Wall clock time and date at job start Tue Mar 31 2020 17:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35745 * 117.00325 * 2 1 4 4 C 1.39216 * 120.81082 * 359.97438 * 3 2 1 5 5 C 1.38319 * 119.28533 * 180.02562 * 4 3 2 6 6 N 1.31612 * 120.96945 * 359.72616 * 5 4 3 7 7 C 1.32797 * 121.78202 * 0.56718 * 6 5 4 8 8 C 1.48179 * 119.69987 * 179.71070 * 7 6 5 9 9 O 1.21513 * 120.00346 * 170.25613 * 8 7 6 10 10 N 1.34788 * 119.99938 * 350.25558 * 8 7 6 11 11 C 1.46925 * 120.62718 * 352.14941 * 10 8 7 12 12 C 1.53195 * 108.77649 * 233.63062 * 11 10 8 13 13 C 1.53041 * 109.31111 * 305.36946 * 12 11 10 14 14 C 1.53034 * 109.54043 * 61.36276 * 13 12 11 15 15 H 1.09002 * 109.52496 * 58.60161 * 14 13 12 16 16 C 1.52997 * 109.49819 * 178.68513 * 14 13 12 17 17 C 1.53001 * 109.47259 * 184.83727 * 16 14 13 18 18 N 1.46495 * 109.47490 * 179.97438 * 17 16 14 19 19 C 1.36940 * 120.00561 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99506 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46920 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46732 * 120.00045 * 23 21 19 26 26 H 1.48496 * 109.47213 * 240.00014 * 23 21 19 27 27 C 1.46923 * 120.63317 * 172.17239 * 10 8 7 28 28 C 1.39104 * 120.60362 * 359.42836 * 7 6 5 29 29 H 1.09001 * 109.47094 * 299.99401 * 1 2 3 30 30 H 1.08995 * 109.47351 * 59.99252 * 1 2 3 31 31 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.35711 * 0.04510 * 4 3 2 33 33 H 1.08001 * 119.50870 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.58563 * 113.84531 * 11 10 8 35 35 H 1.09000 * 109.58659 * 353.42183 * 11 10 8 36 36 H 1.08998 * 109.49664 * 185.41165 * 12 11 10 37 37 H 1.09000 * 109.51985 * 65.33492 * 12 11 10 38 38 H 1.09007 * 109.45813 * 301.34030 * 13 12 11 39 39 H 1.09002 * 109.45862 * 181.38767 * 13 12 11 40 40 H 1.08999 * 109.46928 * 304.83782 * 16 14 13 41 41 H 1.09001 * 109.47250 * 64.83813 * 16 14 13 42 42 H 1.08999 * 109.47196 * 299.99891 * 17 16 14 43 43 H 1.09001 * 109.46919 * 59.99883 * 17 16 14 44 44 H 0.97001 * 120.00239 * 0.02562 * 18 17 16 45 45 H 0.97003 * 119.99605 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58280 * 6.58146 * 27 10 8 47 47 H 1.08995 * 109.58919 * 246.16042 * 27 10 8 48 48 H 1.08001 * 120.50812 * 180.24761 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9644 3.6029 -0.0011 6 7 3.2793 3.6590 0.0043 7 6 4.0262 2.5610 -0.0007 8 6 5.5034 2.6779 -0.0007 9 8 6.1910 1.6912 0.1728 10 7 6.0844 3.8787 -0.1933 11 6 5.2792 5.0474 -0.5739 12 6 5.8778 5.6673 -1.8405 13 6 7.3582 5.9742 -1.6028 14 6 8.1081 4.6750 -1.3000 15 1 7.9900 3.9833 -2.1341 16 6 9.5935 4.9787 -1.0948 17 6 10.3616 3.6682 -0.9119 18 7 11.7840 3.9589 -0.7161 19 6 12.6730 2.9341 -0.5297 20 1 12.3256 1.9116 -0.5274 21 6 14.0207 3.2097 -0.3436 22 7 14.4440 4.4560 -0.3458 23 14 15.2333 1.8118 -0.0886 24 1 14.5098 0.5156 -0.1281 25 1 16.2555 1.8407 -1.1655 26 1 15.8987 1.9680 1.2297 27 6 7.5348 4.0439 -0.0272 28 6 3.4345 1.3020 0.0000 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2244 2.3532 -0.0002 33 1 1.3927 4.5192 -0.0019 34 1 5.2938 5.7797 0.2333 35 1 4.2530 4.7362 -0.7692 36 1 5.3487 6.5898 -2.0791 37 1 5.7801 4.9669 -2.6700 38 1 7.4566 6.6558 -0.7577 39 1 7.7806 6.4381 -2.4942 40 1 9.9799 5.5077 -1.9660 41 1 9.7183 5.5998 -0.2078 42 1 9.9752 3.1392 -0.0407 43 1 10.2368 3.0471 -1.7989 44 1 12.0960 4.8773 -0.7177 45 1 15.3859 4.6485 -0.2161 46 1 7.9968 3.0706 0.1381 47 1 7.7333 4.6943 0.8246 48 1 4.0435 0.4100 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267888377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:23 Heat of formation + Delta-G solvation = -13.475836 kcal Electronic energy + Delta-G solvation = -28263.970625 eV Core-core repulsion = 24320.077108 eV Total energy + Delta-G solvation = -3943.893517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41336 -40.06474 -38.62270 -37.68016 -35.26549 -33.52754 -32.14159 -32.03716 -31.85231 -30.47750 -28.25683 -27.42959 -26.05569 -24.23578 -23.80038 -23.65364 -22.43642 -20.96437 -20.49962 -19.69075 -18.32590 -17.84548 -16.93545 -16.72935 -16.47038 -16.20785 -15.89171 -15.51160 -15.17172 -14.88745 -14.59162 -14.29822 -14.18639 -13.88292 -13.67660 -13.46942 -13.37838 -13.04046 -12.93754 -12.88274 -12.59968 -12.26087 -12.08193 -11.81175 -11.29169 -11.08377 -11.03675 -10.94394 -10.79254 -10.55727 -10.37729 -10.31449 -10.13295 -9.83132 -9.75072 -9.59251 -9.50431 -9.13924 -8.77224 -8.57678 -6.81304 -5.67631 -2.95392 0.21732 0.76436 2.41106 2.50983 2.96085 3.44445 3.50208 3.55802 3.58625 3.74201 4.05996 4.26613 4.48296 4.53386 4.58074 4.61932 4.66657 4.84924 4.87528 4.95238 4.98790 5.12005 5.13769 5.27962 5.36144 5.50220 5.53010 5.64177 5.66698 5.75432 5.78893 5.85901 5.88383 6.01555 6.07769 6.17227 6.20148 6.32928 6.41219 6.45229 6.53947 6.60197 6.68790 6.98969 7.02063 7.22157 7.40759 7.80900 8.04768 8.51982 9.62796 10.22069 10.56809 11.55607 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002215 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.787736 B =12635.812355 C =14020.641110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.166 3.834 4 C -0.246 4.246 5 C 0.130 3.870 6 N -0.472 5.472 7 C 0.122 3.878 8 C 0.566 3.434 9 O -0.526 6.526 10 N -0.586 5.586 11 C 0.072 3.928 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.094 4.094 15 H 0.073 0.927 16 C -0.118 4.118 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.234 4.234 20 H 0.071 0.929 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.111 3.889 28 C -0.143 4.143 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.064 0.936 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.888 0.506 -0.925 35.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.113 3.887 4 C -0.266 4.266 5 C -0.028 4.028 6 N -0.188 5.188 7 C -0.014 4.014 8 C 0.351 3.649 9 O -0.402 6.402 10 N -0.317 5.317 11 C -0.050 4.050 12 C -0.174 4.174 13 C -0.154 4.154 14 C -0.114 4.114 15 H 0.092 0.908 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.365 4.365 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.585 5.585 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.010 4.010 28 C -0.165 4.165 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.082 0.918 35 H 0.162 0.838 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.216 0.784 45 H 0.063 0.937 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -34.944 0.350 -0.791 34.955 hybrid contribution 0.145 -0.958 0.126 0.977 sum -34.799 -0.608 -0.664 34.810 Atomic orbital electron populations 1.23197 0.77385 1.04758 1.01750 1.86120 1.22153 1.25899 1.87549 1.19230 0.92101 0.84934 0.92484 1.22390 1.01840 0.93139 1.09281 1.22769 0.90053 0.97373 0.92561 1.67676 1.06713 1.29707 1.14714 1.21060 0.94464 0.88627 0.97222 1.17802 0.85600 0.83482 0.77969 1.90834 1.63182 1.36330 1.49845 1.47963 1.08683 1.08793 1.66287 1.23000 0.98892 0.87086 0.96070 1.21971 0.96495 1.00725 0.98189 1.21617 0.94607 0.97285 1.01903 1.21440 0.95280 0.96962 0.97717 0.90832 1.21731 0.92489 0.99300 1.02131 1.20721 0.85535 0.93883 0.97591 1.42388 1.01316 1.06852 1.87268 1.19320 0.88374 0.88392 1.40448 0.91122 1.24742 0.97060 0.96314 1.03227 1.69678 1.14473 1.16759 1.57576 0.86110 0.81402 0.81429 0.77286 1.20524 1.21947 1.21914 1.21921 0.78208 1.03238 0.97642 1.21411 0.92038 0.99806 1.03206 0.92136 0.92136 0.87564 0.83844 0.81540 0.91816 0.83844 0.91025 0.92021 0.91762 0.91699 0.91568 0.91793 0.96130 0.96490 0.78380 0.93691 0.88218 0.91068 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.84 101.05 0.99 1.07 16 2 O -0.31 -2.39 10.51 -18.94 -0.20 -2.59 16 3 C 0.17 1.41 6.73 -38.85 -0.26 1.14 16 4 C -0.25 -1.45 9.12 -39.19 -0.36 -1.81 16 5 C 0.13 0.82 11.17 -17.62 -0.20 0.62 16 6 N -0.47 -4.41 6.14 -9.87 -0.06 -4.47 16 7 C 0.12 1.43 6.57 -83.05 -0.55 0.88 16 8 C 0.57 8.25 7.65 -12.17 -0.09 8.16 16 9 O -0.53 -9.44 15.79 5.35 0.08 -9.35 16 10 N -0.59 -7.81 2.97 -173.76 -0.52 -8.33 16 11 C 0.07 0.74 5.88 -3.71 -0.02 0.72 16 12 C -0.14 -1.32 6.08 -26.61 -0.16 -1.49 16 13 C -0.12 -1.32 5.17 -26.69 -0.14 -1.46 16 14 C -0.09 -1.32 2.34 -90.50 -0.21 -1.53 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.12 -1.99 4.80 -26.73 -0.13 -2.12 16 17 C 0.15 3.25 6.02 -4.04 -0.02 3.22 16 18 N -0.73 -19.76 5.60 -59.91 -0.34 -20.09 16 19 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 20 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 22 N -0.94 -29.35 13.06 55.49 0.72 -28.62 16 23 Si 0.91 23.41 29.55 -169.99 -5.02 18.39 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 C 0.11 1.63 5.33 -3.71 -0.02 1.61 16 28 C -0.14 -1.55 9.59 -38.89 -0.37 -1.92 16 29 H 0.06 0.13 7.71 -51.93 -0.40 -0.27 16 30 H 0.06 0.12 7.71 -51.93 -0.40 -0.28 16 31 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.14 0.40 6.45 -52.49 -0.34 0.06 16 33 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.15 1.39 4.03 -83.55 -0.34 1.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.46 6.70 -51.93 -0.35 0.11 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.10 1.71 5.72 -51.93 -0.30 1.41 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.16 1.80 7.67 -52.49 -0.40 1.40 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -35.73 384.14 -8.78 -44.50 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.46 Total: 5.39 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.79 Total: -0.62 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.19 Total: -61.52 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.11 Total: -11.94 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.73 -8.78 -44.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.028 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds