Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35681 * 117.00080 * 2 1 4 4 C 1.38914 * 119.68792 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.11346 * 179.74553 * 4 3 2 6 6 C 1.38833 * 118.48555 * 0.54497 * 5 4 3 7 7 C 1.50695 * 120.35829 * 179.73618 * 6 5 4 8 8 C 1.53006 * 109.46722 * 269.71800 * 7 6 5 9 9 C 1.50698 * 109.46965 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00239 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99943 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46719 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.64028 * 303.31454 * 13 12 11 15 15 C 1.55159 * 110.71889 * 179.97438 * 13 12 11 16 16 C 1.54909 * 101.57990 * 206.13300 * 15 13 12 17 17 N 1.47743 * 104.83995 * 37.09908 * 16 15 13 18 18 C 1.36946 * 125.82120 * 155.82347 * 17 16 15 19 19 H 1.08000 * 119.99920 * 179.90231 * 18 17 16 20 20 C 1.38814 * 119.99867 * 359.91271 * 18 17 16 21 21 N 1.31617 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47348 * 59.99174 * 22 20 18 24 24 H 1.48492 * 109.47116 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46964 * 299.99484 * 22 20 18 26 26 C 1.47020 * 108.53125 * 335.74644 * 17 16 15 27 27 C 1.38047 * 119.28666 * 359.45506 * 6 5 4 28 28 N 1.31970 * 120.83638 * 0.27953 * 27 6 5 29 29 H 1.08997 * 109.46810 * 59.99729 * 1 2 3 30 30 H 1.08997 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46794 * 299.99565 * 1 2 3 32 32 H 1.08004 * 120.44448 * 0.04523 * 4 3 2 33 33 H 1.08005 * 120.76077 * 180.29437 * 5 4 3 34 34 H 1.09000 * 109.47770 * 149.72399 * 7 6 5 35 35 H 1.08997 * 109.47252 * 29.71545 * 7 6 5 36 36 H 1.08998 * 109.47140 * 60.00514 * 8 7 6 37 37 H 1.08997 * 109.47048 * 299.99870 * 8 7 6 38 38 H 0.97000 * 119.99671 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47222 * 60.01303 * 12 11 9 40 40 H 1.08997 * 109.47438 * 300.00126 * 12 11 9 41 41 H 1.08994 * 111.00854 * 324.21346 * 15 13 12 42 42 H 1.09001 * 110.99961 * 88.02474 * 15 13 12 43 43 H 1.09003 * 110.36363 * 155.85234 * 16 15 13 44 44 H 1.09001 * 110.36855 * 278.17084 * 16 15 13 45 45 H 0.96998 * 119.99524 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88367 * 241.68734 * 26 17 16 47 47 H 1.09000 * 109.88319 * 120.67352 * 26 17 16 48 48 H 1.08001 * 119.58308 * 180.30148 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5132 -0.0048 6 6 3.2504 3.6492 0.0010 7 6 3.8767 5.0199 0.0015 8 6 4.0881 5.4834 1.4442 9 6 4.7149 6.8538 1.4448 10 8 4.9673 7.4057 0.3947 11 7 4.9942 7.4667 2.6123 12 6 5.6031 8.7992 2.6127 13 6 5.8146 9.2626 4.0555 14 1 4.8729 9.2528 4.6042 15 6 6.4599 10.6733 4.0899 16 6 7.1841 10.6506 5.4590 17 7 7.6935 9.2704 5.5949 18 6 8.7550 8.8803 6.3671 19 1 9.0470 7.8410 6.3982 20 6 9.4556 9.8206 7.1100 21 7 9.1000 11.0873 7.0718 22 14 10.9032 9.2883 8.1638 23 1 11.9405 8.6663 7.3022 24 1 11.4767 10.4728 8.8517 25 1 10.4433 8.3026 9.1749 26 6 6.8677 8.3835 4.7625 27 6 1.8770 3.5097 0.0005 28 7 1.3185 2.3140 0.0000 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0229 0.3696 0.0002 33 1 5.1254 2.5948 -0.0093 34 1 3.2184 5.7204 -0.5123 35 1 4.8373 4.9806 -0.5120 36 1 4.7465 4.7830 1.9581 37 1 3.1274 5.5227 1.9577 38 1 4.7920 7.0254 3.4521 39 1 4.9449 9.4996 2.0987 40 1 6.5639 8.7598 2.0996 41 1 7.1713 10.7975 3.2735 42 1 5.6978 11.4521 4.0632 43 1 8.0110 11.3608 5.4625 44 1 6.4837 10.8787 6.2625 45 1 9.5898 11.7443 7.5906 46 1 6.3715 7.6426 5.3894 47 1 7.4914 7.8839 4.0213 48 1 1.2517 4.3903 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267298780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = -24.476807 kcal Electronic energy + Delta-G solvation = -27138.599984 eV Core-core repulsion = 23194.229429 eV Total energy + Delta-G solvation = -3944.370555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.02892 -39.77123 -38.41850 -37.65949 -34.76849 -34.36112 -32.62295 -32.47304 -30.40062 -29.61143 -28.28185 -27.60116 -25.79663 -24.81379 -23.82243 -23.28128 -21.83325 -20.63401 -19.92574 -19.54709 -18.77054 -17.51088 -17.29057 -16.76403 -16.36129 -16.08256 -15.70411 -15.30592 -15.03960 -14.87032 -14.69422 -14.57002 -13.98539 -13.74560 -13.58095 -13.53751 -13.34128 -12.69195 -12.53456 -12.52823 -12.34838 -11.92471 -11.77810 -11.70959 -11.50458 -11.45306 -11.34037 -10.97763 -10.80485 -10.45965 -10.25025 -10.17631 -10.04416 -9.98836 -9.91611 -9.73840 -9.52118 -8.96867 -8.73031 -8.67102 -6.85475 -5.67423 -3.08963 0.76806 0.88832 2.64556 2.72624 3.18745 3.38990 3.42399 3.43244 3.44606 3.94511 4.37716 4.47166 4.55047 4.59726 4.68229 4.81150 4.90136 4.93261 4.94127 4.99750 5.14091 5.23728 5.24673 5.29160 5.33845 5.39712 5.50786 5.52937 5.61772 5.67660 5.82690 5.87072 6.00475 6.05594 6.08132 6.09985 6.32071 6.44576 6.52869 6.56793 6.70183 6.84840 6.88519 7.47023 7.48596 7.53819 7.59880 7.83278 8.23708 8.34015 9.19610 9.80944 10.46164 11.36804 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.001739 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.358716 B =16098.757496 C =17040.517488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.312 3.688 4 C -0.187 4.187 5 C -0.036 4.036 6 C -0.169 4.169 7 C -0.055 4.055 8 C -0.137 4.137 9 C 0.510 3.490 10 O -0.546 6.546 11 N -0.726 5.726 12 C 0.132 3.868 13 C -0.115 4.115 14 H 0.075 0.925 15 C -0.135 4.135 16 C 0.151 3.849 17 N -0.604 5.604 18 C -0.224 4.224 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.142 3.858 27 C 0.143 3.857 28 N -0.539 5.539 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.012 0.988 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.023 0.977 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.544 -16.871 -14.454 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.134 3.866 4 C -0.207 4.207 5 C -0.062 4.062 6 C -0.172 4.172 7 C -0.093 4.093 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.424 6.424 11 N -0.377 5.377 12 C 0.009 3.991 13 C -0.134 4.134 14 H 0.094 0.906 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.015 3.985 27 C -0.013 4.013 28 N -0.262 5.262 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.236 0.764 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.041 0.959 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.006 -16.729 -15.051 28.207 hybrid contribution 1.193 -0.383 1.140 1.694 sum -15.813 -17.112 -13.912 27.137 Atomic orbital electron populations 1.22853 0.77184 1.02930 1.02495 1.86236 1.22969 1.24648 1.87888 1.19873 0.89482 0.84711 0.92581 1.21085 0.91999 0.99643 1.08007 1.21398 1.00749 0.90697 0.93344 1.20777 0.94738 0.96505 1.05132 1.20174 1.02121 0.91399 0.95602 1.21685 1.02576 0.94454 0.98996 1.20620 0.78464 0.87542 0.83785 1.90705 1.53452 1.66944 1.31330 1.46126 1.63276 1.19693 1.08567 1.21447 0.98076 0.82431 0.97183 1.22448 0.99227 0.98066 0.93672 0.90615 1.22999 0.99081 0.93732 1.01619 1.21983 0.97336 0.88602 0.89425 1.44563 1.33278 1.03098 1.52113 1.19024 1.04138 0.93426 1.18649 0.90594 1.24791 0.99824 0.95547 1.00506 1.69781 1.42041 1.00412 1.44821 0.86149 0.82141 0.77136 0.80040 1.21161 1.21535 1.21238 1.21311 0.91361 0.92805 0.92982 1.22345 0.92295 0.93577 0.93057 1.67332 1.40921 0.98811 1.19138 0.92319 0.88654 0.92256 0.84071 0.83895 0.89842 0.89845 0.88710 0.88804 0.76419 0.91715 0.91299 0.91829 0.92119 0.87562 0.96960 0.93661 0.96525 0.95862 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.31 -2.89 10.48 -18.75 -0.20 -3.09 16 3 C 0.31 3.05 7.49 -17.12 -0.13 2.92 16 4 C -0.19 -1.53 10.04 -39.28 -0.39 -1.92 16 5 C -0.04 -0.27 9.85 -39.31 -0.39 -0.66 16 6 C -0.17 -1.31 5.15 -104.47 -0.54 -1.85 16 7 C -0.05 -0.43 4.66 -27.88 -0.13 -0.56 16 8 C -0.14 -1.09 5.68 -27.88 -0.16 -1.25 16 9 C 0.51 6.08 7.83 -10.98 -0.09 5.99 16 10 O -0.55 -8.59 15.98 5.55 0.09 -8.50 16 11 N -0.73 -8.59 5.40 -60.29 -0.33 -8.91 16 12 C 0.13 1.87 4.99 -4.04 -0.02 1.85 16 13 C -0.11 -1.85 3.02 -88.78 -0.27 -2.12 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.14 -2.46 6.53 -24.58 -0.16 -2.62 16 16 C 0.15 3.60 5.91 -2.35 -0.01 3.59 16 17 N -0.60 -15.25 3.41 -169.81 -0.58 -15.83 16 18 C -0.22 -6.20 10.28 -15.05 -0.15 -6.36 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.68 10.11 55.49 0.56 -26.12 16 22 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.14 2.81 6.52 -3.06 -0.02 2.79 16 27 C 0.14 1.18 10.85 -17.56 -0.19 0.99 16 28 N -0.54 -5.30 9.22 -13.33 -0.12 -5.43 16 29 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.40 3.98 8.33 -40.82 -0.34 3.64 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 41 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.11 2.86 5.88 -51.93 -0.31 2.56 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 48 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -33.63 395.96 -9.09 -42.71 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.76 Total: 0.60 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.70 Total: 1.70 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.47 Total: -56.29 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.11 Total: -11.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.63 -9.09 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267298780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.238 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds