Wall clock time and date at job start Tue Mar 31 2020 17:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35662 * 117.00092 * 2 1 4 4 C 1.39289 * 119.61948 * 180.02562 * 3 2 1 5 5 C 1.38321 * 119.30796 * 179.97438 * 4 3 2 6 6 C 1.38791 * 118.56261 * 359.97438 * 5 4 3 7 7 C 1.39132 * 119.18289 * 0.02562 * 6 5 4 8 8 C 1.48147 * 119.68755 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00105 * 338.23494 * 8 7 6 10 10 N 1.34774 * 120.00146 * 158.23271 * 8 7 6 11 11 C 1.46933 * 120.62609 * 359.90015 * 10 8 7 12 12 C 1.52767 * 109.00439 * 233.58129 * 11 10 8 13 13 C 1.53042 * 109.38311 * 305.58851 * 12 11 10 14 14 C 1.53040 * 109.53541 * 61.24200 * 13 12 11 15 15 H 1.08998 * 109.52732 * 58.60699 * 14 13 12 16 16 C 1.53006 * 109.49304 * 178.68115 * 14 13 12 17 17 C 1.53002 * 109.46728 * 184.83564 * 16 14 13 18 18 N 1.46504 * 109.46986 * 180.02562 * 17 16 14 19 19 C 1.36934 * 120.00116 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00190 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00144 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47157 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47347 * 119.99641 * 23 21 19 26 26 H 1.48502 * 109.47121 * 239.99773 * 23 21 19 27 27 C 1.46926 * 120.63407 * 180.17356 * 10 8 7 28 28 N 1.31908 * 119.61519 * 359.73129 * 3 2 1 29 29 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46470 * 299.99558 * 1 2 3 31 31 H 1.09001 * 109.47063 * 59.99870 * 1 2 3 32 32 H 1.07996 * 120.34399 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.72373 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.40697 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.58699 * 353.41312 * 11 10 8 36 36 H 1.09000 * 109.58790 * 113.84419 * 11 10 8 37 37 H 1.09003 * 109.56366 * 185.55465 * 12 11 10 38 38 H 1.08998 * 109.38611 * 65.51669 * 12 11 10 39 39 H 1.08997 * 109.46252 * 301.22166 * 13 12 11 40 40 H 1.08997 * 109.45542 * 181.25974 * 13 12 11 41 41 H 1.08995 * 109.47276 * 304.83663 * 16 14 13 42 42 H 1.09004 * 109.47123 * 64.83945 * 16 14 13 43 43 H 1.08995 * 109.47323 * 300.00070 * 17 16 14 44 44 H 1.09004 * 109.47007 * 60.00311 * 17 16 14 45 45 H 0.97003 * 120.00188 * 359.97438 * 18 17 16 46 46 H 0.97001 * 120.00574 * 180.02562 * 22 21 19 47 47 H 1.08990 * 109.58968 * 246.15652 * 27 10 8 48 48 H 1.09001 * 109.58153 * 6.58483 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2724 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2666 3.6486 -0.0016 7 6 1.8819 3.5137 -0.0010 8 6 1.0268 4.7235 -0.0010 9 8 1.4743 5.7839 0.3888 10 7 -0.2475 4.6481 -0.4333 11 6 -0.8021 3.3735 -0.9097 12 6 -1.3892 3.5771 -2.3053 13 6 -2.3977 4.7276 -2.2692 14 6 -1.6885 6.0169 -1.8489 15 1 -0.8838 6.2355 -2.5509 16 6 -2.6907 7.1730 -1.8450 17 6 -1.9582 8.4818 -1.5426 18 7 -2.9179 9.5888 -1.5382 19 6 -2.4896 10.8654 -1.2893 20 1 -1.4442 11.0563 -1.0967 21 6 -3.3990 11.9141 -1.2846 22 7 -4.6729 11.6816 -1.5199 23 14 -2.8148 13.6555 -0.9444 24 1 -1.3481 13.6490 -0.7119 25 1 -3.1276 14.5194 -2.1111 26 1 -3.5042 14.1823 0.2607 27 6 -1.1066 5.8399 -0.4429 28 7 1.3192 2.3102 -0.0054 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 4.0240 0.3663 -0.0014 33 1 5.1350 2.5842 -0.0019 34 1 3.7204 4.6286 -0.0016 35 1 -0.0115 2.6244 -0.9530 36 1 -1.5873 3.0403 -0.2310 37 1 -1.8901 2.6641 -2.6272 38 1 -0.5875 3.8178 -3.0034 39 1 -3.1864 4.4969 -1.5530 40 1 -2.8339 4.8593 -3.2594 41 1 -3.1697 7.2420 -2.8216 42 1 -3.4475 6.9953 -1.0808 43 1 -1.4792 8.4129 -0.5659 44 1 -1.2015 8.6596 -2.3067 45 1 -3.8567 9.4175 -1.7123 46 1 -5.3084 12.4144 -1.5170 47 1 -1.9171 5.7119 0.2745 48 1 -0.5168 6.7175 -0.1783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269785426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:53 Heat of formation + Delta-G solvation = -14.336285 kcal Electronic energy + Delta-G solvation = -28763.934797 eV Core-core repulsion = 24820.003968 eV Total energy + Delta-G solvation = -3943.930829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47258 -39.97950 -38.39931 -37.58008 -35.36181 -33.79829 -32.80249 -32.15142 -31.30188 -30.53660 -27.93646 -27.50896 -26.11935 -24.26752 -24.00331 -23.33613 -22.50818 -21.08112 -20.57004 -19.71654 -18.39011 -17.86914 -16.94887 -16.74107 -16.47713 -16.24487 -16.13143 -15.40517 -14.88230 -14.78813 -14.55375 -14.47017 -13.85129 -13.79644 -13.71822 -13.51639 -13.38218 -13.03517 -12.94723 -12.76707 -12.60753 -12.26099 -12.10289 -11.64574 -11.36219 -11.16962 -11.10345 -11.01699 -10.82273 -10.61990 -10.56680 -10.40751 -10.33703 -10.17673 -9.87327 -9.62375 -9.35744 -9.03029 -8.80153 -8.65109 -6.84518 -5.70341 -2.98301 0.26586 0.76960 2.46703 2.58120 2.77460 3.35972 3.48182 3.53853 3.56491 3.65179 4.27710 4.47093 4.54135 4.61569 4.71445 4.78918 4.83231 4.85693 4.86951 4.92062 4.97609 5.04444 5.20976 5.25379 5.42887 5.48608 5.59510 5.62586 5.66197 5.69810 5.75484 5.78867 5.83538 5.89696 6.00903 6.02471 6.10374 6.25870 6.31923 6.37745 6.48022 6.54092 6.73659 6.94183 6.97448 7.11748 7.30592 7.78067 7.98339 8.49143 9.60038 10.18927 10.53651 11.52929 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.002342 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.812650 B =11955.153729 C =13036.542708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C 0.314 3.686 4 C -0.169 4.169 5 C -0.044 4.044 6 C -0.147 4.147 7 C 0.126 3.874 8 C 0.566 3.434 9 O -0.525 6.525 10 N -0.587 5.587 11 C 0.073 3.927 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.095 4.095 15 H 0.073 0.927 16 C -0.118 4.118 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.111 3.889 28 N -0.508 5.508 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.071 0.929 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 -29.784 0.998 32.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.134 3.866 4 C -0.190 4.190 5 C -0.069 4.069 6 C -0.169 4.169 7 C -0.010 4.010 8 C 0.352 3.648 9 O -0.401 6.401 10 N -0.318 5.318 11 C -0.050 4.050 12 C -0.175 4.175 13 C -0.154 4.154 14 C -0.114 4.114 15 H 0.092 0.908 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.585 5.585 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.010 4.010 28 N -0.236 5.236 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.278 -29.385 1.258 32.270 hybrid contribution 0.346 1.047 0.057 1.104 sum 13.623 -28.338 1.315 31.470 Atomic orbital electron populations 1.23029 0.76863 1.03501 1.02742 1.86265 1.23164 1.23970 1.87772 1.19973 0.89600 0.84631 0.92422 1.21295 0.91936 0.99950 1.05774 1.21487 1.01065 0.90729 0.93623 1.22009 0.92825 1.01063 1.00958 1.20873 0.92381 0.90116 0.97632 1.17883 0.81514 0.86823 0.78628 1.90840 1.72889 1.28792 1.47596 1.47983 1.10853 1.11235 1.61700 1.22813 1.01219 0.86600 0.94349 1.21902 0.99220 0.99075 0.97276 1.21609 0.97717 0.94126 1.01900 1.21452 0.98503 0.95088 0.96402 0.90825 1.21733 0.97697 0.93975 1.02248 1.20717 0.92643 0.86652 0.97688 1.42386 1.06793 1.02819 1.85832 1.19312 0.93466 0.84292 1.39557 0.91126 1.24741 0.95476 0.98040 1.03013 1.69671 1.01134 1.30864 1.56813 0.86112 0.77743 0.84977 0.77398 1.20516 1.21915 1.21891 1.21925 0.93916 0.87905 0.97251 1.67276 1.38988 0.98414 1.18921 0.88266 0.91941 0.91958 0.83530 0.83130 0.83038 0.84681 0.91783 0.91036 0.91944 0.91713 0.91565 0.91525 0.91760 0.96136 0.96515 0.78373 0.93654 0.91048 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.31 101.05 1.04 1.23 16 2 O -0.31 -2.40 10.48 -18.69 -0.20 -2.60 16 3 C 0.31 2.72 7.49 -17.13 -0.13 2.59 16 4 C -0.17 -1.14 10.05 -39.16 -0.39 -1.53 16 5 C -0.04 -0.28 10.16 -39.35 -0.40 -0.68 16 6 C -0.15 -1.35 9.62 -39.05 -0.38 -1.73 16 7 C 0.13 1.42 6.45 -83.02 -0.54 0.89 16 8 C 0.57 7.99 7.61 -12.19 -0.09 7.90 16 9 O -0.53 -9.12 15.93 5.35 0.09 -9.03 16 10 N -0.59 -7.58 2.98 -174.03 -0.52 -8.10 16 11 C 0.07 0.73 5.96 -3.93 -0.02 0.70 16 12 C -0.14 -1.27 6.06 -26.83 -0.16 -1.44 16 13 C -0.12 -1.26 5.17 -26.69 -0.14 -1.40 16 14 C -0.09 -1.28 2.34 -90.50 -0.21 -1.49 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.12 -1.94 4.80 -26.73 -0.13 -2.07 16 17 C 0.15 3.19 6.02 -4.04 -0.02 3.17 16 18 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 19 C -0.23 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 22 N -0.94 -29.15 13.06 55.49 0.72 -28.42 16 23 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 C 0.11 1.58 5.33 -3.71 -0.02 1.56 16 28 N -0.51 -5.06 5.28 -9.87 -0.05 -5.11 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 8.11 -51.93 -0.42 -0.05 16 31 H 0.06 0.33 7.23 -51.93 -0.38 -0.04 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.15 1.36 7.79 -52.49 -0.41 0.95 16 35 H 0.14 1.30 2.99 -79.30 -0.24 1.06 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 10.57 7.67 -40.82 -0.31 10.25 16 46 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.10 1.68 5.72 -51.93 -0.30 1.39 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -34.81 385.08 -8.79 -43.60 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.44 Total: 5.50 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.84 Total: 0.05 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.18 Total: -61.50 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.11 Total: -11.63 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.81 -8.79 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269785426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.267 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds