Wall clock time and date at job start Tue Mar 31 2020 17:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35745 * 117.00325 * 2 1 4 4 C 1.39216 * 120.81082 * 359.97438 * 3 2 1 5 5 C 1.38319 * 119.28533 * 180.02562 * 4 3 2 6 6 N 1.31612 * 120.96945 * 359.72616 * 5 4 3 7 7 C 1.32797 * 121.78202 * 0.56718 * 6 5 4 8 8 C 1.48179 * 119.69987 * 179.71070 * 7 6 5 9 9 O 1.21513 * 120.00346 * 170.25613 * 8 7 6 10 10 N 1.34788 * 119.99938 * 350.25558 * 8 7 6 11 11 C 1.46925 * 120.62718 * 352.14941 * 10 8 7 12 12 C 1.53195 * 108.77649 * 233.63062 * 11 10 8 13 13 C 1.53041 * 109.31111 * 305.36946 * 12 11 10 14 14 C 1.53034 * 109.54043 * 61.36276 * 13 12 11 15 15 H 1.09002 * 109.52496 * 58.60161 * 14 13 12 16 16 C 1.52997 * 109.49819 * 178.68513 * 14 13 12 17 17 C 1.53001 * 109.47259 * 184.83727 * 16 14 13 18 18 N 1.46495 * 109.47490 * 179.97438 * 17 16 14 19 19 C 1.36940 * 120.00561 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99506 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46920 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46732 * 120.00045 * 23 21 19 26 26 H 1.48496 * 109.47213 * 240.00014 * 23 21 19 27 27 C 1.46923 * 120.63317 * 172.17239 * 10 8 7 28 28 C 1.39104 * 120.60362 * 359.42836 * 7 6 5 29 29 H 1.09001 * 109.47094 * 299.99401 * 1 2 3 30 30 H 1.08995 * 109.47351 * 59.99252 * 1 2 3 31 31 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.35711 * 0.04510 * 4 3 2 33 33 H 1.08001 * 119.50870 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.58563 * 113.84531 * 11 10 8 35 35 H 1.09000 * 109.58659 * 353.42183 * 11 10 8 36 36 H 1.08998 * 109.49664 * 185.41165 * 12 11 10 37 37 H 1.09000 * 109.51985 * 65.33492 * 12 11 10 38 38 H 1.09007 * 109.45813 * 301.34030 * 13 12 11 39 39 H 1.09002 * 109.45862 * 181.38767 * 13 12 11 40 40 H 1.08999 * 109.46928 * 304.83782 * 16 14 13 41 41 H 1.09001 * 109.47250 * 64.83813 * 16 14 13 42 42 H 1.08999 * 109.47196 * 299.99891 * 17 16 14 43 43 H 1.09001 * 109.46919 * 59.99883 * 17 16 14 44 44 H 0.97001 * 120.00239 * 0.02562 * 18 17 16 45 45 H 0.97003 * 119.99605 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58280 * 6.58146 * 27 10 8 47 47 H 1.08995 * 109.58919 * 246.16042 * 27 10 8 48 48 H 1.08001 * 120.50812 * 180.24761 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9644 3.6029 -0.0011 6 7 3.2793 3.6590 0.0043 7 6 4.0262 2.5610 -0.0007 8 6 5.5034 2.6779 -0.0007 9 8 6.1910 1.6912 0.1728 10 7 6.0844 3.8787 -0.1933 11 6 5.2792 5.0474 -0.5739 12 6 5.8778 5.6673 -1.8405 13 6 7.3582 5.9742 -1.6028 14 6 8.1081 4.6750 -1.3000 15 1 7.9900 3.9833 -2.1341 16 6 9.5935 4.9787 -1.0948 17 6 10.3616 3.6682 -0.9119 18 7 11.7840 3.9589 -0.7161 19 6 12.6730 2.9341 -0.5297 20 1 12.3256 1.9116 -0.5274 21 6 14.0207 3.2097 -0.3436 22 7 14.4440 4.4560 -0.3458 23 14 15.2333 1.8118 -0.0886 24 1 14.5098 0.5156 -0.1281 25 1 16.2555 1.8407 -1.1655 26 1 15.8987 1.9680 1.2297 27 6 7.5348 4.0439 -0.0272 28 6 3.4345 1.3020 0.0000 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2244 2.3532 -0.0002 33 1 1.3927 4.5192 -0.0019 34 1 5.2938 5.7797 0.2333 35 1 4.2530 4.7362 -0.7692 36 1 5.3487 6.5898 -2.0791 37 1 5.7801 4.9669 -2.6700 38 1 7.4566 6.6558 -0.7577 39 1 7.7806 6.4381 -2.4942 40 1 9.9799 5.5077 -1.9660 41 1 9.7183 5.5998 -0.2078 42 1 9.9752 3.1392 -0.0407 43 1 10.2368 3.0471 -1.7989 44 1 12.0960 4.8773 -0.7177 45 1 15.3859 4.6485 -0.2161 46 1 7.9968 3.0706 0.1381 47 1 7.7333 4.6943 0.8246 48 1 4.0435 0.4100 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267888377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:22 Heat of formation + Delta-G solvation = -37.628974 kcal Electronic energy + Delta-G solvation = -28265.017984 eV Core-core repulsion = 24320.077108 eV Total energy + Delta-G solvation = -3944.940876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15320 -40.93191 -39.32256 -38.78669 -36.97499 -35.05970 -33.46155 -32.76132 -32.62306 -32.10386 -29.05055 -28.59205 -27.02069 -25.89647 -24.58511 -24.42021 -23.94642 -22.20220 -21.68361 -20.66837 -19.24734 -18.99233 -18.55466 -17.37312 -17.21766 -16.95623 -16.79363 -16.60299 -16.48607 -16.08508 -15.59636 -15.49055 -15.22170 -15.14711 -14.91398 -14.71436 -14.60628 -14.25716 -14.13885 -13.87582 -13.41627 -13.37209 -12.99584 -12.86322 -12.61952 -12.51729 -12.35101 -12.26607 -12.10553 -11.97961 -11.89551 -11.77492 -11.61518 -11.42521 -11.19586 -10.95154 -10.41048 -10.17033 -9.84742 -9.63726 -9.03674 -7.98833 -5.28145 -0.50550 0.15945 1.44026 1.45480 1.56250 1.59347 1.71376 2.21138 2.53108 2.69881 2.98291 3.33863 3.56640 3.61060 3.71121 3.82344 3.90279 3.94399 4.04643 4.18231 4.21969 4.32185 4.34461 4.38912 4.41622 4.45524 4.52449 4.66318 4.68989 4.69691 4.75320 4.76695 4.88813 4.91934 4.93760 5.08743 5.11081 5.13335 5.22659 5.31273 5.35849 5.43500 5.45599 5.52316 5.76014 6.13945 6.24326 6.30282 6.63932 7.00034 7.29960 8.04847 8.30494 9.24759 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002215 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.787736 B =12635.812355 C =14020.641110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.161 3.839 4 C -0.224 4.224 5 C 0.136 3.864 6 N -0.479 5.479 7 C 0.105 3.895 8 C 0.556 3.444 9 O -0.578 6.578 10 N -0.585 5.585 11 C 0.069 3.931 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.083 4.083 15 H 0.060 0.940 16 C -0.103 4.103 17 C 0.150 3.850 18 N -0.746 5.746 19 C -0.250 4.250 20 H 0.069 0.931 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.976 3.024 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.113 3.887 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.185 0.815 33 H 0.213 0.787 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.014 0.986 43 H 0.009 0.991 44 H 0.376 0.624 45 H 0.253 0.747 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.429 1.950 -1.193 39.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.107 3.893 4 C -0.244 4.244 5 C -0.022 4.022 6 N -0.195 5.195 7 C -0.030 4.030 8 C 0.344 3.656 9 O -0.458 6.458 10 N -0.314 5.314 11 C -0.052 4.052 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.103 4.103 15 H 0.079 0.921 16 C -0.142 4.142 17 C 0.023 3.977 18 N -0.388 5.388 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.215 1.215 27 C -0.010 4.010 28 C -0.187 4.187 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.202 0.798 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.174 0.826 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.032 0.968 43 H 0.027 0.973 44 H 0.208 0.792 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -38.541 1.808 -1.072 38.598 hybrid contribution 1.063 -1.444 0.220 1.807 sum -37.478 0.363 -0.852 37.490 Atomic orbital electron populations 1.23556 0.74911 1.06306 1.03366 1.86101 1.24735 1.25915 1.87377 1.19278 0.91278 0.86318 0.92386 1.22818 1.03658 0.91657 1.06305 1.23545 0.88928 0.99300 0.90418 1.67553 1.08269 1.28444 1.15248 1.20526 0.92809 0.89693 0.99953 1.18386 0.87142 0.83068 0.77046 1.90787 1.64736 1.38004 1.52297 1.48093 1.08166 1.09534 1.65641 1.23280 0.99134 0.86053 0.96734 1.21959 0.95391 1.01888 0.97440 1.21599 0.95379 0.95335 1.02647 1.21317 0.93639 0.98532 0.96827 0.92139 1.21587 0.93709 0.96497 1.02356 1.20846 0.83655 0.96495 0.96670 1.42576 1.03028 1.05989 1.87251 1.19654 0.89343 0.88995 1.40211 0.91339 1.25604 0.98801 0.98958 1.03405 1.69821 1.14752 1.18652 1.58535 0.85042 0.78781 0.78681 0.77069 1.19531 1.21482 1.21539 1.21746 0.79495 1.01470 0.98259 1.21316 0.93599 0.98851 1.04977 0.90465 0.90359 0.86348 0.79807 0.77043 0.90674 0.82616 0.87827 0.92817 0.90775 0.90887 0.91280 0.91418 0.96823 0.97324 0.79219 0.93809 0.91737 0.90391 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.84 113.37 1.12 1.16 16 2 O -0.33 -4.82 10.51 -90.69 -0.95 -5.77 16 3 C 0.16 2.55 6.73 22.74 0.15 2.71 16 4 C -0.22 -1.80 9.12 22.52 0.21 -1.60 16 5 C 0.14 1.16 11.17 84.75 0.95 2.11 16 6 N -0.48 -8.02 6.14 -185.14 -1.14 -9.16 16 7 C 0.11 2.52 6.57 41.85 0.28 2.79 16 8 C 0.56 17.37 7.65 86.88 0.66 18.03 16 9 O -0.58 -23.02 15.79 -3.76 -0.06 -23.08 16 10 N -0.58 -15.97 2.97 -821.93 -2.44 -18.41 16 11 C 0.07 1.30 5.88 86.36 0.51 1.81 16 12 C -0.13 -2.19 6.08 30.67 0.19 -2.01 16 13 C -0.11 -2.33 5.17 30.62 0.16 -2.17 16 14 C -0.08 -2.37 2.34 -10.72 -0.03 -2.39 16 15 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.10 -3.54 4.80 30.59 0.15 -3.39 16 17 C 0.15 6.76 6.02 86.38 0.52 7.28 16 18 N -0.75 -41.38 5.60 -343.46 -1.92 -43.30 16 19 C -0.25 -15.19 9.99 84.03 0.84 -14.35 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 23 Si 0.98 48.77 29.55 68.60 2.03 50.80 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 C 0.11 3.45 5.33 86.36 0.46 3.91 16 28 C -0.16 -3.80 9.59 22.72 0.22 -3.58 16 29 H 0.08 0.04 7.71 -2.39 -0.02 0.02 16 30 H 0.08 0.02 7.71 -2.39 -0.02 0.01 16 31 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.18 -0.04 6.45 -2.91 -0.02 -0.06 16 33 H 0.21 -0.13 8.06 -2.91 -0.02 -0.15 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.16 2.65 4.03 -64.83 -0.26 2.39 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.01 0.65 6.70 -2.39 -0.02 0.63 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.38 21.56 7.67 -92.71 -0.71 20.85 16 45 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.06 2.43 5.72 -2.39 -0.01 2.42 16 47 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.13 3.54 7.67 -2.91 -0.02 3.52 16 Total: -1.00 -82.03 384.14 2.64 -79.38 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.01 Total: 24.60 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.84 Total: 6.20 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -5.22 Total: -132.13 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.01 Total: -28.85 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -82.03 2.64 -79.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.754 kcal (2) G-P(sol) polarization free energy of solvation -82.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds