7 -0.3153 4.6001 -0.0001 11 6 -1.1610 5.7965 -0.0007 12 6 -2.6333 5.3804 -0.0007 13 6 -3.5163 6.6298 -0.0019 14 6 -4.9841 6.2170 0.1256 15 1 -5.1216 5.6089 1.0198 16 6 -5.4154 5.4194 -1.1230 17 6 -6.8643 5.9166 -1.3698 18 6 -6.7577 7.4057 -0.9559 19 7 -5.8383 7.4115 0.1971 20 6 -5.7884 8.3711 1.1728 21 1 -5.2563 8.1786 2.0927 22 6 -6.4220 9.5910 0.9795 23 7 -7.0701 9.8256 -0.1417 24 14 -6.3546 10.8997 2.3108 25 1 -5.1664 11.7642 2.0953 26 1 -7.5860 11.7276 2.2537 27 1 -6.2575 10.2476 3.6414 28 7 1.3192 2.3102 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0239 0.3662 0.0003 33 1 5.1350 2.5842 0.0019 34 1 3.7204 4.6286 -0.0086 35 1 -0.7214 3.7192 -0.0002 36 1 -0.9507 6.3896 -0.8906 37 1 -0.9514 6.3899 0.8893 38 1 -2.8433 4.7874 0.8895 39 1 -2.8431 4.7868 -0.8905 40 1 -3.3722 7.1757 -0.9342 41 1 -3.2440 7.2680 0.8387 42 1 -5.4047 4.3486 -0.9193 43 1 -4.7766 5.6550 -1.9742 44 1 -7.1362 5.8219 -2.4211 45 1 -7.5733 5.3846 -0.7355 46 1 -6.3451 7.9978 -1.7727 47 1 -7.7353 7.7893 -0.6642 48 1 -7.5125 10.6781 -0.2769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267177620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:52 Heat of formation + Delta-G solvation = -44.729835 kcal Electronic energy + Delta-G solvation = -27828.671408 eV Core-core repulsion = 23883.422615 eV Total energy + Delta-G solvation = -3945.248792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92792 -40.55379 -39.47822 -38.67799 -36.77809 -34.75211 -34.03910 -33.29129 -31.92214 -31.23860 -29.59696 -28.28747 -26.74860 -26.19489 -24.83252 -23.90647 -22.75633 -21.97326 -21.85631 -20.75660 -19.59284 -18.77279 -18.69020 -17.17573 -17.11868 -17.03045 -16.99288 -16.80420 -16.68585 -16.08944 -15.74033 -15.59063 -15.18809 -15.10085 -14.49169 -14.27954 -14.19648 -13.87607 -13.70531 -13.58284 -13.23625 -13.13234 -12.99070 -12.75236 -12.69274 -12.67186 -12.28221 -12.16895 -11.99797 -11.85805 -11.76858 -11.61259 -11.51094 -11.30764 -11.15586 -11.03516 -10.74568 -10.65172 -10.23728 -9.62771 -8.77154 -7.85283 -5.20819 -0.45134 0.20918 1.44019 1.45766 1.53880 1.62040 1.93881 2.09044 2.49908 2.75063 2.93694 3.33268 3.68215 3.78774 3.91008 3.94009 3.99737 4.01652 4.15653 4.24356 4.25651 4.34792 4.41683 4.46247 4.47614 4.47943 4.61726 4.75817 4.81268 4.82534 4.83785 4.92115 4.97735 5.03086 5.10302 5.12637 5.23600 5.29338 5.32358 5.34914 5.50953 5.51379 5.68351 5.70486 5.80303 6.09258 6.27959 6.31787 6.62731 7.03920 7.13269 7.82946 8.50267 9.26385 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002160 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.559430 B =12962.495120 C =14113.892833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C 0.302 3.698 4 C -0.158 4.158 5 C -0.035 4.035 6 C -0.152 4.152 7 C 0.096 3.904 8 C 0.563 3.437 9 O -0.569 6.569 10 N -0.697 5.697 11 C 0.122 3.878 12 C -0.108 4.108 13 C -0.111 4.111 14 C 0.152 3.848 15 H 0.035 0.965 16 C -0.111 4.111 17 C -0.137 4.137 18 C 0.175 3.825 19 N -0.619 5.619 20 C -0.231 4.231 21 H 0.075 0.925 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.970 3.030 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.269 1.269 28 N -0.527 5.527 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.176 0.824 33 H 0.190 0.810 34 H 0.151 0.849 35 H 0.419 0.581 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.064 0.936 46 H -0.009 1.009 47 H 0.029 0.971 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.313 -23.952 -1.762 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.220 6.220 3 C 0.121 3.879 4 C -0.178 4.178 5 C -0.060 4.060 6 C -0.174 4.174 7 C -0.040 4.040 8 C 0.349 3.651 9 O -0.448 6.448 10 N -0.348 5.348 11 C -0.001 4.001 12 C -0.146 4.146 13 C -0.151 4.151 14 C 0.046 3.954 15 H 0.053 0.947 16 C -0.149 4.149 17 C -0.176 4.176 18 C 0.050 3.950 19 N -0.343 5.343 20 C -0.360 4.360 21 H 0.093 0.907 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.799 3.201 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.194 1.194 28 N -0.255 5.255 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.193 0.807 33 H 0.207 0.793 34 H 0.168 0.832 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.009 0.991 47 H 0.048 0.952 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.706 -23.279 -1.712 30.548 hybrid contribution -0.025 1.392 0.589 1.511 sum 19.681 -21.887 -1.123 29.456 Atomic orbital electron populations 1.23099 0.75834 1.04862 1.02422 1.86256 1.24295 1.23682 1.87807 1.20156 0.90488 0.84261 0.93030 1.21741 0.91318 1.01332 1.03443 1.21893 1.02658 0.89385 0.92053 1.22202 0.92533 1.02129 1.00507 1.20575 0.92726 0.89622 1.01066 1.18265 0.82807 0.87704 0.76371 1.90784 1.74651 1.27475 1.51873 1.45820 1.05219 1.11197 1.72517 1.21393 0.90246 0.86894 1.01610 1.21628 0.90963 0.97999 1.03999 1.21806 0.95873 0.96967 1.00477 1.21208 0.89516 0.87919 0.96789 0.94709 1.22577 0.95665 0.99845 0.96811 1.22885 0.97473 0.96153 1.01067 1.21212 0.93244 0.92513 0.88076 1.44865 1.38720 1.24153 1.26604 1.19297 1.28787 0.92664 0.95293 0.90674 1.25676 1.01425 0.99431 0.99376 1.70149 1.39697 1.23582 1.26407 0.85193 0.76565 0.79265 0.79057 1.21576 1.22083 1.19368 1.66996 1.41680 0.98252 1.18569 0.92392 0.92283 0.86009 0.80678 0.79294 0.83169 0.74379 0.92228 0.92581 0.90164 0.89340 0.93900 0.94272 0.88584 0.91085 0.90110 0.91766 0.99073 0.95210 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.38 113.37 1.18 1.54 16 2 O -0.31 -4.79 10.48 -89.88 -0.94 -5.73 16 3 C 0.30 5.02 7.49 84.93 0.64 5.66 16 4 C -0.16 -1.74 10.05 22.54 0.23 -1.51 16 5 C -0.04 -0.34 10.16 22.42 0.23 -0.12 16 6 C -0.15 -2.57 9.63 22.61 0.22 -2.35 16 7 C 0.10 2.08 6.75 41.84 0.28 2.36 16 8 C 0.56 15.10 7.81 86.88 0.68 15.78 16 9 O -0.57 -19.09 16.32 -3.76 -0.06 -19.15 16 10 N -0.70 -16.39 5.55 -465.67 -2.58 -18.97 16 11 C 0.12 3.22 5.67 86.38 0.49 3.71 16 12 C -0.11 -2.64 5.07 30.59 0.16 -2.49 16 13 C -0.11 -3.90 4.70 30.60 0.14 -3.76 16 14 C 0.15 5.87 3.18 45.34 0.14 6.02 16 15 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 16 C -0.11 -3.44 5.59 31.78 0.18 -3.26 16 17 C -0.14 -4.93 7.08 31.99 0.23 -4.70 16 18 C 0.17 8.72 5.41 86.85 0.47 9.19 16 19 N -0.62 -31.65 3.13 -668.15 -2.09 -33.74 16 20 C -0.23 -13.05 9.76 84.03 0.82 -12.23 16 21 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.07 -3.83 5.47 84.86 0.46 -3.37 16 23 N -0.95 -58.35 10.57 21.65 0.23 -58.12 16 24 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 N -0.53 -10.32 8.39 -298.19 -2.50 -12.82 16 29 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 34 H 0.15 2.53 7.63 -2.91 -0.02 2.50 16 35 H 0.42 8.03 7.80 -92.71 -0.72 7.30 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.83 7.56 -2.39 -0.02 1.81 16 40 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 41 H 0.04 1.55 7.91 -2.39 -0.02 1.53 16 42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 2.09 7.80 -2.39 -0.02 2.07 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16 47 H 0.03 1.68 6.93 -2.39 -0.02 1.66 16 48 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -75.69 394.86 0.85 -74.85 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.23 Total: 14.28 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.54 Total: 10.46 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -6.95 Total: -123.65 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.00 Total: -24.88 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.69 0.85 -74.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267177620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.116 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds