Wall clock time and date at job start Tue Mar 31 2020 17:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35746 * 117.00436 * 2 1 4 4 C 1.39214 * 120.80989 * 359.97438 * 3 2 1 5 5 C 1.38318 * 119.28451 * 180.02562 * 4 3 2 6 6 N 1.31618 * 120.96833 * 359.72495 * 5 4 3 7 7 C 1.32791 * 121.78373 * 0.56572 * 6 5 4 8 8 C 1.48186 * 119.69917 * 179.70911 * 7 6 5 9 9 O 1.21517 * 120.00120 * 179.72735 * 8 7 6 10 10 N 1.34777 * 119.99690 * 359.72890 * 8 7 6 11 11 C 1.46507 * 119.99542 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46564 * 324.99950 * 11 10 8 13 13 C 1.52997 * 109.47235 * 84.99810 * 11 10 8 14 14 C 1.53006 * 109.47164 * 59.99744 * 13 11 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 14 13 11 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 13 17 17 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 18 18 H 1.08996 * 109.47134 * 59.99508 * 17 16 15 19 19 C 1.52995 * 109.47577 * 180.02562 * 17 16 15 20 20 N 1.46504 * 109.46737 * 294.99984 * 19 17 16 21 21 C 1.36938 * 119.99997 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00141 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99791 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00576 * 0.02562 * 23 21 20 25 25 Si 1.86811 * 119.99660 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47007 * 89.99968 * 25 23 21 27 27 H 1.48507 * 109.46672 * 209.99885 * 25 23 21 28 28 H 1.48499 * 109.46881 * 329.99913 * 25 23 21 29 29 C 1.39104 * 120.60231 * 359.43727 * 7 6 5 30 30 H 1.09004 * 109.47039 * 59.99530 * 1 2 3 31 31 H 1.09002 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46872 * 300.00437 * 1 2 3 33 33 H 1.07994 * 120.35998 * 0.04407 * 4 3 2 34 34 H 1.08000 * 119.51379 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00012 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46922 * 299.99993 * 13 11 10 37 37 H 1.09000 * 109.47140 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.46955 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.47050 * 300.00004 * 14 13 11 40 40 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 43 43 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.47220 * 54.99171 * 19 17 16 45 45 H 1.08991 * 109.47712 * 174.99863 * 19 17 16 46 46 H 0.97003 * 120.00242 * 359.97438 * 20 19 17 47 47 H 0.96994 * 120.00409 * 179.97438 * 24 23 21 48 48 H 1.08005 * 120.51038 * 180.29792 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9644 3.6029 -0.0011 6 7 3.2794 3.6589 0.0044 7 6 4.0263 2.5609 -0.0006 8 6 5.5035 2.6778 -0.0007 9 8 6.1922 1.6767 -0.0002 10 7 6.0831 3.8946 -0.0012 11 6 7.5436 4.0102 -0.0018 12 1 7.9724 3.1997 0.5877 13 6 8.0614 3.9246 -1.4390 14 6 7.4594 5.0621 -2.2665 15 6 7.8649 6.4058 -1.6573 16 6 7.3471 6.4913 -0.2202 17 6 7.9491 5.3538 0.6073 18 1 9.0357 5.4398 0.6068 19 6 7.4309 5.4389 2.0443 20 7 7.9191 6.6718 2.6672 21 6 7.5811 6.9653 3.9614 22 1 6.9550 6.2879 4.5229 23 6 8.0442 8.1332 4.5517 24 7 8.8076 8.9587 3.8675 25 14 7.5836 8.5334 6.3174 26 1 8.5999 7.9602 7.2360 27 1 7.5321 10.0070 6.4936 28 1 6.2529 7.9510 6.6259 29 6 3.4346 1.3020 -0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2244 2.3533 -0.0002 34 1 1.3928 4.5192 -0.0011 35 1 5.5334 4.6937 -0.0019 36 1 7.7725 2.9674 -1.8729 37 1 9.1480 4.0111 -1.4395 38 1 7.8279 5.0009 -3.2904 39 1 6.3728 4.9761 -2.2661 40 1 8.9515 6.4918 -1.6578 41 1 7.4357 7.2161 -2.2466 42 1 6.2605 6.4052 -0.2197 43 1 7.6356 7.4487 0.2136 44 1 6.3409 5.4421 2.0379 45 1 7.7884 4.5793 2.6110 46 1 8.4818 7.2801 2.1630 47 1 9.1308 9.7749 4.2799 48 1 4.0435 0.4100 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268766742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:51 Heat of formation + Delta-G solvation = -60.743412 kcal Electronic energy + Delta-G solvation = -28915.926185 eV Core-core repulsion = 24969.982992 eV Total energy + Delta-G solvation = -3945.943193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01555 -41.12436 -39.60811 -38.82902 -36.46126 -34.78423 -33.71598 -32.71846 -32.58437 -31.23812 -30.66321 -28.54069 -27.00816 -25.44993 -24.68631 -24.44551 -23.31921 -22.25340 -21.86084 -20.07842 -19.90560 -19.15098 -18.40930 -17.42966 -16.98558 -16.87422 -16.76184 -16.69667 -16.32310 -16.06662 -15.68062 -15.43321 -15.25148 -15.13143 -14.91917 -14.79130 -14.68562 -14.30716 -14.04320 -13.43808 -13.39987 -13.11611 -12.97188 -12.86818 -12.72440 -12.58260 -12.54617 -12.33038 -12.12533 -11.91766 -11.84691 -11.46447 -11.34350 -11.18686 -11.03148 -10.85556 -10.70104 -10.41325 -10.02098 -9.98188 -8.98502 -7.94709 -5.22966 -0.47749 0.19328 1.46431 1.48210 1.56648 1.65586 1.82481 2.31032 2.55690 2.78537 3.10104 3.38210 3.56358 3.59250 3.78841 3.79481 3.85063 3.96177 4.09379 4.13263 4.24316 4.32932 4.37743 4.42336 4.47843 4.48978 4.50476 4.58398 4.65672 4.69256 4.74913 4.75556 4.91292 4.92188 5.02125 5.09177 5.17026 5.27703 5.31742 5.33647 5.34581 5.45809 5.47636 5.52706 5.60446 6.12774 6.27564 6.39012 6.77680 7.10373 7.34521 8.09332 8.35259 9.28532 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.003101 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.544330 B = 9026.818390 C =10791.135771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.159 3.841 4 C -0.226 4.226 5 C 0.133 3.867 6 N -0.499 5.499 7 C 0.099 3.901 8 C 0.567 3.433 9 O -0.567 6.567 10 N -0.686 5.686 11 C 0.157 3.843 12 H 0.073 0.927 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.112 4.112 16 C -0.105 4.105 17 C -0.087 4.087 18 H 0.084 0.916 19 C 0.162 3.838 20 N -0.738 5.738 21 C -0.246 4.246 22 H 0.068 0.932 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.272 1.272 29 C -0.161 4.161 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.183 0.817 34 H 0.200 0.800 35 H 0.414 0.586 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.004 0.996 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.964 -14.270 -15.454 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.246 4.246 5 C -0.025 4.025 6 N -0.215 5.215 7 C -0.037 4.037 8 C 0.352 3.648 9 O -0.446 6.446 10 N -0.337 5.337 11 C 0.052 3.948 12 H 0.091 0.909 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.143 4.143 17 C -0.106 4.106 18 H 0.102 0.898 19 C 0.035 3.965 20 N -0.381 5.381 21 C -0.378 4.378 22 H 0.086 0.914 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.800 3.200 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.197 1.197 29 C -0.184 4.184 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.200 0.800 34 H 0.216 0.784 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.022 0.978 46 H 0.210 0.790 47 H 0.061 0.939 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.041 -14.429 -15.285 27.059 hybrid contribution -0.563 0.116 1.181 1.313 sum -17.603 -14.313 -14.104 26.714 Atomic orbital electron populations 1.23546 0.75080 1.06338 1.03177 1.86088 1.24565 1.25579 1.87504 1.19250 0.91511 0.86092 0.92661 1.22789 1.03591 0.91769 1.06476 1.23250 0.88771 0.99127 0.91392 1.67608 1.08965 1.30835 1.14059 1.20732 0.93573 0.89483 0.99960 1.18094 0.86616 0.83707 0.76364 1.90745 1.64303 1.37459 1.52068 1.45925 1.07883 1.08119 1.71749 1.20957 0.79350 0.96922 0.97560 0.90917 1.21860 1.01427 0.99205 0.93507 1.21455 1.00553 0.93563 0.99111 1.21524 1.01318 0.97665 0.94482 1.21450 0.99893 0.97427 0.95526 1.21456 1.01206 0.94377 0.93605 0.89789 1.20723 0.96002 0.87853 0.91915 1.42498 1.60849 1.22727 1.12073 1.19565 1.24620 1.03251 0.90358 0.91402 1.25509 1.01025 0.97556 1.02304 1.69799 1.40514 1.13400 1.37941 0.85178 0.77972 0.76692 0.80142 1.21539 1.21810 1.19684 1.21371 0.93371 0.98989 1.04629 0.90515 0.86014 0.90858 0.79983 0.78378 0.74710 0.92063 0.89724 0.90356 0.92408 0.91537 0.90897 0.92247 0.93051 0.96391 0.97788 0.79012 0.93919 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.42 10.51 -90.71 -0.95 -6.38 16 3 C 0.16 3.03 6.73 22.74 0.15 3.19 16 4 C -0.23 -3.05 9.12 22.52 0.21 -2.84 16 5 C 0.13 2.18 11.17 84.74 0.95 3.13 16 6 N -0.50 -12.05 9.54 -185.13 -1.77 -13.82 16 7 C 0.10 2.72 6.75 41.85 0.28 3.00 16 8 C 0.57 17.84 7.78 86.89 0.68 18.52 16 9 O -0.57 -20.64 15.98 -3.77 -0.06 -20.70 16 10 N -0.69 -20.05 3.60 -445.06 -1.60 -21.66 16 11 C 0.16 4.61 2.23 44.99 0.10 4.71 16 12 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 13 C -0.12 -2.95 5.60 30.60 0.17 -2.77 16 14 C -0.11 -2.34 5.77 30.60 0.18 -2.16 16 15 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 16 C -0.11 -3.17 4.90 30.59 0.15 -3.02 16 17 C -0.09 -2.86 2.02 -10.80 -0.02 -2.88 16 18 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 19 C 0.16 6.83 5.42 86.38 0.47 7.29 16 20 N -0.74 -38.36 5.33 -343.47 -1.83 -40.19 16 21 C -0.25 -14.16 9.99 84.03 0.84 -13.33 16 22 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 24 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 25 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 29 C -0.16 -4.05 9.60 22.72 0.22 -3.83 16 30 H 0.08 0.24 7.71 -2.38 -0.02 0.22 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.29 7.71 -2.39 -0.02 0.27 16 33 H 0.18 0.94 6.45 -2.91 -0.02 0.92 16 34 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.41 11.81 6.00 -92.71 -0.56 11.25 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.28 7.60 -2.39 -0.02 1.27 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.75 6.51 -2.39 -0.02 1.73 16 43 H 0.05 1.85 7.18 -2.39 -0.02 1.83 16 44 H 0.02 0.78 7.61 -2.39 -0.02 0.76 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.38 20.43 6.85 -92.71 -0.64 19.80 16 47 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.14 3.78 7.64 -2.91 -0.02 3.75 16 Total: -1.00 -73.94 385.38 2.02 -71.93 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.21 Total: 36.90 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 6.13 Total: 4.05 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -4.92 Total: -134.78 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.01 Total: -27.08 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -73.94 2.02 -71.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268766742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.183 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds