Wall clock time and date at job start Tue Mar 31 2020 17:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99987 * 2 1 4 4 O 1.21288 * 119.99558 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00399 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47101 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46976 * 180.02562 * 6 5 3 8 8 C 1.50699 * 109.46978 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99875 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99947 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46998 * 180.02562 * 11 10 8 13 13 C 1.38227 * 120.00136 * 90.00157 * 12 11 10 14 14 C 1.38244 * 120.00133 * 180.02562 * 13 12 11 15 15 C 1.38232 * 119.99611 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47064 * 89.99969 * 16 15 14 18 18 C 1.36936 * 119.99992 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00176 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46951 * 89.99797 * 22 20 18 24 24 H 1.48500 * 109.47313 * 210.00112 * 22 20 18 25 25 H 1.48501 * 109.46991 * 330.00153 * 22 20 18 26 26 C 1.38234 * 120.00312 * 0.25696 * 15 14 13 27 27 C 1.38239 * 119.99901 * 359.49432 * 26 15 14 28 28 H 1.08992 * 109.47545 * 300.00251 * 1 2 3 29 29 H 1.09001 * 109.47352 * 60.00558 * 1 2 3 30 30 H 1.09006 * 109.46762 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00521 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47044 * 59.99879 * 5 3 2 33 33 H 1.09001 * 109.46978 * 300.00094 * 5 3 2 34 34 H 1.09002 * 109.47346 * 60.00532 * 6 5 3 35 35 H 1.09001 * 109.47658 * 300.00139 * 6 5 3 36 36 H 1.08992 * 109.47272 * 60.00277 * 7 6 5 37 37 H 1.09001 * 109.46882 * 300.00420 * 7 6 5 38 38 H 0.97001 * 119.99724 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.47052 * 59.99964 * 11 10 8 40 40 H 1.09001 * 109.46973 * 300.00184 * 11 10 8 41 41 H 1.07996 * 120.00251 * 359.97438 * 13 12 11 42 42 H 1.07998 * 119.99981 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.47152 * 330.00052 * 16 15 14 44 44 H 1.09001 * 109.46980 * 210.00152 * 16 15 14 45 45 H 0.96996 * 119.99606 * 0.02562 * 17 16 15 46 46 H 0.97001 * 120.00803 * 179.97438 * 21 20 18 47 47 H 1.07998 * 120.00015 * 179.72855 * 26 15 14 48 48 H 1.08001 * 119.99843 * 180.23314 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1674 0.0006 6 6 4.1557 2.6099 -0.0002 7 6 5.6858 2.6099 -0.0002 8 6 6.1880 4.0308 -0.0004 9 8 5.3998 4.9526 -0.0009 10 7 7.5131 4.2771 -0.0009 11 6 8.0014 5.6584 -0.0016 12 6 9.5084 5.6584 -0.0028 13 6 10.1986 5.6582 -1.2004 14 6 11.5810 5.6577 -1.2015 15 6 12.2730 5.6580 -0.0049 16 6 13.7801 5.6569 -0.0061 17 7 14.2694 7.0378 -0.0073 18 6 15.6159 7.2870 -0.0080 19 1 16.3171 6.4656 -0.0080 20 6 16.0795 8.5953 -0.0086 21 7 15.2250 9.5964 -0.0081 22 14 17.9164 8.9354 -0.0102 23 1 18.4019 9.0252 -1.4107 24 1 18.1830 10.2179 0.6894 25 1 18.6244 7.8334 0.6894 26 6 11.5828 5.6534 1.1927 27 6 10.2004 5.6590 1.1938 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0089 0.6537 0.8908 34 1 3.7921 3.1243 0.8894 35 1 3.7927 3.1232 -0.8906 36 1 6.0491 2.0957 -0.8899 37 1 6.0491 2.0965 0.8900 38 1 8.1435 3.5399 -0.0017 39 1 7.6383 6.1725 0.8883 40 1 7.6376 6.1718 -0.8917 41 1 9.6579 5.6576 -2.1353 42 1 12.1203 5.6572 -2.1373 43 1 14.1424 5.1422 -0.8960 44 1 14.1437 5.1433 0.8840 45 1 13.6396 7.7755 -0.0069 46 1 15.5489 10.5107 -0.0082 47 1 12.1235 5.6491 2.1276 48 1 9.6612 5.6592 2.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270059708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:32 Heat of formation + Delta-G solvation = -83.156549 kcal Electronic energy + Delta-G solvation = -26163.066771 eV Core-core repulsion = 22216.151672 eV Total energy + Delta-G solvation = -3946.915100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03209 -40.62314 -40.11676 -36.96150 -35.79940 -35.61832 -35.17397 -33.72136 -31.90163 -31.84178 -30.23990 -28.43378 -27.14299 -25.85386 -24.17916 -23.61474 -23.15795 -21.68203 -21.36142 -21.16450 -19.32495 -18.65714 -17.75703 -17.26533 -17.18225 -16.78882 -16.72374 -16.66823 -16.33074 -16.12068 -15.83756 -15.24505 -15.04158 -15.03325 -14.80272 -14.37134 -14.33052 -14.15215 -13.80347 -13.72622 -13.37828 -13.19670 -13.08502 -13.00695 -12.82356 -12.76790 -12.69334 -12.39562 -12.18505 -11.95109 -11.90054 -11.72745 -11.68863 -11.07629 -10.98277 -10.84990 -10.11491 -10.09091 -9.80956 -9.62175 -9.03223 -7.95704 -5.26151 0.26055 0.51406 1.47880 1.49789 1.58386 1.67621 1.71084 2.18943 2.44061 2.56640 2.91653 3.37793 3.66630 3.74740 3.90362 3.92374 4.05686 4.10943 4.11520 4.14873 4.24923 4.29559 4.43215 4.57450 4.58324 4.63043 4.66783 4.71500 4.73116 4.76459 4.85687 4.90669 4.90764 4.95924 5.08481 5.20327 5.21043 5.36369 5.44242 5.47386 5.47927 5.52110 5.61299 5.82256 6.07228 6.24891 6.60450 6.61591 7.31659 7.31810 7.33254 8.04883 8.29655 9.27635 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.050647 B = 0.001342 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.717833 B =20864.725061 C =21086.444206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.725 5.725 3 C 0.497 3.503 4 O -0.597 6.597 5 C -0.129 4.129 6 C -0.089 4.089 7 C -0.128 4.128 8 C 0.503 3.497 9 O -0.594 6.594 10 N -0.714 5.714 11 C 0.169 3.831 12 C -0.108 4.108 13 C -0.099 4.099 14 C -0.115 4.115 15 C -0.088 4.088 16 C 0.185 3.815 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.074 4.074 21 N -0.970 5.970 22 Si 0.976 3.024 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.267 1.267 26 C -0.115 4.115 27 C -0.099 4.099 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.422 0.578 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.122 0.878 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.122 0.878 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.843 -27.510 0.061 37.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.378 5.378 3 C 0.286 3.714 4 O -0.478 6.478 5 C -0.168 4.168 6 C -0.128 4.128 7 C -0.167 4.167 8 C 0.292 3.708 9 O -0.474 6.474 10 N -0.366 5.366 11 C 0.046 3.954 12 C -0.109 4.109 13 C -0.117 4.117 14 C -0.133 4.133 15 C -0.088 4.088 16 C 0.060 3.940 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.192 1.192 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.259 0.741 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.159 0.841 42 H 0.140 0.860 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.204 0.796 46 H 0.060 0.940 47 H 0.140 0.860 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.655 -26.205 0.069 36.673 hybrid contribution 1.227 0.666 -0.018 1.396 sum -24.428 -25.540 0.051 35.341 Atomic orbital electron populations 1.21619 0.79695 1.04036 1.00955 1.45795 1.08056 1.08995 1.74957 1.21524 0.92066 0.83280 0.74560 1.90737 1.71957 1.33620 1.51506 1.21698 0.89039 0.98377 1.07705 1.20968 0.93872 0.95852 1.02060 1.21709 0.95766 0.91568 1.07677 1.21520 0.81742 0.93032 0.74542 1.90734 1.56555 1.48555 1.51567 1.46041 1.07105 1.08579 1.74920 1.19991 0.88727 0.84209 1.02490 1.19781 0.94502 1.03195 0.93377 1.21184 0.93332 0.98835 0.98360 1.21170 0.94719 0.99875 0.97559 1.20171 0.95395 0.99000 0.94256 1.19774 0.88983 0.86623 0.98648 1.42548 1.03916 1.02284 1.89472 1.19681 0.84591 0.92179 1.41567 0.90290 1.25601 1.02132 0.95433 1.03442 1.69838 1.34626 0.98300 1.59308 0.85109 0.79853 0.77102 0.77497 1.21306 1.22237 1.19166 1.21171 0.94729 0.99876 0.97541 1.21188 0.93325 0.98826 0.98372 0.93775 0.93768 0.87068 0.74097 0.85269 0.85262 0.93744 0.93748 0.85343 0.85349 0.74647 0.91340 0.91357 0.84140 0.86014 0.95093 0.95101 0.79565 0.93988 0.85997 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.70 127.77 1.37 2.00 16 2 N -0.73 -5.24 5.71 -484.51 -2.77 -8.01 16 3 C 0.50 7.27 7.83 87.65 0.69 7.95 16 4 O -0.60 -16.21 15.98 -3.05 -0.05 -16.26 16 5 C -0.13 -0.81 5.70 29.85 0.17 -0.64 16 6 C -0.09 -1.31 3.79 30.59 0.12 -1.20 16 7 C -0.13 -1.10 5.70 29.85 0.17 -0.93 16 8 C 0.50 9.46 7.83 87.66 0.69 10.14 16 9 O -0.59 -17.94 15.98 -3.04 -0.05 -17.98 16 10 N -0.71 -11.10 5.55 -466.78 -2.59 -13.69 16 11 C 0.17 3.45 5.80 85.63 0.50 3.94 16 12 C -0.11 -2.40 5.25 -19.87 -0.10 -2.50 16 13 C -0.10 -2.35 9.70 22.27 0.22 -2.14 16 14 C -0.11 -3.38 9.70 22.27 0.22 -3.16 16 15 C -0.09 -2.92 5.25 -19.87 -0.10 -3.03 16 16 C 0.19 7.45 6.39 85.63 0.55 8.00 16 17 N -0.74 -38.14 5.59 -347.16 -1.94 -40.09 16 18 C -0.25 -13.94 9.99 84.03 0.84 -13.11 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 22 Si 0.98 46.04 29.55 68.60 2.03 48.06 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 C -0.11 -3.37 9.70 22.27 0.22 -3.16 16 27 C -0.10 -2.35 9.70 22.27 0.22 -2.14 16 28 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.42 -0.45 8.83 -92.71 -0.82 -1.27 16 32 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 35 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.13 0.32 8.14 -2.39 -0.02 0.31 16 37 H 0.13 0.32 8.14 -2.39 -0.02 0.31 16 38 H 0.42 4.13 8.46 -92.71 -0.78 3.35 16 39 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 40 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 43 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 44 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 45 H 0.37 20.82 7.66 -92.71 -0.71 20.11 16 46 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 48 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -86.44 410.06 -0.22 -86.66 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -1.33 Total: 24.90 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.20 Total: -3.75 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -7.02 Total: -121.63 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.10 Total: -34.24 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -86.44 -0.22 -86.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270059708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.501 kcal (2) G-P(sol) polarization free energy of solvation -86.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds