Wall clock time and date at job start Tue Mar 31 2020 17:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35662 * 117.00092 * 2 1 4 4 C 1.39289 * 119.61948 * 180.02562 * 3 2 1 5 5 C 1.38321 * 119.30796 * 179.97438 * 4 3 2 6 6 C 1.38791 * 118.56261 * 359.97438 * 5 4 3 7 7 C 1.39132 * 119.18289 * 0.02562 * 6 5 4 8 8 C 1.48147 * 119.68755 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00105 * 338.23494 * 8 7 6 10 10 N 1.34774 * 120.00146 * 158.23271 * 8 7 6 11 11 C 1.46933 * 120.62609 * 359.90015 * 10 8 7 12 12 C 1.52767 * 109.00439 * 233.58129 * 11 10 8 13 13 C 1.53042 * 109.38311 * 305.58851 * 12 11 10 14 14 C 1.53040 * 109.53541 * 61.24200 * 13 12 11 15 15 H 1.08998 * 109.52732 * 58.60699 * 14 13 12 16 16 C 1.53006 * 109.49304 * 178.68115 * 14 13 12 17 17 C 1.53002 * 109.46728 * 184.83564 * 16 14 13 18 18 N 1.46504 * 109.46986 * 180.02562 * 17 16 14 19 19 C 1.36934 * 120.00116 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00190 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00144 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47157 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47347 * 119.99641 * 23 21 19 26 26 H 1.48502 * 109.47121 * 239.99773 * 23 21 19 27 27 C 1.46926 * 120.63407 * 180.17356 * 10 8 7 28 28 N 1.31908 * 119.61519 * 359.73129 * 3 2 1 29 29 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46470 * 299.99558 * 1 2 3 31 31 H 1.09001 * 109.47063 * 59.99870 * 1 2 3 32 32 H 1.07996 * 120.34399 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.72373 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.40697 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.58699 * 353.41312 * 11 10 8 36 36 H 1.09000 * 109.58790 * 113.84419 * 11 10 8 37 37 H 1.09003 * 109.56366 * 185.55465 * 12 11 10 38 38 H 1.08998 * 109.38611 * 65.51669 * 12 11 10 39 39 H 1.08997 * 109.46252 * 301.22166 * 13 12 11 40 40 H 1.08997 * 109.45542 * 181.25974 * 13 12 11 41 41 H 1.08995 * 109.47276 * 304.83663 * 16 14 13 42 42 H 1.09004 * 109.47123 * 64.83945 * 16 14 13 43 43 H 1.08995 * 109.47323 * 300.00070 * 17 16 14 44 44 H 1.09004 * 109.47007 * 60.00311 * 17 16 14 45 45 H 0.97003 * 120.00188 * 359.97438 * 18 17 16 46 46 H 0.97001 * 120.00574 * 180.02562 * 22 21 19 47 47 H 1.08990 * 109.58968 * 246.15652 * 27 10 8 48 48 H 1.09001 * 109.58153 * 6.58483 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2724 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2666 3.6486 -0.0016 7 6 1.8819 3.5137 -0.0010 8 6 1.0268 4.7235 -0.0010 9 8 1.4743 5.7839 0.3888 10 7 -0.2475 4.6481 -0.4333 11 6 -0.8021 3.3735 -0.9097 12 6 -1.3892 3.5771 -2.3053 13 6 -2.3977 4.7276 -2.2692 14 6 -1.6885 6.0169 -1.8489 15 1 -0.8838 6.2355 -2.5509 16 6 -2.6907 7.1730 -1.8450 17 6 -1.9582 8.4818 -1.5426 18 7 -2.9179 9.5888 -1.5382 19 6 -2.4896 10.8654 -1.2893 20 1 -1.4442 11.0563 -1.0967 21 6 -3.3990 11.9141 -1.2846 22 7 -4.6729 11.6816 -1.5199 23 14 -2.8148 13.6555 -0.9444 24 1 -1.3481 13.6490 -0.7119 25 1 -3.1276 14.5194 -2.1111 26 1 -3.5042 14.1823 0.2607 27 6 -1.1066 5.8399 -0.4429 28 7 1.3192 2.3102 -0.0054 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 4.0240 0.3663 -0.0014 33 1 5.1350 2.5842 -0.0019 34 1 3.7204 4.6286 -0.0016 35 1 -0.0115 2.6244 -0.9530 36 1 -1.5873 3.0403 -0.2310 37 1 -1.8901 2.6641 -2.6272 38 1 -0.5875 3.8178 -3.0034 39 1 -3.1864 4.4969 -1.5530 40 1 -2.8339 4.8593 -3.2594 41 1 -3.1697 7.2420 -2.8216 42 1 -3.4475 6.9953 -1.0808 43 1 -1.4792 8.4129 -0.5659 44 1 -1.2015 8.6596 -2.3067 45 1 -3.8567 9.4175 -1.7123 46 1 -5.3084 12.4144 -1.5170 47 1 -1.9171 5.7119 0.2745 48 1 -0.5168 6.7175 -0.1783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269785426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:52 Heat of formation + Delta-G solvation = -37.689128 kcal Electronic energy + Delta-G solvation = -28764.947453 eV Core-core repulsion = 24820.003968 eV Total energy + Delta-G solvation = -3944.943484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.22172 -40.87426 -39.22590 -38.49872 -37.01281 -35.18443 -33.79341 -33.30576 -32.36001 -31.86985 -29.08029 -28.46835 -27.02747 -25.91440 -24.87110 -24.11830 -23.86928 -22.27010 -21.79709 -20.69780 -19.20569 -19.05332 -18.66876 -17.42357 -17.18487 -17.06490 -16.95444 -16.69576 -16.37835 -15.91496 -15.55164 -15.39630 -15.28410 -15.10256 -14.81841 -14.52539 -14.45421 -14.27003 -14.16775 -13.86735 -13.37509 -13.25213 -13.00856 -12.86236 -12.67821 -12.61114 -12.36742 -12.15836 -12.10745 -12.04932 -11.94078 -11.80082 -11.66002 -11.56261 -11.23760 -11.00650 -10.95572 -10.15225 -9.81765 -9.55706 -9.04121 -7.99085 -5.28422 -0.44167 0.17189 1.44312 1.45640 1.55992 1.56305 1.78698 2.06358 2.53066 2.64027 2.88818 3.33927 3.51902 3.66460 3.80140 3.87323 3.89069 3.98354 4.10884 4.12448 4.22192 4.29267 4.37396 4.43588 4.46495 4.47471 4.48443 4.62819 4.66974 4.72117 4.82183 4.83800 4.87576 4.90544 5.03256 5.06092 5.06219 5.11342 5.22030 5.29358 5.31730 5.36629 5.44468 5.47363 5.53976 6.09917 6.24053 6.26546 6.50402 6.95529 7.29766 8.04649 8.29859 9.24659 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.002342 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.812650 B =11955.153729 C =13036.542708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.302 3.698 4 C -0.157 4.157 5 C -0.032 4.032 6 C -0.153 4.153 7 C 0.100 3.900 8 C 0.558 3.442 9 O -0.573 6.573 10 N -0.586 5.586 11 C 0.070 3.930 12 C -0.129 4.129 13 C -0.111 4.111 14 C -0.083 4.083 15 H 0.063 0.937 16 C -0.103 4.103 17 C 0.150 3.850 18 N -0.746 5.746 19 C -0.250 4.250 20 H 0.070 0.930 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.113 3.887 28 N -0.515 5.515 29 H 0.124 0.876 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.177 0.823 33 H 0.189 0.811 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.075 0.925 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.868 -32.397 0.629 35.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.121 3.879 4 C -0.177 4.177 5 C -0.056 4.056 6 C -0.175 4.175 7 C -0.035 4.035 8 C 0.345 3.655 9 O -0.453 6.453 10 N -0.316 5.316 11 C -0.051 4.051 12 C -0.167 4.167 13 C -0.149 4.149 14 C -0.103 4.103 15 H 0.082 0.918 16 C -0.142 4.142 17 C 0.024 3.976 18 N -0.389 5.389 19 C -0.382 4.382 20 H 0.088 0.912 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.804 3.196 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.216 1.216 27 C -0.009 4.009 28 N -0.243 5.243 29 H 0.142 0.858 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.195 0.805 33 H 0.206 0.794 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.207 0.793 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.407 -32.049 0.876 35.149 hybrid contribution 0.050 1.740 0.191 1.751 sum 14.457 -30.309 1.067 33.598 Atomic orbital electron populations 1.23221 0.75842 1.05104 1.02506 1.86275 1.24266 1.23384 1.87685 1.20316 0.90563 0.84451 0.92585 1.21726 0.91362 1.01192 1.03407 1.21880 1.02610 0.89364 0.91776 1.22143 0.92341 1.02121 1.00888 1.20491 0.92650 0.89544 1.00794 1.18427 0.81908 0.87379 0.77752 1.90795 1.73884 1.30802 1.49818 1.48105 1.10564 1.11702 1.61245 1.23046 1.01774 0.85305 0.94970 1.21881 0.98682 0.99654 0.96515 1.21584 0.98014 0.92804 1.02474 1.21322 0.97603 0.95626 0.95760 0.91848 1.21588 0.97865 0.92454 1.02275 1.20844 0.92143 0.87603 0.97024 1.42586 1.07207 1.03380 1.85742 1.19655 0.93561 0.85759 1.39175 0.91243 1.25598 0.95666 1.02133 1.03326 1.69815 1.02159 1.31961 1.57933 0.85050 0.77730 0.79774 0.77076 1.19417 1.21505 1.21622 1.21742 0.93702 0.87699 0.97753 1.67069 1.39498 0.98267 1.19453 0.85823 0.92666 0.91681 0.80531 0.79351 0.83627 0.83842 0.90753 0.87953 0.92648 0.90824 0.90694 0.91242 0.91523 0.96786 0.97151 0.79257 0.93807 0.90643 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.31 113.37 1.17 1.42 16 2 O -0.31 -4.14 10.48 -89.78 -0.94 -5.08 16 3 C 0.30 4.61 7.49 84.93 0.64 5.25 16 4 C -0.16 -1.61 10.05 22.54 0.23 -1.39 16 5 C -0.03 -0.32 10.16 22.42 0.23 -0.09 16 6 C -0.15 -2.74 9.62 22.62 0.22 -2.52 16 7 C 0.10 2.27 6.45 41.84 0.27 2.54 16 8 C 0.56 16.56 7.61 86.88 0.66 17.22 16 9 O -0.57 -21.46 15.93 -3.77 -0.06 -21.52 16 10 N -0.59 -15.52 2.98 -822.79 -2.45 -17.97 16 11 C 0.07 1.32 5.96 86.22 0.51 1.84 16 12 C -0.13 -2.14 6.06 30.53 0.19 -1.95 16 13 C -0.11 -2.22 5.17 30.62 0.16 -2.06 16 14 C -0.08 -2.27 2.34 -10.71 -0.03 -2.30 16 15 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 16 C -0.10 -3.45 4.80 30.60 0.15 -3.30 16 17 C 0.15 6.61 6.02 86.38 0.52 7.13 16 18 N -0.75 -40.78 5.60 -343.44 -1.92 -42.71 16 19 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 21 C -0.07 -4.51 5.50 84.86 0.47 -4.05 16 22 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 23 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 C 0.11 3.36 5.33 86.36 0.46 3.82 16 28 N -0.51 -9.75 5.28 -298.20 -1.57 -11.32 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.58 8.11 -2.38 -0.02 0.56 16 31 H 0.06 0.55 7.23 -2.39 -0.02 0.53 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 33 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 34 H 0.15 2.70 7.79 -2.91 -0.02 2.68 16 35 H 0.15 2.57 2.99 -56.43 -0.17 2.41 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.01 0.65 6.70 -2.39 -0.02 0.63 16 44 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.38 21.28 7.67 -92.71 -0.71 20.57 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.07 2.46 5.72 -2.39 -0.01 2.44 16 Total: -1.00 -77.68 385.08 2.13 -75.55 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.10 Total: 26.26 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.67 Total: 7.44 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -5.67 Total: -132.86 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.00 Total: -26.61 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -77.68 2.13 -75.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269785426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.863 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds