Wall clock time and date at job start Tue Mar 31 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99987 * 2 1 4 4 O 1.21288 * 119.99558 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00399 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47101 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46976 * 180.02562 * 6 5 3 8 8 C 1.50699 * 109.46978 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99875 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99947 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46998 * 180.02562 * 11 10 8 13 13 C 1.38227 * 120.00136 * 90.00157 * 12 11 10 14 14 C 1.38244 * 120.00133 * 180.02562 * 13 12 11 15 15 C 1.38232 * 119.99611 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47064 * 89.99969 * 16 15 14 18 18 C 1.36936 * 119.99992 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00176 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46951 * 89.99797 * 22 20 18 24 24 H 1.48500 * 109.47313 * 210.00112 * 22 20 18 25 25 H 1.48501 * 109.46991 * 330.00153 * 22 20 18 26 26 C 1.38234 * 120.00312 * 0.25696 * 15 14 13 27 27 C 1.38239 * 119.99901 * 359.49432 * 26 15 14 28 28 H 1.08992 * 109.47545 * 300.00251 * 1 2 3 29 29 H 1.09001 * 109.47352 * 60.00558 * 1 2 3 30 30 H 1.09006 * 109.46762 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00521 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47044 * 59.99879 * 5 3 2 33 33 H 1.09001 * 109.46978 * 300.00094 * 5 3 2 34 34 H 1.09002 * 109.47346 * 60.00532 * 6 5 3 35 35 H 1.09001 * 109.47658 * 300.00139 * 6 5 3 36 36 H 1.08992 * 109.47272 * 60.00277 * 7 6 5 37 37 H 1.09001 * 109.46882 * 300.00420 * 7 6 5 38 38 H 0.97001 * 119.99724 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.47052 * 59.99964 * 11 10 8 40 40 H 1.09001 * 109.46973 * 300.00184 * 11 10 8 41 41 H 1.07996 * 120.00251 * 359.97438 * 13 12 11 42 42 H 1.07998 * 119.99981 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.47152 * 330.00052 * 16 15 14 44 44 H 1.09001 * 109.46980 * 210.00152 * 16 15 14 45 45 H 0.96996 * 119.99606 * 0.02562 * 17 16 15 46 46 H 0.97001 * 120.00803 * 179.97438 * 21 20 18 47 47 H 1.07998 * 120.00015 * 179.72855 * 26 15 14 48 48 H 1.08001 * 119.99843 * 180.23314 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1674 0.0006 6 6 4.1557 2.6099 -0.0002 7 6 5.6858 2.6099 -0.0002 8 6 6.1880 4.0308 -0.0004 9 8 5.3998 4.9526 -0.0009 10 7 7.5131 4.2771 -0.0009 11 6 8.0014 5.6584 -0.0016 12 6 9.5084 5.6584 -0.0028 13 6 10.1986 5.6582 -1.2004 14 6 11.5810 5.6577 -1.2015 15 6 12.2730 5.6580 -0.0049 16 6 13.7801 5.6569 -0.0061 17 7 14.2694 7.0378 -0.0073 18 6 15.6159 7.2870 -0.0080 19 1 16.3171 6.4656 -0.0080 20 6 16.0795 8.5953 -0.0086 21 7 15.2250 9.5964 -0.0081 22 14 17.9164 8.9354 -0.0102 23 1 18.4019 9.0252 -1.4107 24 1 18.1830 10.2179 0.6894 25 1 18.6244 7.8334 0.6894 26 6 11.5828 5.6534 1.1927 27 6 10.2004 5.6590 1.1938 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0089 0.6537 0.8908 34 1 3.7921 3.1243 0.8894 35 1 3.7927 3.1232 -0.8906 36 1 6.0491 2.0957 -0.8899 37 1 6.0491 2.0965 0.8900 38 1 8.1435 3.5399 -0.0017 39 1 7.6383 6.1725 0.8883 40 1 7.6376 6.1718 -0.8917 41 1 9.6579 5.6576 -2.1353 42 1 12.1203 5.6572 -2.1373 43 1 14.1424 5.1422 -0.8960 44 1 14.1437 5.1433 0.8840 45 1 13.6396 7.7755 -0.0069 46 1 15.5489 10.5107 -0.0082 47 1 12.1235 5.6491 2.1276 48 1 9.6612 5.6592 2.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270059708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:33 Heat of formation + Delta-G solvation = -55.188306 kcal Electronic energy + Delta-G solvation = -26161.853977 eV Core-core repulsion = 22216.151672 eV Total energy + Delta-G solvation = -3945.702306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.26994 -39.87618 -39.07419 -35.64011 -35.12963 -34.57532 -34.30627 -32.12844 -30.72992 -30.44248 -29.51507 -27.35344 -26.36881 -24.39075 -22.79708 -22.50034 -22.21608 -20.80089 -20.59225 -20.35716 -18.03625 -17.30571 -17.07968 -16.61147 -16.39242 -16.11855 -15.80811 -15.39228 -15.24976 -14.78748 -14.56436 -14.37618 -14.23733 -13.69747 -13.43266 -13.40108 -13.22368 -13.16531 -12.85305 -12.80328 -12.52873 -12.27430 -12.22878 -12.00659 -11.85319 -11.83380 -11.15529 -11.08915 -10.87418 -10.74664 -10.60655 -10.36129 -10.07988 -10.04988 -9.78933 -9.63391 -9.24133 -8.92209 -8.70240 -8.44560 -6.96359 -5.78234 -3.08431 1.39077 1.62709 2.21769 2.47426 2.69623 3.12702 3.42387 3.47248 3.49318 3.99205 4.20718 4.40948 4.56223 4.59951 4.61035 4.66976 4.74375 4.91426 4.96919 5.01971 5.03702 5.14563 5.17979 5.21949 5.31896 5.33375 5.36344 5.55296 5.63589 5.73329 5.75000 5.84723 5.85835 6.03960 6.13405 6.15525 6.18696 6.23997 6.46913 6.56093 6.61969 6.69030 6.95821 7.08475 7.20500 7.32645 7.66842 7.77586 8.05369 8.39320 9.50953 10.06813 10.42515 11.44183 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.050647 B = 0.001342 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.717833 B =20864.725061 C =21086.444206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.508 3.492 4 O -0.533 6.533 5 C -0.141 4.141 6 C -0.090 4.090 7 C -0.141 4.141 8 C 0.509 3.491 9 O -0.538 6.538 10 N -0.726 5.726 11 C 0.165 3.835 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.106 4.106 15 C -0.064 4.064 16 C 0.184 3.816 17 N -0.727 5.727 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.106 4.106 27 C -0.104 4.104 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.402 0.598 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.386 0.614 46 H 0.256 0.744 47 H 0.124 0.876 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.095 -24.208 0.045 34.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.295 3.705 4 O -0.408 6.408 5 C -0.181 4.181 6 C -0.129 4.129 7 C -0.181 4.181 8 C 0.295 3.705 9 O -0.415 6.415 10 N -0.378 5.378 11 C 0.042 3.958 12 C -0.125 4.125 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.065 4.065 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.220 0.780 46 H 0.066 0.934 47 H 0.142 0.858 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.946 -22.763 0.053 34.516 hybrid contribution 1.433 -0.262 -0.012 1.457 sum -24.513 -23.024 0.042 33.630 Atomic orbital electron populations 1.21535 0.79692 1.02165 1.02437 1.45866 1.07852 1.08844 1.76772 1.20829 0.90534 0.83523 0.75620 1.90758 1.70531 1.31246 1.48288 1.21699 0.91616 1.00232 1.04533 1.21080 0.92303 0.94158 1.05320 1.21684 0.97622 0.94267 1.04508 1.20692 0.82116 0.91682 0.76017 1.90745 1.55216 1.46502 1.49019 1.46181 1.06977 1.09019 1.75663 1.20152 0.89786 0.82931 1.02924 1.19687 0.94023 1.04946 0.93817 1.20991 0.94250 0.99940 0.97080 1.21123 0.93670 0.99452 0.98223 1.20392 0.97226 0.96086 0.92802 1.19708 0.86422 0.89418 0.98718 1.42336 1.04796 1.00431 1.89537 1.19237 0.83165 0.91858 1.43217 0.91066 1.24756 0.97707 0.95521 1.02786 1.69672 1.32673 0.98222 1.57351 0.86177 0.85002 0.77365 0.77548 1.21662 1.21715 1.20708 1.21123 0.93683 0.99466 0.98205 1.20994 0.94239 0.99933 0.97091 0.92223 0.92214 0.90697 0.76477 0.88669 0.88664 0.90304 0.90309 0.88747 0.88753 0.76399 0.90779 0.90790 0.86341 0.85819 0.95411 0.95412 0.78046 0.93430 0.85822 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.70 59.85 0.64 1.01 16 2 N -0.74 -3.34 5.71 -67.08 -0.38 -3.73 16 3 C 0.51 3.90 7.83 -10.98 -0.09 3.82 16 4 O -0.53 -6.80 15.98 5.55 0.09 -6.71 16 5 C -0.14 -0.64 5.70 -27.89 -0.16 -0.80 16 6 C -0.09 -0.70 3.79 -26.73 -0.10 -0.80 16 7 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 8 C 0.51 5.18 7.83 -10.98 -0.09 5.09 16 9 O -0.54 -8.00 15.98 5.56 0.09 -7.91 16 10 N -0.73 -6.56 5.55 -61.47 -0.34 -6.90 16 11 C 0.16 1.82 5.80 -5.20 -0.03 1.79 16 12 C -0.12 -1.51 5.25 -104.63 -0.55 -2.06 16 13 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 14 C -0.11 -1.61 9.70 -39.58 -0.38 -1.99 16 15 C -0.06 -1.09 5.25 -104.62 -0.55 -1.63 16 16 C 0.18 3.69 6.39 -5.19 -0.03 3.66 16 17 N -0.73 -18.50 5.59 -61.08 -0.34 -18.84 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.11 -1.61 9.70 -39.58 -0.38 -1.99 16 27 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.40 0.45 8.83 -40.82 -0.36 0.09 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.40 2.73 8.46 -40.82 -0.35 2.38 16 39 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 45 H 0.39 10.52 7.66 -40.82 -0.31 10.20 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 48 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 410.06 15.07 6.18 6.18 Total: -1.00 -37.31 410.06 -9.63 -46.95 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.73 Total: 7.04 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.89 Total: -5.74 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.34 Total: -57.07 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.18 Total: -14.62 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.31 -9.63 -46.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270059708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.243 kcal (2) G-P(sol) polarization free energy of solvation -37.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds