Wall clock time and date at job start Tue Mar 31 2020 17:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35746 * 117.00436 * 2 1 4 4 C 1.39214 * 120.80989 * 359.97438 * 3 2 1 5 5 C 1.38318 * 119.28451 * 180.02562 * 4 3 2 6 6 N 1.31618 * 120.96833 * 359.72495 * 5 4 3 7 7 C 1.32791 * 121.78373 * 0.56572 * 6 5 4 8 8 C 1.48186 * 119.69917 * 179.70911 * 7 6 5 9 9 O 1.21517 * 120.00120 * 179.72735 * 8 7 6 10 10 N 1.34777 * 119.99690 * 359.72890 * 8 7 6 11 11 C 1.46507 * 119.99542 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46564 * 324.99950 * 11 10 8 13 13 C 1.52997 * 109.47235 * 84.99810 * 11 10 8 14 14 C 1.53006 * 109.47164 * 59.99744 * 13 11 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 14 13 11 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 13 17 17 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 18 18 H 1.08996 * 109.47134 * 59.99508 * 17 16 15 19 19 C 1.52995 * 109.47577 * 180.02562 * 17 16 15 20 20 N 1.46504 * 109.46737 * 294.99984 * 19 17 16 21 21 C 1.36938 * 119.99997 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00141 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99791 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00576 * 0.02562 * 23 21 20 25 25 Si 1.86811 * 119.99660 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47007 * 89.99968 * 25 23 21 27 27 H 1.48507 * 109.46672 * 209.99885 * 25 23 21 28 28 H 1.48499 * 109.46881 * 329.99913 * 25 23 21 29 29 C 1.39104 * 120.60231 * 359.43727 * 7 6 5 30 30 H 1.09004 * 109.47039 * 59.99530 * 1 2 3 31 31 H 1.09002 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46872 * 300.00437 * 1 2 3 33 33 H 1.07994 * 120.35998 * 0.04407 * 4 3 2 34 34 H 1.08000 * 119.51379 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00012 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46922 * 299.99993 * 13 11 10 37 37 H 1.09000 * 109.47140 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.46955 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.47050 * 300.00004 * 14 13 11 40 40 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 43 43 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.47220 * 54.99171 * 19 17 16 45 45 H 1.08991 * 109.47712 * 174.99863 * 19 17 16 46 46 H 0.97003 * 120.00242 * 359.97438 * 20 19 17 47 47 H 0.96994 * 120.00409 * 179.97438 * 24 23 21 48 48 H 1.08005 * 120.51038 * 180.29792 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9644 3.6029 -0.0011 6 7 3.2794 3.6589 0.0044 7 6 4.0263 2.5609 -0.0006 8 6 5.5035 2.6778 -0.0007 9 8 6.1922 1.6767 -0.0002 10 7 6.0831 3.8946 -0.0012 11 6 7.5436 4.0102 -0.0018 12 1 7.9724 3.1997 0.5877 13 6 8.0614 3.9246 -1.4390 14 6 7.4594 5.0621 -2.2665 15 6 7.8649 6.4058 -1.6573 16 6 7.3471 6.4913 -0.2202 17 6 7.9491 5.3538 0.6073 18 1 9.0357 5.4398 0.6068 19 6 7.4309 5.4389 2.0443 20 7 7.9191 6.6718 2.6672 21 6 7.5811 6.9653 3.9614 22 1 6.9550 6.2879 4.5229 23 6 8.0442 8.1332 4.5517 24 7 8.8076 8.9587 3.8675 25 14 7.5836 8.5334 6.3174 26 1 8.5999 7.9602 7.2360 27 1 7.5321 10.0070 6.4936 28 1 6.2529 7.9510 6.6259 29 6 3.4346 1.3020 -0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2244 2.3533 -0.0002 34 1 1.3928 4.5192 -0.0011 35 1 5.5334 4.6937 -0.0019 36 1 7.7725 2.9674 -1.8729 37 1 9.1480 4.0111 -1.4395 38 1 7.8279 5.0009 -3.2904 39 1 6.3728 4.9761 -2.2661 40 1 8.9515 6.4918 -1.6578 41 1 7.4357 7.2161 -2.2466 42 1 6.2605 6.4052 -0.2197 43 1 7.6356 7.4487 0.2136 44 1 6.3409 5.4421 2.0379 45 1 7.7884 4.5793 2.6110 46 1 8.4818 7.2801 2.1630 47 1 9.1308 9.7749 4.2799 48 1 4.0435 0.4100 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268766742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:52 Heat of formation + Delta-G solvation = -38.538956 kcal Electronic energy + Delta-G solvation = -28914.963328 eV Core-core repulsion = 24969.982992 eV Total energy + Delta-G solvation = -3944.980336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13145 -40.07602 -38.69817 -37.77405 -34.59864 -33.64372 -31.94014 -31.89351 -31.69917 -29.76785 -29.31404 -28.06083 -25.31520 -24.45046 -23.67511 -22.93219 -22.14638 -21.18485 -20.48992 -19.03281 -18.84661 -17.61318 -17.16390 -16.51134 -16.33682 -15.96126 -15.72435 -15.38131 -14.89392 -14.82589 -14.61249 -14.24477 -14.14664 -14.05166 -13.61249 -13.39439 -13.20149 -12.99997 -12.88914 -12.61459 -12.08125 -12.00373 -11.91180 -11.75569 -11.60124 -11.34910 -10.85532 -10.83593 -10.66462 -10.35220 -10.23386 -10.15075 -9.92858 -9.79579 -9.76570 -9.58838 -9.54665 -9.27259 -8.86621 -8.77153 -6.86077 -5.72261 -2.99950 0.39035 0.97582 2.56363 2.68175 3.24671 3.46521 3.51675 3.53209 3.69101 4.00689 4.23302 4.46605 4.61462 4.62816 4.64641 4.78711 4.87431 4.95983 4.96800 4.98227 5.03287 5.29079 5.33163 5.40954 5.45943 5.62206 5.65674 5.67799 5.70045 5.74911 5.82891 5.90296 6.05515 6.12589 6.21262 6.22378 6.31427 6.34529 6.44979 6.57780 6.64360 6.74464 6.75674 6.87966 6.95993 7.43057 7.73315 7.75271 8.25295 8.47118 9.58316 10.16655 10.51749 11.50747 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.003101 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.544330 B = 9026.818390 C =10791.135771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.161 3.839 4 C -0.246 4.246 5 C 0.138 3.862 6 N -0.479 5.479 7 C 0.120 3.880 8 C 0.570 3.430 9 O -0.535 6.535 10 N -0.690 5.690 11 C 0.152 3.848 12 H 0.090 0.910 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.101 4.101 18 H 0.086 0.914 19 C 0.159 3.841 20 N -0.730 5.730 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.146 4.146 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -14.173 -14.654 25.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.267 4.267 5 C -0.021 4.021 6 N -0.193 5.193 7 C -0.018 4.018 8 C 0.354 3.646 9 O -0.412 6.412 10 N -0.341 5.341 11 C 0.047 3.953 12 H 0.108 0.892 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.157 4.157 16 C -0.149 4.149 17 C -0.120 4.120 18 H 0.105 0.895 19 C 0.031 3.969 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.167 4.167 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.586 -14.306 -14.473 25.038 hybrid contribution -1.175 0.173 0.925 1.506 sum -15.761 -14.133 -13.548 25.134 Atomic orbital electron populations 1.23176 0.77540 1.04575 1.01764 1.86096 1.22034 1.25999 1.87798 1.19200 0.92130 0.84833 0.93061 1.22415 1.01807 0.93216 1.09236 1.22619 0.89655 0.97257 0.92540 1.67645 1.07377 1.31186 1.13140 1.21045 0.94586 0.88586 0.97541 1.17749 0.85569 0.84140 0.77166 1.90779 1.63289 1.36627 1.50530 1.45968 1.08070 1.08126 1.71986 1.21063 0.79026 0.98838 0.96343 0.89223 1.21907 1.00736 0.98826 0.95177 1.21502 1.00708 0.94864 0.98358 1.21578 1.01100 0.96579 0.96489 1.21541 0.99796 0.99627 0.93956 1.21621 1.01505 0.92768 0.96109 0.89547 1.20657 0.96320 0.90318 0.89595 1.42358 1.60930 1.21498 1.12685 1.19225 1.25064 1.03254 0.89109 0.91347 1.24712 1.00586 0.97490 0.98260 1.69652 1.39283 1.13073 1.36338 0.86209 0.77935 0.77184 0.85001 1.21796 1.21822 1.20832 1.21394 0.91953 0.99812 1.03574 0.92219 0.87693 0.92153 0.83903 0.81627 0.74910 0.91723 0.90868 0.92505 0.92195 0.91931 0.92279 0.92444 0.90255 0.96190 0.96489 0.78215 0.93597 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.80 10.51 -18.95 -0.20 -3.00 16 3 C 0.16 1.64 6.73 -38.85 -0.26 1.38 16 4 C -0.25 -2.02 9.12 -39.19 -0.36 -2.38 16 5 C 0.14 1.30 11.17 -17.61 -0.20 1.10 16 6 N -0.48 -5.94 9.54 -9.87 -0.09 -6.04 16 7 C 0.12 1.61 6.75 -83.04 -0.56 1.05 16 8 C 0.57 8.63 7.78 -12.17 -0.09 8.54 16 9 O -0.54 -9.28 15.98 5.35 0.09 -9.19 16 10 N -0.69 -9.87 3.60 -54.64 -0.20 -10.06 16 11 C 0.15 2.19 2.23 -67.93 -0.15 2.04 16 12 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 13 C -0.13 -1.60 5.60 -26.73 -0.15 -1.75 16 14 C -0.12 -1.36 5.77 -26.73 -0.15 -1.51 16 15 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 16 C -0.11 -1.68 4.90 -26.73 -0.13 -1.81 16 17 C -0.10 -1.62 2.02 -90.62 -0.18 -1.80 16 18 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 19 C 0.16 3.25 5.42 -4.04 -0.02 3.23 16 20 N -0.73 -18.50 5.33 -59.91 -0.32 -18.82 16 21 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 25 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.15 -1.78 9.60 -38.89 -0.37 -2.16 16 30 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 33 H 0.14 0.71 6.45 -52.49 -0.34 0.37 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.41 5.81 6.00 -40.82 -0.24 5.57 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.72 7.60 -51.93 -0.39 0.32 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.85 6.51 -51.93 -0.34 0.51 16 43 H 0.08 1.40 7.18 -51.93 -0.37 1.03 16 44 H 0.02 0.42 7.61 -51.93 -0.40 0.03 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.09 6.85 -40.82 -0.28 9.81 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.16 1.91 7.64 -52.48 -0.40 1.50 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -33.45 385.38 -8.57 -42.02 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.31 Total: 11.17 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.05 Total: -1.97 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.11 Total: -62.55 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.11 Total: -12.19 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.45 -8.57 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268766742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.479 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds