Wall clock time and date at job start Tue Mar 31 2020 17:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35492 * 117.00351 * 2 1 4 4 C 1.39175 * 119.52625 * 180.02562 * 3 2 1 5 5 C 1.37950 * 119.26348 * 180.02562 * 4 3 2 6 6 C 1.40288 * 118.35625 * 359.97438 * 5 4 3 7 7 C 1.47621 * 120.49509 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99934 * 39.83999 * 7 6 5 9 9 N 1.34779 * 119.99662 * 219.83651 * 7 6 5 10 10 C 1.46926 * 120.63173 * 5.02846 * 9 7 6 11 11 C 1.53190 * 108.77623 * 126.36760 * 10 9 7 12 12 C 1.53034 * 109.31307 * 54.63272 * 11 10 9 13 13 C 1.53043 * 109.54182 * 298.63361 * 12 11 10 14 14 H 1.09001 * 109.49631 * 301.41786 * 13 12 11 15 15 C 1.52993 * 109.50022 * 181.35034 * 13 12 11 16 16 C 1.53005 * 109.47150 * 174.99778 * 15 13 12 17 17 N 1.46499 * 109.47305 * 179.97438 * 16 15 13 18 18 C 1.36939 * 120.00014 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00127 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99806 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99903 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99663 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47023 * 119.99830 * 22 20 18 25 25 H 1.48497 * 109.46687 * 239.99724 * 22 20 18 26 26 C 1.46931 * 120.62707 * 184.74339 * 9 7 6 27 27 C 1.39522 * 119.00464 * 359.97438 * 6 5 4 28 28 N 1.31665 * 120.62466 * 0.02562 * 27 6 5 29 29 H 1.09001 * 109.46968 * 59.99651 * 1 2 3 30 30 H 1.09000 * 109.47598 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 300.00077 * 1 2 3 32 32 H 1.08001 * 120.36579 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.81990 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.58071 * 246.15265 * 10 9 7 35 35 H 1.08999 * 109.58262 * 6.43176 * 10 9 7 36 36 H 1.09001 * 109.49494 * 174.58820 * 11 10 9 37 37 H 1.09006 * 109.49667 * 294.68004 * 11 10 9 38 38 H 1.08995 * 109.46202 * 58.65553 * 12 11 10 39 39 H 1.09002 * 109.46028 * 178.62555 * 12 11 10 40 40 H 1.08995 * 109.47204 * 294.99695 * 15 13 12 41 41 H 1.08997 * 109.47504 * 55.00300 * 15 13 12 42 42 H 1.08999 * 109.47217 * 300.00504 * 16 15 13 43 43 H 1.09004 * 109.46752 * 60.00524 * 16 15 13 44 44 H 0.96997 * 120.00030 * 0.02562 * 17 16 15 45 45 H 0.97006 * 119.99840 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58568 * 353.41918 * 26 9 7 47 47 H 1.08993 * 109.58276 * 113.84999 * 26 9 7 48 48 H 1.07998 * 119.68216 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4346 1.2685 -0.0005 5 6 4.0553 2.5004 0.0000 6 6 3.2526 3.6510 0.0005 7 6 3.8672 4.9932 0.0006 8 8 4.8551 5.2094 -0.6743 9 7 3.3330 5.9788 0.7487 10 6 2.2074 5.7062 1.6528 11 6 2.5743 6.1940 3.0579 12 6 2.9846 7.6668 2.9913 13 6 4.2140 7.8156 2.0921 14 1 5.0288 7.2084 2.4865 15 6 4.6436 9.2834 2.0531 16 6 5.9435 9.4134 1.2565 17 7 6.3546 10.8190 1.2186 18 6 7.4974 11.1806 0.5565 19 1 8.0959 10.4295 0.0626 20 6 7.8871 12.5125 0.5210 21 7 7.1580 13.4277 1.1234 22 14 9.4457 13.0057 -0.3828 23 1 10.0795 11.7987 -0.9716 24 1 9.1079 13.9656 -1.4644 25 1 10.3889 13.6449 0.5695 26 6 3.8694 7.3450 0.6802 27 6 1.8648 3.5076 -0.0001 28 7 1.3140 2.3116 -0.0006 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0211 0.3615 -0.0014 33 1 5.1326 2.5772 -0.0008 34 1 1.3210 6.2350 1.3023 35 1 2.0086 4.6348 1.6759 36 1 1.7129 6.0857 3.7170 37 1 3.4046 5.6021 3.4432 38 1 2.1627 8.2546 2.5828 39 1 3.2228 8.0231 3.9935 40 1 3.8643 9.8775 1.5760 41 1 4.8032 9.6425 3.0698 42 1 6.7229 8.8192 1.7336 43 1 5.7839 9.0544 0.2398 44 1 5.8172 11.4936 1.6626 45 1 7.4302 14.3585 1.0983 46 1 4.7684 7.3542 0.0638 47 1 3.1213 8.0100 0.2489 48 1 1.2364 4.3859 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267890193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:41 Heat of formation + Delta-G solvation = -25.327596 kcal Electronic energy + Delta-G solvation = -28247.552872 eV Core-core repulsion = 24303.145424 eV Total energy + Delta-G solvation = -3944.407448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40224 -40.17675 -38.37623 -37.64659 -35.39127 -33.63932 -33.02233 -32.20640 -31.49690 -30.50316 -28.04519 -27.34619 -26.03750 -24.36152 -24.10415 -23.42642 -22.57892 -20.99904 -20.42611 -19.57026 -18.87421 -18.02248 -17.26885 -16.94863 -16.55211 -16.24271 -15.40152 -15.24186 -15.01070 -14.75998 -14.63690 -14.47468 -13.91160 -13.83823 -13.65605 -13.58055 -13.51232 -13.13810 -13.07926 -12.99415 -12.68305 -12.34234 -12.17091 -11.68675 -11.40718 -11.15364 -11.10614 -11.03143 -10.83753 -10.64977 -10.43994 -10.41576 -10.39109 -10.20759 -9.90670 -9.84534 -9.61330 -8.98497 -8.81333 -8.74790 -6.85773 -5.71550 -2.99533 0.38526 0.72705 2.49863 2.56052 2.76610 3.31977 3.47424 3.53225 3.55781 3.72380 4.14853 4.34732 4.50033 4.56820 4.62733 4.65257 4.71283 4.77606 4.83448 4.85879 4.93605 5.08502 5.13872 5.15067 5.19199 5.34865 5.40554 5.56059 5.58439 5.60745 5.62823 5.71177 5.78735 5.83870 5.88557 5.98216 6.03892 6.21374 6.25257 6.34720 6.45656 6.49925 6.67391 6.92218 6.95346 7.19208 7.25464 7.77104 7.96926 8.47929 9.58915 10.17622 10.52241 11.51609 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002098 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.641851 B =13343.943969 C =14245.331039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.336 3.664 4 C -0.193 4.193 5 C 0.011 3.989 6 C -0.217 4.217 7 C 0.566 3.434 8 O -0.527 6.527 9 N -0.604 5.604 10 C 0.096 3.904 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.096 4.096 14 H 0.074 0.926 15 C -0.118 4.118 16 C 0.150 3.850 17 N -0.734 5.734 18 C -0.236 4.236 19 H 0.071 0.929 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.114 3.886 27 C 0.173 3.827 28 N -0.542 5.542 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.021 0.979 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.939 -27.131 2.726 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.158 3.842 4 C -0.214 4.214 5 C -0.014 4.014 6 C -0.223 4.223 7 C 0.353 3.647 8 O -0.404 6.404 9 N -0.337 5.337 10 C -0.027 4.027 11 C -0.172 4.172 12 C -0.153 4.153 13 C -0.116 4.116 14 H 0.092 0.908 15 C -0.156 4.156 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.007 4.007 27 C 0.016 3.984 28 N -0.266 5.266 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.216 0.784 45 H 0.063 0.937 46 H 0.120 0.880 47 H 0.090 0.910 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.063 -27.405 2.248 32.899 hybrid contribution 1.220 0.786 -0.255 1.473 sum -16.842 -26.619 1.994 31.563 Atomic orbital electron populations 1.22930 0.76753 1.03240 1.02765 1.86220 1.23341 1.24441 1.87063 1.20078 0.89505 0.84736 0.89918 1.21041 0.91861 0.99618 1.08871 1.21489 1.01109 0.89695 0.89140 1.20800 0.95254 0.94925 1.11317 1.17959 0.83347 0.83537 0.79843 1.90843 1.25059 1.82194 1.42278 1.48050 1.34207 1.09777 1.41680 1.22105 0.88952 1.01506 0.90115 1.21917 1.01952 0.97473 0.95865 1.21601 0.97974 0.95364 1.00384 1.21382 0.97731 0.97703 0.94742 0.90768 1.21727 0.98776 0.93704 1.01439 1.20718 0.92658 0.87896 0.96451 1.42379 1.28404 1.02208 1.64823 1.19314 0.99843 0.92149 1.25392 0.91118 1.24743 0.99223 0.95886 1.01394 1.69674 1.39592 1.00637 1.48522 0.86111 0.82947 0.78159 0.79006 1.20521 1.21892 1.21920 1.21796 1.00734 0.80123 0.98039 1.22770 0.91508 0.94039 0.90082 1.67348 1.40426 0.98549 1.20283 0.92014 0.88406 0.92007 0.83279 0.83022 0.90816 0.89620 0.90674 0.91462 0.91565 0.91336 0.91737 0.91508 0.96512 0.96150 0.78373 0.93658 0.88005 0.91048 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.37 101.05 1.05 1.26 16 2 O -0.30 -2.52 10.46 -18.17 -0.19 -2.71 16 3 C 0.34 3.05 7.49 -16.96 -0.13 2.92 16 4 C -0.19 -1.57 10.02 -39.34 -0.39 -1.97 16 5 C 0.01 0.10 9.79 -38.92 -0.38 -0.28 16 6 C -0.22 -2.20 5.17 -104.82 -0.54 -2.75 16 7 C 0.57 7.24 7.34 -12.43 -0.09 7.15 16 8 O -0.53 -8.93 16.35 5.30 0.09 -8.85 16 9 N -0.60 -6.72 2.98 -174.22 -0.52 -7.24 16 10 C 0.10 0.74 4.90 -3.71 -0.02 0.73 16 11 C -0.13 -1.05 6.08 -26.62 -0.16 -1.21 16 12 C -0.12 -1.11 5.17 -26.69 -0.14 -1.25 16 13 C -0.10 -1.20 2.32 -90.72 -0.21 -1.41 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 15 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 16 C 0.15 3.12 6.02 -4.04 -0.02 3.09 16 17 N -0.73 -19.25 5.60 -59.90 -0.34 -19.58 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 21 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 22 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 C 0.11 1.48 5.31 -3.93 -0.02 1.46 16 27 C 0.17 1.50 8.54 -17.14 -0.15 1.35 16 28 N -0.54 -4.98 9.18 -12.97 -0.12 -5.10 16 29 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 8.10 -51.93 -0.42 -0.09 16 32 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.09 0.59 4.64 -51.93 -0.24 0.35 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.44 6.70 -51.93 -0.35 0.09 16 44 H 0.38 10.42 7.67 -40.82 -0.31 10.10 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.10 1.62 5.71 -51.93 -0.30 1.32 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.17 1.12 6.50 -52.49 -0.34 0.78 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -34.98 386.54 -8.56 -43.53 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.42 Total: 4.74 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.58 Total: -0.50 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.25 Total: -60.09 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.10 Total: -11.56 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.98 -8.56 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267890193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.205 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds