Wall clock time and date at job start Tue Mar 31 2020 17:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35746 * 117.00019 * 2 1 4 4 C 1.39294 * 120.83948 * 0.24655 * 3 2 1 5 5 C 1.37954 * 119.08369 * 180.29243 * 4 3 2 6 6 N 1.31976 * 120.83038 * 359.70564 * 5 4 3 7 7 C 1.31945 * 121.85950 * 0.02562 * 6 5 4 8 8 C 1.38001 * 120.82432 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.45039 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46913 * 264.99299 * 9 8 7 11 11 O 1.21277 * 120.00046 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99620 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99667 * 174.94816 * 12 10 9 14 14 C 1.53003 * 110.01758 * 65.02942 * 13 12 10 15 15 N 1.46503 * 109.47004 * 53.51412 * 14 13 12 16 16 C 1.36940 * 119.99775 * 185.01338 * 15 14 13 17 17 H 1.08001 * 119.99954 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99852 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99803 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47830 * 59.99771 * 20 18 16 22 22 H 1.48502 * 109.46912 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47202 * 299.99381 * 20 18 16 24 24 C 1.54271 * 110.07111 * 186.44176 * 13 12 10 25 25 C 1.54888 * 104.19586 * 95.69985 * 24 13 12 26 26 C 1.54890 * 102.74779 * 37.94060 * 25 24 13 27 27 C 1.53875 * 110.03781 * 303.63301 * 13 12 10 28 28 H 1.08995 * 109.47277 * 60.00740 * 1 2 3 29 29 H 1.09003 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47547 * 300.00123 * 1 2 3 31 31 H 1.07993 * 120.45989 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.58374 * 179.72395 * 5 4 3 33 33 H 1.07997 * 119.58709 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46552 * 144.99741 * 9 8 7 35 35 H 1.08998 * 109.47441 * 25.00197 * 9 8 7 36 36 H 0.96999 * 120.00248 * 354.95969 * 12 10 9 37 37 H 1.08992 * 109.47584 * 173.51910 * 14 13 12 38 38 H 1.08997 * 109.46656 * 293.52047 * 14 13 12 39 39 H 0.96998 * 120.00350 * 5.01795 * 15 14 13 40 40 H 0.96996 * 119.99589 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.48764 * 214.37697 * 24 13 12 42 42 H 1.08993 * 110.48881 * 337.02263 * 24 13 12 43 43 H 1.08996 * 110.75897 * 279.63012 * 25 24 13 44 44 H 1.08997 * 110.76089 * 156.25279 * 25 24 13 45 45 H 1.09000 * 110.48702 * 203.37679 * 26 25 24 46 46 H 1.09003 * 110.48533 * 80.73803 * 26 25 24 47 47 H 1.09005 * 110.02914 * 359.95178 * 27 13 12 48 48 H 1.08995 * 110.03124 * 121.37878 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3038 2.3887 0.0051 5 6 1.9674 3.5981 -0.0012 6 7 3.2863 3.6459 -0.0062 7 6 4.0229 2.5512 -0.0058 8 6 3.4344 1.3030 -0.0007 9 6 4.2839 0.0581 -0.0009 10 6 4.4593 -0.4300 -1.4159 11 8 3.9456 0.1738 -2.3337 12 7 5.1871 -1.5374 -1.6612 13 6 5.2666 -2.0751 -3.0217 14 6 5.9834 -1.0804 -3.9369 15 7 7.2780 -0.7233 -3.3513 16 6 8.0563 0.2351 -3.9436 17 1 7.7160 0.7275 -4.8426 18 6 9.2832 0.5730 -3.3891 19 7 9.6981 -0.0274 -2.2938 20 14 10.3446 1.8809 -4.1966 21 1 9.6023 3.1664 -4.2356 22 1 11.5951 2.0556 -3.4150 23 1 10.6801 1.4609 -5.5809 24 6 6.0173 -3.4228 -3.0153 25 6 4.8913 -4.4845 -2.9527 26 6 3.7946 -3.8735 -3.8599 27 6 3.8534 -2.3617 -3.5587 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2244 2.3567 0.0096 32 1 1.4005 4.5174 -0.0018 33 1 5.0998 2.6331 -0.0104 34 1 3.7954 -0.7150 0.5922 35 1 5.2596 0.2839 0.4293 36 1 5.6581 -1.9786 -0.9370 37 1 6.1400 -1.5344 -4.9153 38 1 5.3742 -0.1831 -4.0461 39 1 7.5838 -1.1659 -2.5442 40 1 10.5555 0.2085 -1.9066 41 1 6.6007 -3.5389 -3.9286 42 1 6.6607 -3.4970 -2.1386 43 1 4.5272 -4.6018 -1.9321 44 1 5.2365 -5.4379 -3.3527 45 1 2.8159 -4.2766 -3.5996 46 1 4.0190 -4.0624 -4.9097 47 1 3.1084 -2.1016 -2.8068 48 1 3.6782 -1.7921 -4.4713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269559156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:24 Heat of formation + Delta-G solvation = -30.608622 kcal Electronic energy + Delta-G solvation = -29905.542915 eV Core-core repulsion = 25960.906465 eV Total energy + Delta-G solvation = -3944.636450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81972 -39.81369 -38.23829 -37.43341 -34.24511 -33.23951 -32.96092 -31.21114 -30.93764 -28.71413 -28.48144 -27.78222 -27.06015 -24.41016 -22.92032 -22.72011 -22.11763 -20.71770 -20.22571 -18.80002 -18.39348 -17.17340 -17.00995 -16.74141 -16.01081 -15.86884 -15.27165 -15.04447 -14.90075 -14.43232 -14.41096 -14.24509 -13.99729 -13.71799 -13.33297 -13.14626 -13.02254 -12.96859 -12.51964 -12.39294 -12.04804 -11.83769 -11.72175 -11.41486 -11.22262 -11.06450 -10.91575 -10.85244 -10.75304 -10.63020 -10.38140 -10.35277 -9.99432 -9.61657 -9.48497 -9.35258 -9.08849 -8.76503 -8.63352 -8.41389 -6.78656 -5.68371 -2.93946 1.11516 1.38412 3.00372 3.21007 3.50664 3.54435 3.56249 3.58427 3.95909 4.44323 4.61125 4.65370 4.75633 4.77343 4.85088 4.89047 4.90459 5.00403 5.07954 5.19853 5.23688 5.37469 5.39885 5.59148 5.66266 5.68800 5.69834 5.72802 5.79432 5.83056 5.92810 5.95751 6.01011 6.06000 6.09057 6.23856 6.35832 6.47872 6.52990 6.58887 6.60013 6.69591 7.01012 7.09541 7.24084 7.79643 8.04369 8.07981 8.51703 8.80277 9.63141 10.21646 10.58073 11.54864 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004571 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.094506 B = 6123.529388 C = 8548.295416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.180 3.820 4 C -0.265 4.265 5 C 0.130 3.870 6 N -0.506 5.506 7 C 0.149 3.851 8 C -0.140 4.140 9 C -0.092 4.092 10 C 0.527 3.473 11 O -0.529 6.529 12 N -0.711 5.711 13 C 0.171 3.829 14 C 0.146 3.854 15 N -0.724 5.724 16 C -0.229 4.229 17 H 0.066 0.934 18 C -0.015 4.015 19 N -0.937 5.937 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.288 1.288 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.115 4.115 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.395 0.605 37 H 0.017 0.983 38 H 0.042 0.958 39 H 0.381 0.619 40 H 0.253 0.747 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.304 -5.586 7.743 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.127 3.873 4 C -0.286 4.286 5 C -0.027 4.027 6 N -0.218 5.218 7 C -0.006 4.006 8 C -0.143 4.143 9 C -0.133 4.133 10 C 0.312 3.688 11 O -0.405 6.405 12 N -0.362 5.362 13 C 0.085 3.915 14 C 0.017 3.983 15 N -0.368 5.368 16 C -0.360 4.360 17 H 0.084 0.916 18 C -0.210 4.210 19 N -0.587 5.587 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.154 4.154 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.229 0.771 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.215 0.785 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.159 -4.441 6.947 20.857 hybrid contribution 0.317 -0.240 0.137 0.421 sum -18.841 -4.682 7.084 20.666 Atomic orbital electron populations 1.23090 0.78158 1.04112 1.01438 1.86061 1.21521 1.26395 1.87706 1.19070 0.91789 0.84502 0.91963 1.22112 1.01148 0.93263 1.12123 1.22509 0.90457 0.96780 0.92986 1.67747 1.06954 1.32052 1.15017 1.22643 1.00524 0.86072 0.91380 1.19740 0.90647 0.96572 1.07316 1.20428 1.01039 0.95624 0.96199 1.20112 0.78312 0.79977 0.90374 1.90670 1.48593 1.55389 1.45843 1.45959 1.51377 1.28754 1.10107 1.21179 0.94575 0.93423 0.82293 1.21148 0.87933 0.95829 0.93354 1.42173 1.16605 1.46488 1.31534 1.19193 0.98003 1.12424 1.06388 0.91556 1.24643 0.98059 1.00363 0.97971 1.69632 1.21586 1.45495 1.21981 0.86306 0.79893 0.81889 0.78392 1.21372 1.21775 1.21447 1.22602 0.97123 0.92468 1.03494 1.22518 0.95990 0.98076 0.99579 1.22385 0.98436 0.95658 0.99725 1.22391 0.96216 0.95232 1.01595 0.92419 0.88087 0.92582 0.84697 0.82837 0.81926 0.88139 0.87578 0.77074 0.96506 0.93979 0.78518 0.93725 0.89796 0.90985 0.91822 0.91757 0.92200 0.91695 0.91491 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.31 -3.76 9.77 -18.95 -0.19 -3.94 16 3 C 0.18 2.46 6.70 -38.82 -0.26 2.20 16 4 C -0.27 -3.13 9.11 -39.29 -0.36 -3.49 16 5 C 0.13 1.64 11.17 -17.59 -0.20 1.44 16 6 N -0.51 -7.85 10.36 -13.33 -0.14 -7.99 16 7 C 0.15 2.33 10.84 -17.59 -0.19 2.14 16 8 C -0.14 -2.07 4.40 -104.34 -0.46 -2.53 16 9 C -0.09 -1.27 5.61 -29.03 -0.16 -1.44 16 10 C 0.53 9.06 6.87 -10.99 -0.08 8.98 16 11 O -0.53 -11.06 13.33 5.56 0.07 -10.99 16 12 N -0.71 -11.29 4.56 -46.57 -0.21 -11.50 16 13 C 0.17 2.87 0.57 -130.70 -0.07 2.79 16 14 C 0.15 3.17 4.63 -4.04 -0.02 3.15 16 15 N -0.72 -18.51 5.27 -59.91 -0.32 -18.82 16 16 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.94 -28.16 13.06 55.49 0.72 -27.44 16 20 Si 0.90 23.12 29.55 -169.99 -5.02 18.09 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C -0.12 -1.75 5.69 -25.07 -0.14 -1.89 16 25 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 26 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 27 C -0.12 -1.75 5.22 -25.62 -0.13 -1.89 16 28 H 0.06 0.43 7.72 -51.93 -0.40 0.03 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 31 H 0.14 1.16 6.47 -52.49 -0.34 0.82 16 32 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.10 1.16 7.78 -51.93 -0.40 0.75 16 35 H 0.11 1.34 8.06 -51.93 -0.42 0.92 16 36 H 0.40 5.39 8.23 -40.82 -0.34 5.06 16 37 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 38 H 0.04 1.04 6.60 -51.93 -0.34 0.69 16 39 H 0.38 9.90 7.20 -40.82 -0.29 9.60 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 42 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.06 7.00 -51.93 -0.36 0.70 16 48 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -35.51 387.95 -8.32 -43.83 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.42 Total: 12.83 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.67 Total: 0.09 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.06 Total: -65.75 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.11 Total: -14.93 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.51 -8.32 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269559156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.218 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds