Wall clock time and date at job start Tue Mar 31 2020 17:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35746 * 117.00019 * 2 1 4 4 C 1.39294 * 120.83948 * 0.24655 * 3 2 1 5 5 C 1.37954 * 119.08369 * 180.29243 * 4 3 2 6 6 N 1.31976 * 120.83038 * 359.70564 * 5 4 3 7 7 C 1.31945 * 121.85950 * 0.02562 * 6 5 4 8 8 C 1.38001 * 120.82432 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.45039 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46913 * 264.99299 * 9 8 7 11 11 O 1.21277 * 120.00046 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99620 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99667 * 174.94816 * 12 10 9 14 14 C 1.53003 * 110.01758 * 65.02942 * 13 12 10 15 15 N 1.46503 * 109.47004 * 53.51412 * 14 13 12 16 16 C 1.36940 * 119.99775 * 185.01338 * 15 14 13 17 17 H 1.08001 * 119.99954 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99852 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99803 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47830 * 59.99771 * 20 18 16 22 22 H 1.48502 * 109.46912 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47202 * 299.99381 * 20 18 16 24 24 C 1.54271 * 110.07111 * 186.44176 * 13 12 10 25 25 C 1.54888 * 104.19586 * 95.69985 * 24 13 12 26 26 C 1.54890 * 102.74779 * 37.94060 * 25 24 13 27 27 C 1.53875 * 110.03781 * 303.63301 * 13 12 10 28 28 H 1.08995 * 109.47277 * 60.00740 * 1 2 3 29 29 H 1.09003 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47547 * 300.00123 * 1 2 3 31 31 H 1.07993 * 120.45989 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.58374 * 179.72395 * 5 4 3 33 33 H 1.07997 * 119.58709 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46552 * 144.99741 * 9 8 7 35 35 H 1.08998 * 109.47441 * 25.00197 * 9 8 7 36 36 H 0.96999 * 120.00248 * 354.95969 * 12 10 9 37 37 H 1.08992 * 109.47584 * 173.51910 * 14 13 12 38 38 H 1.08997 * 109.46656 * 293.52047 * 14 13 12 39 39 H 0.96998 * 120.00350 * 5.01795 * 15 14 13 40 40 H 0.96996 * 119.99589 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.48764 * 214.37697 * 24 13 12 42 42 H 1.08993 * 110.48881 * 337.02263 * 24 13 12 43 43 H 1.08996 * 110.75897 * 279.63012 * 25 24 13 44 44 H 1.08997 * 110.76089 * 156.25279 * 25 24 13 45 45 H 1.09000 * 110.48702 * 203.37679 * 26 25 24 46 46 H 1.09003 * 110.48533 * 80.73803 * 26 25 24 47 47 H 1.09005 * 110.02914 * 359.95178 * 27 13 12 48 48 H 1.08995 * 110.03124 * 121.37878 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3038 2.3887 0.0051 5 6 1.9674 3.5981 -0.0012 6 7 3.2863 3.6459 -0.0062 7 6 4.0229 2.5512 -0.0058 8 6 3.4344 1.3030 -0.0007 9 6 4.2839 0.0581 -0.0009 10 6 4.4593 -0.4300 -1.4159 11 8 3.9456 0.1738 -2.3337 12 7 5.1871 -1.5374 -1.6612 13 6 5.2666 -2.0751 -3.0217 14 6 5.9834 -1.0804 -3.9369 15 7 7.2780 -0.7233 -3.3513 16 6 8.0563 0.2351 -3.9436 17 1 7.7160 0.7275 -4.8426 18 6 9.2832 0.5730 -3.3891 19 7 9.6981 -0.0274 -2.2938 20 14 10.3446 1.8809 -4.1966 21 1 9.6023 3.1664 -4.2356 22 1 11.5951 2.0556 -3.4150 23 1 10.6801 1.4609 -5.5809 24 6 6.0173 -3.4228 -3.0153 25 6 4.8913 -4.4845 -2.9527 26 6 3.7946 -3.8735 -3.8599 27 6 3.8534 -2.3617 -3.5587 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2244 2.3567 0.0096 32 1 1.4005 4.5174 -0.0018 33 1 5.0998 2.6331 -0.0104 34 1 3.7954 -0.7150 0.5922 35 1 5.2596 0.2839 0.4293 36 1 5.6581 -1.9786 -0.9370 37 1 6.1400 -1.5344 -4.9153 38 1 5.3742 -0.1831 -4.0461 39 1 7.5838 -1.1659 -2.5442 40 1 10.5555 0.2085 -1.9066 41 1 6.6007 -3.5389 -3.9286 42 1 6.6607 -3.4970 -2.1386 43 1 4.5272 -4.6018 -1.9321 44 1 5.2365 -5.4379 -3.3527 45 1 2.8159 -4.2766 -3.5996 46 1 4.0190 -4.0624 -4.9097 47 1 3.1084 -2.1016 -2.8068 48 1 3.6782 -1.7921 -4.4713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269559156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:23 Heat of formation + Delta-G solvation = -55.521848 kcal Electronic energy + Delta-G solvation = -29906.623234 eV Core-core repulsion = 25960.906465 eV Total energy + Delta-G solvation = -3945.716769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86975 -41.09651 -39.17024 -38.74231 -36.16148 -34.50616 -34.23181 -32.93658 -32.19023 -30.05623 -29.68191 -28.67218 -28.21704 -26.24183 -24.07382 -23.89914 -23.71240 -21.88488 -21.38588 -20.25065 -19.30638 -19.11843 -18.16849 -17.97980 -17.36823 -16.73410 -16.58123 -16.22914 -16.18190 -15.92167 -15.57300 -15.50352 -15.17661 -15.01934 -14.96309 -14.46310 -14.43360 -14.15274 -14.03055 -13.68623 -13.26284 -13.14491 -12.90953 -12.80056 -12.56689 -12.45994 -12.25952 -12.19985 -12.09951 -11.97870 -11.88906 -11.70501 -11.70027 -11.39236 -11.02617 -10.65744 -10.51030 -10.09275 -9.83477 -9.71237 -8.94346 -7.94536 -5.20276 0.08205 0.35781 1.44079 1.46899 1.52745 1.86149 2.18559 2.34699 2.55712 2.87024 3.37934 3.47031 3.54263 3.65853 3.73330 3.83049 3.91692 3.94391 4.12251 4.19716 4.23931 4.35855 4.36698 4.43315 4.43506 4.54871 4.58957 4.63198 4.69785 4.71855 4.78394 4.83895 4.91451 4.94861 4.95137 5.06603 5.10545 5.12221 5.21153 5.27735 5.37414 5.46745 5.50996 5.58111 5.82785 6.22306 6.28340 6.75707 7.03181 7.35962 7.48544 8.09889 8.40293 9.27967 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004571 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.094506 B = 6123.529388 C = 8548.295416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.321 6.321 3 C 0.173 3.827 4 C -0.258 4.258 5 C 0.122 3.878 6 N -0.536 5.536 7 C 0.126 3.874 8 C -0.158 4.158 9 C -0.084 4.084 10 C 0.520 3.480 11 O -0.571 6.571 12 N -0.704 5.704 13 C 0.174 3.826 14 C 0.149 3.851 15 N -0.726 5.726 16 C -0.246 4.246 17 H 0.058 0.942 18 C -0.063 4.063 19 N -0.959 5.959 20 Si 0.964 3.036 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.279 1.279 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.407 0.593 37 H 0.013 0.987 38 H 0.009 0.991 39 H 0.379 0.621 40 H 0.252 0.748 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.035 -6.929 8.483 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C 0.119 3.881 4 C -0.279 4.279 5 C -0.034 4.034 6 N -0.248 5.248 7 C -0.029 4.029 8 C -0.161 4.161 9 C -0.124 4.124 10 C 0.308 3.692 11 O -0.450 6.450 12 N -0.356 5.356 13 C 0.088 3.912 14 C 0.021 3.979 15 N -0.369 5.369 16 C -0.378 4.378 17 H 0.076 0.924 18 C -0.256 4.256 19 N -0.610 5.610 20 Si 0.794 3.206 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.206 1.206 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.188 0.812 32 H 0.204 0.796 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.243 0.757 37 H 0.031 0.969 38 H 0.027 0.973 39 H 0.212 0.788 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.901 -5.820 7.695 23.020 hybrid contribution 0.752 0.208 -0.133 0.792 sum -20.149 -5.612 7.562 22.241 Atomic orbital electron populations 1.23436 0.75817 1.05964 1.02560 1.86038 1.23943 1.25780 1.87403 1.19234 0.91636 0.85705 0.91502 1.22475 1.02859 0.92204 1.10347 1.23108 0.89719 0.98631 0.91975 1.67713 1.08581 1.32268 1.16242 1.22607 1.00437 0.86939 0.92945 1.19833 0.91813 0.96333 1.08128 1.20411 1.01727 0.96104 0.94136 1.20737 0.77521 0.79612 0.91359 1.90647 1.50356 1.56614 1.47413 1.45937 1.50972 1.28575 1.10110 1.21108 0.95354 0.92956 0.81805 1.21169 0.86343 0.95835 0.94507 1.42201 1.17517 1.45845 1.31334 1.19451 0.98787 1.13170 1.06419 0.92438 1.25341 0.99139 1.02409 0.98716 1.69752 1.21784 1.46550 1.22896 0.85358 0.78163 0.79284 0.77833 1.21424 1.21352 1.20564 1.22559 0.97972 0.92203 1.02756 1.22479 0.94145 0.97598 1.00581 1.22373 0.99955 0.92902 1.00232 1.22294 0.94649 0.97563 1.00269 0.92121 0.86045 0.90514 0.81166 0.79617 0.83004 0.85534 0.86891 0.75662 0.96926 0.97288 0.78843 0.93918 0.91446 0.90801 0.90215 0.89700 0.89912 0.91286 0.92081 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.32 16 2 O -0.32 -7.33 9.77 -90.70 -0.89 -8.22 16 3 C 0.17 4.57 6.70 22.76 0.15 4.72 16 4 C -0.26 -5.64 9.11 22.46 0.20 -5.43 16 5 C 0.12 2.96 11.17 84.60 0.95 3.90 16 6 N -0.54 -16.95 10.36 -196.08 -2.03 -18.98 16 7 C 0.13 4.11 10.84 84.62 0.92 5.03 16 8 C -0.16 -4.75 4.40 -19.68 -0.09 -4.84 16 9 C -0.08 -2.31 5.61 29.10 0.16 -2.15 16 10 C 0.52 18.25 6.87 87.66 0.60 18.85 16 11 O -0.57 -24.86 13.33 -3.02 -0.04 -24.90 16 12 N -0.70 -22.44 4.56 -419.64 -1.91 -24.35 16 13 C 0.17 5.88 0.57 4.33 0.00 5.88 16 14 C 0.15 6.77 4.63 86.38 0.40 7.17 16 15 N -0.73 -38.26 5.27 -343.45 -1.81 -40.07 16 16 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 17 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 18 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 19 N -0.96 -58.18 13.06 21.65 0.28 -57.90 16 20 Si 0.96 48.04 29.55 68.60 2.03 50.06 16 21 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 C -0.12 -3.32 5.69 31.67 0.18 -3.14 16 25 C -0.11 -2.26 6.91 31.89 0.22 -2.04 16 26 C -0.12 -2.56 6.83 31.67 0.22 -2.34 16 27 C -0.11 -3.27 5.22 31.32 0.16 -3.11 16 28 H 0.06 0.75 7.72 -2.39 -0.02 0.73 16 29 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 0.68 7.70 -2.39 -0.02 0.66 16 31 H 0.17 2.35 6.47 -2.91 -0.02 2.33 16 32 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.15 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.13 2.77 7.78 -2.39 -0.02 2.75 16 35 H 0.11 2.92 8.06 -2.39 -0.02 2.90 16 36 H 0.41 10.87 8.23 -92.71 -0.76 10.10 16 37 H 0.01 0.59 8.00 -2.39 -0.02 0.57 16 38 H 0.01 0.47 6.60 -2.39 -0.02 0.46 16 39 H 0.38 20.11 7.20 -92.71 -0.67 19.44 16 40 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.07 2.14 7.76 -2.39 -0.02 2.12 16 42 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.06 1.91 7.00 -2.38 -0.02 1.89 16 48 H 0.05 1.65 7.67 -2.39 -0.02 1.63 16 Total: -1.00 -79.00 387.95 1.68 -77.32 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.45 Total: 40.21 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.50 Total: 6.83 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -5.47 Total: -141.30 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.93 Total: -33.12 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -79.00 1.68 -77.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269559156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.799 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds