Wall clock time and date at job start Tue Mar 31 2020 17:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35747 * 117.00466 * 2 1 4 4 C 1.39219 * 120.81015 * 359.97438 * 3 2 1 5 5 C 1.38307 * 119.28950 * 180.02562 * 4 3 2 6 6 N 1.31615 * 120.96716 * 359.97438 * 5 4 3 7 7 C 1.32796 * 121.78694 * 359.97438 * 6 5 4 8 8 C 1.48184 * 119.70027 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99599 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00027 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 19 19 C 1.52997 * 109.47232 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.47349 * 295.00017 * 19 17 16 21 21 C 1.36932 * 120.00261 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99875 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00058 * 179.97438 * 21 20 19 24 24 N 1.31613 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99998 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46953 * 60.00493 * 25 23 21 27 27 H 1.48497 * 109.46949 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47473 * 300.00543 * 25 23 21 29 29 C 1.39106 * 120.59977 * 0.26330 * 7 6 5 30 30 H 1.09000 * 109.47614 * 300.00200 * 1 2 3 31 31 H 1.09003 * 109.47270 * 60.00236 * 1 2 3 32 32 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.35666 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.51678 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 38 38 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 40 40 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 41 41 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 42 42 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 44 44 H 1.09008 * 109.47017 * 54.99755 * 19 17 16 45 45 H 1.09006 * 109.47500 * 174.99757 * 19 17 16 46 46 H 0.97004 * 119.99603 * 359.97438 * 20 19 17 47 47 H 0.97007 * 119.99824 * 179.97438 * 24 23 21 48 48 H 1.08002 * 120.50709 * 179.71825 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2792 3.6590 -0.0006 7 6 4.0262 2.5610 0.0010 8 6 5.5034 2.6780 0.0009 9 8 6.1921 1.6769 0.0018 10 7 6.0830 3.8947 -0.0002 11 6 7.5434 4.0104 0.0003 12 1 7.9723 3.1993 -0.5882 13 6 8.0612 3.9268 1.4376 14 6 9.5864 4.0483 1.4381 15 6 9.9912 5.3914 0.8274 16 6 9.4735 5.4749 -0.6099 17 6 7.9484 5.3535 -0.6104 18 1 7.5191 6.1644 -0.0219 19 6 7.4305 5.4377 -2.0476 20 7 7.7136 6.7682 -2.5917 21 6 7.3396 7.0782 -3.8719 22 1 6.8356 6.3420 -4.4805 23 6 7.6073 8.3390 -4.3872 24 7 8.2211 9.2363 -3.6453 25 14 7.0978 8.7617 -6.1339 26 1 5.6250 8.6253 -6.2666 27 1 7.4957 10.1590 -6.4412 28 1 7.7680 7.8366 -7.0827 29 6 3.4345 1.3020 -0.0034 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2243 2.3533 -0.0014 34 1 1.3926 4.5192 -0.0019 35 1 5.5332 4.6939 -0.0013 36 1 7.7723 2.9701 1.8728 37 1 7.6323 4.7380 2.0260 38 1 9.9553 3.9883 2.4620 39 1 10.0156 3.2374 0.8496 40 1 9.5620 6.2022 1.4159 41 1 11.0778 5.4781 0.8282 42 1 9.7623 6.4316 -1.0451 43 1 9.9028 4.6640 -1.1984 44 1 7.9269 4.6827 -2.6575 45 1 6.3546 5.2626 -2.0571 46 1 8.1659 7.4295 -2.0449 47 1 8.4086 10.1173 -4.0055 48 1 4.0435 0.4101 -0.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268766741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:48 Heat of formation + Delta-G solvation = -63.876196 kcal Electronic energy + Delta-G solvation = -28617.398978 eV Core-core repulsion = 24671.319938 eV Total energy + Delta-G solvation = -3946.079041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98362 -41.00206 -39.61464 -38.86406 -36.42467 -35.30175 -33.69291 -32.72509 -32.61489 -31.22126 -30.37178 -28.53669 -27.00967 -25.46599 -24.72407 -24.45452 -23.19557 -21.99300 -21.61701 -20.98245 -19.72249 -19.13389 -18.42442 -17.55830 -17.07664 -16.93240 -16.72993 -16.69610 -16.19073 -16.02446 -15.60321 -15.49461 -15.26940 -15.08615 -14.81340 -14.80146 -14.65384 -14.39311 -14.03403 -13.69507 -13.38778 -13.31782 -12.94159 -12.72602 -12.67994 -12.55323 -12.34272 -12.22686 -12.12875 -11.92943 -11.85335 -11.63493 -11.38887 -11.21734 -11.11452 -10.90933 -10.68308 -10.42178 -10.03068 -9.99400 -8.98347 -7.94312 -5.22580 -0.48873 0.18648 1.46541 1.49508 1.55770 1.63421 1.80205 2.28689 2.56007 2.77442 3.07963 3.38433 3.54505 3.56768 3.76039 3.79226 3.93224 3.95363 4.09214 4.12913 4.26439 4.32629 4.37593 4.38650 4.45263 4.47379 4.50281 4.52511 4.57348 4.67762 4.74874 4.85002 4.89027 4.90630 5.05113 5.11934 5.15193 5.25584 5.29733 5.31232 5.32973 5.43781 5.47097 5.49522 5.60392 6.12184 6.27707 6.36634 6.76542 7.07744 7.34727 8.09368 8.35580 9.28725 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.003191 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.273839 B = 8771.852761 C =11245.039074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.159 3.841 4 C -0.225 4.225 5 C 0.133 3.867 6 N -0.500 5.500 7 C 0.098 3.902 8 C 0.569 3.431 9 O -0.565 6.565 10 N -0.693 5.693 11 C 0.158 3.842 12 H 0.072 0.928 13 C -0.119 4.119 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.084 4.084 18 H 0.078 0.922 19 C 0.161 3.839 20 N -0.737 5.737 21 C -0.248 4.248 22 H 0.068 0.932 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.281 1.281 29 C -0.160 4.160 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.183 0.817 34 H 0.199 0.801 35 H 0.415 0.585 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.006 0.994 45 H 0.018 0.982 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 -15.900 14.178 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.246 4.246 5 C -0.026 4.026 6 N -0.215 5.215 7 C -0.038 4.038 8 C 0.354 3.646 9 O -0.444 6.444 10 N -0.342 5.342 11 C 0.054 3.946 12 H 0.091 0.909 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.104 4.104 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.381 5.381 21 C -0.379 4.379 22 H 0.086 0.914 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.183 4.183 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.200 0.800 34 H 0.215 0.785 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.035 0.965 46 H 0.210 0.790 47 H 0.061 0.939 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.629 -16.069 14.008 25.302 hybrid contribution -0.824 0.241 -1.113 1.406 sum -14.453 -15.827 12.895 25.014 Atomic orbital electron populations 1.23547 0.75073 1.06357 1.03177 1.86087 1.24568 1.25526 1.87501 1.19245 0.91511 0.86088 0.92657 1.22791 1.03608 0.91756 1.06429 1.23243 0.88768 0.99150 0.91425 1.67609 1.08997 1.30887 1.14025 1.20731 0.93552 0.89502 1.00049 1.18076 0.86624 0.83637 0.76271 1.90743 1.64306 1.37381 1.51975 1.45930 1.08025 1.08273 1.71977 1.20994 0.78784 0.97212 0.97640 0.90941 1.21841 0.96997 1.02193 0.94682 1.21471 0.93982 0.97336 1.01919 1.21544 1.01188 0.97890 0.94496 1.21437 0.93207 1.01619 0.97974 1.21424 0.97348 0.96457 0.95142 0.90414 1.20742 0.96592 0.86638 0.92645 1.42474 1.70946 1.11424 1.13221 1.19525 1.30396 0.96877 0.91138 0.91450 1.25504 1.02135 0.96473 1.02205 1.69795 1.48411 1.05536 1.37876 0.85251 0.78066 0.76601 0.80076 1.20404 1.21798 1.20725 1.21372 0.93374 0.98962 1.04572 0.90528 0.90859 0.85974 0.79951 0.78450 0.74763 0.92072 0.90792 0.89721 0.92007 0.91435 0.90721 0.92905 0.92496 0.97638 0.96460 0.79023 0.93903 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.48 10.51 -90.72 -0.95 -6.43 16 3 C 0.16 3.09 6.73 22.74 0.15 3.24 16 4 C -0.23 -3.16 9.12 22.52 0.21 -2.95 16 5 C 0.13 2.28 11.17 84.74 0.95 3.23 16 6 N -0.50 -12.48 9.54 -185.14 -1.77 -14.25 16 7 C 0.10 2.74 6.75 41.85 0.28 3.03 16 8 C 0.57 18.16 7.78 86.89 0.68 18.84 16 9 O -0.56 -20.70 15.98 -3.76 -0.06 -20.76 16 10 N -0.69 -20.76 4.29 -445.09 -1.91 -22.68 16 11 C 0.16 4.71 1.90 44.99 0.09 4.80 16 12 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 13 C -0.12 -2.92 5.49 30.59 0.17 -2.75 16 14 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 15 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 16 C -0.10 -3.29 5.08 30.59 0.16 -3.14 16 17 C -0.08 -2.79 1.80 -10.79 -0.02 -2.81 16 18 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 19 C 0.16 6.81 5.57 86.38 0.48 7.29 16 20 N -0.74 -38.35 5.33 -343.43 -1.83 -40.18 16 21 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 22 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 24 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 25 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 29 C -0.16 -4.07 9.60 22.72 0.22 -3.86 16 30 H 0.08 0.26 7.71 -2.39 -0.02 0.24 16 31 H 0.07 0.31 7.71 -2.39 -0.02 0.29 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.18 1.03 6.45 -2.91 -0.02 1.01 16 34 H 0.20 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.42 12.12 7.72 -92.71 -0.72 11.40 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.05 1.96 7.18 -2.39 -0.02 1.94 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.02 0.76 7.30 -2.38 -0.02 0.74 16 46 H 0.38 20.45 6.85 -92.71 -0.64 19.81 16 47 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 48 H 0.14 3.82 7.64 -2.91 -0.02 3.79 16 Total: -1.00 -73.92 389.49 1.55 -72.37 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.37 Total: 37.76 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.14 Total: 4.28 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -5.23 Total: -136.13 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.01 Total: -27.19 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -73.92 1.55 -72.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268766741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.493 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds