Wall clock time and date at job start Tue Mar 31 2020 17:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35747 * 117.00466 * 2 1 4 4 C 1.39219 * 120.81015 * 359.97438 * 3 2 1 5 5 C 1.38307 * 119.28950 * 180.02562 * 4 3 2 6 6 N 1.31615 * 120.96716 * 359.97438 * 5 4 3 7 7 C 1.32796 * 121.78694 * 359.97438 * 6 5 4 8 8 C 1.48184 * 119.70027 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99599 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00027 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 19 19 C 1.52997 * 109.47232 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.47349 * 295.00017 * 19 17 16 21 21 C 1.36932 * 120.00261 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99875 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00058 * 179.97438 * 21 20 19 24 24 N 1.31613 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99998 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46953 * 60.00493 * 25 23 21 27 27 H 1.48497 * 109.46949 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47473 * 300.00543 * 25 23 21 29 29 C 1.39106 * 120.59977 * 0.26330 * 7 6 5 30 30 H 1.09000 * 109.47614 * 300.00200 * 1 2 3 31 31 H 1.09003 * 109.47270 * 60.00236 * 1 2 3 32 32 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.35666 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.51678 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 38 38 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 40 40 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 41 41 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 42 42 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 44 44 H 1.09008 * 109.47017 * 54.99755 * 19 17 16 45 45 H 1.09006 * 109.47500 * 174.99757 * 19 17 16 46 46 H 0.97004 * 119.99603 * 359.97438 * 20 19 17 47 47 H 0.97007 * 119.99824 * 179.97438 * 24 23 21 48 48 H 1.08002 * 120.50709 * 179.71825 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2792 3.6590 -0.0006 7 6 4.0262 2.5610 0.0010 8 6 5.5034 2.6780 0.0009 9 8 6.1921 1.6769 0.0018 10 7 6.0830 3.8947 -0.0002 11 6 7.5434 4.0104 0.0003 12 1 7.9723 3.1993 -0.5882 13 6 8.0612 3.9268 1.4376 14 6 9.5864 4.0483 1.4381 15 6 9.9912 5.3914 0.8274 16 6 9.4735 5.4749 -0.6099 17 6 7.9484 5.3535 -0.6104 18 1 7.5191 6.1644 -0.0219 19 6 7.4305 5.4377 -2.0476 20 7 7.7136 6.7682 -2.5917 21 6 7.3396 7.0782 -3.8719 22 1 6.8356 6.3420 -4.4805 23 6 7.6073 8.3390 -4.3872 24 7 8.2211 9.2363 -3.6453 25 14 7.0978 8.7617 -6.1339 26 1 5.6250 8.6253 -6.2666 27 1 7.4957 10.1590 -6.4412 28 1 7.7680 7.8366 -7.0827 29 6 3.4345 1.3020 -0.0034 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2243 2.3533 -0.0014 34 1 1.3926 4.5192 -0.0019 35 1 5.5332 4.6939 -0.0013 36 1 7.7723 2.9701 1.8728 37 1 7.6323 4.7380 2.0260 38 1 9.9553 3.9883 2.4620 39 1 10.0156 3.2374 0.8496 40 1 9.5620 6.2022 1.4159 41 1 11.0778 5.4781 0.8282 42 1 9.7623 6.4316 -1.0451 43 1 9.9028 4.6640 -1.1984 44 1 7.9269 4.6827 -2.6575 45 1 6.3546 5.2626 -2.0571 46 1 8.1659 7.4295 -2.0449 47 1 8.4086 10.1173 -4.0055 48 1 4.0435 0.4101 -0.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268766741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:49 Heat of formation + Delta-G solvation = -41.310967 kcal Electronic energy + Delta-G solvation = -28616.420477 eV Core-core repulsion = 24671.319938 eV Total energy + Delta-G solvation = -3945.100539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10389 -39.92550 -38.66055 -37.80750 -34.56321 -34.12422 -31.92988 -31.87504 -31.71602 -29.61277 -29.14054 -28.04088 -25.31004 -24.45258 -23.66437 -22.96402 -22.04078 -20.59097 -20.49200 -19.87373 -18.69341 -17.58750 -17.20807 -16.46843 -16.32640 -16.12217 -15.78473 -15.16243 -15.02026 -14.71816 -14.51661 -14.24207 -14.10541 -13.83932 -13.72670 -13.54978 -13.17508 -12.96453 -12.87095 -12.59957 -12.35642 -12.03147 -11.78150 -11.74397 -11.47761 -11.05209 -10.84042 -10.83531 -10.66188 -10.47410 -10.22187 -10.14049 -10.04400 -9.90816 -9.70437 -9.58879 -9.54441 -9.26233 -8.86600 -8.76442 -6.85879 -5.71955 -2.99596 0.39795 0.98803 2.56812 2.67981 3.22783 3.47200 3.51308 3.52513 3.69646 4.00659 4.24303 4.47604 4.61476 4.63643 4.65545 4.79734 4.86275 4.92142 4.98511 5.00621 5.14403 5.30488 5.31925 5.42245 5.47371 5.62094 5.64188 5.66807 5.69306 5.73429 5.80806 5.95233 6.06972 6.17290 6.21283 6.26553 6.30806 6.34466 6.45536 6.60518 6.62398 6.75350 6.76014 6.87158 6.97586 7.43671 7.73196 7.74906 8.24240 8.47429 9.58529 10.16893 10.52117 11.51000 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.003191 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.273839 B = 8771.852761 C =11245.039074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.161 3.839 4 C -0.245 4.245 5 C 0.139 3.861 6 N -0.478 5.478 7 C 0.119 3.881 8 C 0.571 3.429 9 O -0.535 6.535 10 N -0.695 5.695 11 C 0.152 3.848 12 H 0.089 0.911 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.107 4.107 17 C -0.099 4.099 18 H 0.076 0.924 19 C 0.158 3.842 20 N -0.730 5.730 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 C -0.146 4.146 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -15.578 13.481 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.107 3.893 4 C -0.266 4.266 5 C -0.020 4.020 6 N -0.192 5.192 7 C -0.018 4.018 8 C 0.355 3.645 9 O -0.412 6.412 10 N -0.345 5.345 11 C 0.047 3.953 12 H 0.107 0.893 13 C -0.165 4.165 14 C -0.152 4.152 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.119 4.119 18 H 0.094 0.906 19 C 0.030 3.970 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.086 0.914 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.167 4.167 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.552 -15.717 13.303 23.610 hybrid contribution -1.320 0.227 -0.887 1.607 sum -12.872 -15.489 12.416 23.659 Atomic orbital electron populations 1.23174 0.77543 1.04568 1.01773 1.86093 1.22033 1.25997 1.87811 1.19198 0.92125 0.84833 0.93096 1.22420 1.01817 0.93214 1.09197 1.22624 0.89647 0.97275 0.92484 1.67649 1.07392 1.31151 1.13055 1.21035 0.94549 0.88604 0.97625 1.17737 0.85588 0.84074 0.77074 1.90778 1.63319 1.36596 1.50476 1.45943 1.08114 1.08237 1.72174 1.21100 0.78534 0.99155 0.96467 0.89254 1.21899 0.96116 1.01998 0.96476 1.21483 0.95001 0.98149 1.00593 1.21600 1.00403 0.97037 0.96871 1.21494 0.93816 1.03392 0.95769 1.21589 0.96853 0.95398 0.98028 0.90572 1.20678 0.96876 0.89178 0.90267 1.42343 1.71163 1.10001 1.13921 1.19179 1.30880 0.96724 0.89933 0.91412 1.24706 1.01586 0.96484 0.98234 1.69645 1.47120 1.05383 1.36216 0.86283 0.78144 0.77123 0.84746 1.21349 1.21732 1.21346 1.21390 0.91958 0.99790 1.03600 0.92217 0.92148 0.87700 0.83889 0.81589 0.74955 0.91771 0.91780 0.92163 0.91868 0.92001 0.92101 0.90189 0.92024 0.96442 0.96155 0.78222 0.93548 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.84 10.51 -18.95 -0.20 -3.04 16 3 C 0.16 1.66 6.73 -38.85 -0.26 1.40 16 4 C -0.25 -2.07 9.12 -39.19 -0.36 -2.43 16 5 C 0.14 1.34 11.17 -17.62 -0.20 1.15 16 6 N -0.48 -6.08 9.54 -9.87 -0.09 -6.17 16 7 C 0.12 1.63 6.75 -83.04 -0.56 1.07 16 8 C 0.57 8.77 7.78 -12.18 -0.09 8.67 16 9 O -0.54 -9.34 15.98 5.35 0.09 -9.26 16 10 N -0.69 -10.14 4.29 -54.64 -0.23 -10.37 16 11 C 0.15 2.22 1.90 -67.93 -0.13 2.09 16 12 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 13 C -0.13 -1.61 5.49 -26.73 -0.15 -1.76 16 14 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 15 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 16 C -0.11 -1.66 5.08 -26.73 -0.14 -1.80 16 17 C -0.10 -1.61 1.80 -90.62 -0.16 -1.78 16 18 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 19 C 0.16 3.24 5.57 -4.04 -0.02 3.22 16 20 N -0.73 -18.50 5.33 -59.90 -0.32 -18.82 16 21 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 25 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C -0.15 -1.80 9.60 -38.89 -0.37 -2.18 16 30 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 31 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.14 0.74 6.45 -52.48 -0.34 0.40 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.41 5.91 7.72 -40.82 -0.32 5.59 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.44 7.18 -51.93 -0.37 1.07 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 45 H 0.02 0.43 7.30 -51.93 -0.38 0.05 16 46 H 0.38 10.11 6.85 -40.82 -0.28 9.83 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.16 1.92 7.64 -52.49 -0.40 1.52 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -33.47 389.49 -8.68 -42.14 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.48 Total: 11.34 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.01 Total: -1.78 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.08 Total: -62.98 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.11 Total: -12.29 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.47 -8.68 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268766741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.834 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds