Wall clock time and date at job start Tue Mar 31 2020 17:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35915 * 117.00271 * 2 1 4 4 C 1.39146 * 120.47298 * 0.20648 * 3 2 1 5 5 C 1.38530 * 118.37311 * 180.26792 * 4 3 2 6 6 C 1.38253 * 119.22297 * 359.74691 * 5 4 3 7 7 N 1.31853 * 120.88684 * 0.02562 * 6 5 4 8 8 C 1.31839 * 121.77640 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.65613 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47269 * 89.99897 * 9 8 7 11 11 O 1.21286 * 120.00220 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00293 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00001 * 179.97438 * 12 10 9 14 14 H 1.09004 * 110.01724 * 33.61102 * 13 12 10 15 15 C 1.54259 * 110.03350 * 272.16412 * 13 12 10 16 16 C 1.54890 * 104.19721 * 264.32591 * 15 13 12 17 17 C 1.54888 * 102.74845 * 322.05853 * 16 15 13 18 18 C 1.53877 * 110.03163 * 154.99756 * 13 12 10 19 19 H 1.09003 * 110.03133 * 359.95145 * 18 13 12 20 20 C 1.53001 * 110.03508 * 238.57045 * 18 13 12 21 21 N 1.46490 * 109.47264 * 174.99756 * 20 18 13 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.09005 * 109.47254 * 300.00671 * 1 2 3 31 31 H 1.09001 * 109.46907 * 59.99920 * 1 2 3 32 32 H 1.08994 * 109.47396 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.80863 * 0.02562 * 4 3 2 34 34 H 1.08005 * 120.38548 * 179.72980 * 5 4 3 35 35 H 1.07995 * 119.55798 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46857 * 330.00124 * 9 8 7 37 37 H 1.09003 * 109.46894 * 209.99902 * 9 8 7 38 38 H 0.96997 * 119.99500 * 359.97438 * 12 10 9 39 39 H 1.09003 * 110.48477 * 23.00627 * 15 13 12 40 40 H 1.08998 * 110.48713 * 145.64989 * 15 13 12 41 41 H 1.09003 * 110.75396 * 80.37336 * 16 15 13 42 42 H 1.08997 * 110.75901 * 203.55615 * 16 15 13 43 43 H 1.09000 * 110.48442 * 279.26009 * 17 16 15 44 44 H 1.09000 * 110.48713 * 156.61850 * 17 16 15 45 45 H 1.09003 * 109.46836 * 54.99463 * 20 18 13 46 46 H 1.08999 * 109.47071 * 295.00503 * 20 18 13 47 47 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3842 0.0043 5 6 1.9717 3.5946 -0.0016 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0054 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0329 0.0000 10 6 4.5346 -0.3840 1.4207 11 8 4.1072 0.2781 2.3427 12 7 5.2602 -1.4928 1.6670 13 6 5.5332 -1.8978 3.0481 14 1 4.6895 -1.6369 3.6872 15 6 6.8160 -1.2088 3.5571 16 6 7.9313 -2.2562 3.3156 17 6 7.2253 -3.5919 3.6567 18 6 5.7934 -3.4131 3.1114 19 1 5.7157 -3.8473 2.1146 20 6 4.7873 -4.0788 4.0525 21 7 4.9684 -5.5319 4.0120 22 6 4.1744 -6.3425 4.7787 23 1 3.4145 -5.9105 5.4129 24 6 4.3463 -7.7194 4.7409 25 7 5.2729 -8.2459 3.9684 26 14 3.2628 -8.8251 5.7862 27 1 3.6452 -10.2432 5.5673 28 1 3.4410 -8.4806 7.2197 29 1 1.8413 -8.6305 5.4033 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2185 2.3519 0.0082 34 1 1.4234 4.5251 -0.0028 35 1 3.8850 4.5381 -0.0103 36 1 5.1960 0.2138 -0.5181 37 1 3.7053 -0.7591 -0.5095 38 1 5.6016 -2.0226 0.9296 39 1 7.0142 -0.3018 2.9859 40 1 6.7307 -0.9806 4.6195 41 1 8.2533 -2.2443 2.2742 42 1 8.7762 -2.0814 3.9816 43 1 7.2061 -3.7487 4.7352 44 1 7.7222 -4.4242 3.1581 45 1 3.7743 -3.8299 3.7362 46 1 4.9487 -3.7206 5.0692 47 1 5.6512 -5.9200 3.4428 48 1 5.8353 -7.6717 3.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272302786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:49 Heat of formation + Delta-G solvation = -36.971416 kcal Electronic energy + Delta-G solvation = -28524.239729 eV Core-core repulsion = 24579.327367 eV Total energy + Delta-G solvation = -3944.912362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09965 -39.83756 -38.41102 -37.91804 -34.73118 -33.51518 -33.26017 -31.68682 -31.37820 -29.01599 -28.32097 -27.77412 -27.11681 -24.18938 -23.16140 -23.00570 -22.22852 -21.05683 -19.93747 -19.58027 -18.38959 -17.43495 -17.41828 -16.93934 -16.64324 -16.11334 -15.99613 -15.32051 -14.91540 -14.64945 -14.57724 -14.21641 -14.09114 -13.89414 -13.67576 -13.50684 -13.26915 -13.18301 -13.03297 -12.58166 -12.24572 -12.07926 -11.75928 -11.71235 -11.41800 -11.23438 -10.86002 -10.74543 -10.70784 -10.50594 -10.44332 -10.25639 -10.09184 -9.96256 -9.85179 -9.70459 -9.17253 -8.90337 -8.83920 -8.59949 -6.96605 -6.07723 -3.06525 0.81749 1.00745 2.72483 2.88083 3.13888 3.53427 3.57168 3.61945 3.74474 4.02183 4.30448 4.42132 4.60531 4.66381 4.73843 4.80191 4.82262 4.84679 4.86807 4.99135 5.07419 5.13074 5.18823 5.22300 5.45505 5.51372 5.58921 5.63438 5.69679 5.71344 5.78883 5.80734 5.85792 5.89778 6.03981 6.08692 6.14059 6.20495 6.26147 6.44182 6.56811 6.63169 6.74951 6.88214 6.89558 7.57173 7.73381 7.84351 8.30788 8.79017 9.26682 10.12988 10.28489 11.41127 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002605 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.626334 B =10745.084169 C =12314.831995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.094 3.906 4 C -0.166 4.166 5 C -0.134 4.134 6 C 0.061 3.939 7 N -0.439 5.439 8 C 0.127 3.873 9 C -0.088 4.088 10 C 0.524 3.476 11 O -0.536 6.536 12 N -0.720 5.720 13 C 0.148 3.852 14 H 0.091 0.909 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.104 4.104 19 H 0.076 0.924 20 C 0.167 3.833 21 N -0.742 5.742 22 C -0.329 4.329 23 H 0.063 0.937 24 C -0.047 4.047 25 N -0.945 5.945 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.399 0.601 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.018 0.982 46 H 0.022 0.978 47 H 0.367 0.633 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 23.408 -12.232 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.046 3.954 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.096 4.096 7 N -0.148 5.148 8 C -0.013 4.013 9 C -0.128 4.128 10 C 0.309 3.691 11 O -0.413 6.413 12 N -0.371 5.371 13 C 0.043 3.957 14 H 0.109 0.891 15 C -0.169 4.169 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.123 4.123 19 H 0.095 0.905 20 C 0.040 3.960 21 N -0.387 5.387 22 C -0.460 4.460 23 H 0.081 0.919 24 C -0.244 4.244 25 N -0.591 5.591 26 Si 0.911 3.089 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.175 0.825 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.233 0.767 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.200 0.800 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.929 22.222 -10.993 25.102 hybrid contribution -0.665 1.474 -0.884 1.843 sum -4.594 23.696 -11.877 26.901 Atomic orbital electron populations 1.23138 0.77951 1.04639 1.01243 1.86127 1.21696 1.25765 1.88078 1.19857 0.93094 0.85318 0.97137 1.21669 1.00777 0.92124 1.04657 1.21966 0.95762 0.98198 0.99470 1.22580 0.91445 0.96258 0.99273 1.67436 1.40030 0.97500 1.09835 1.19896 0.87738 0.93339 1.00326 1.20456 1.01694 0.94679 0.95991 1.20244 0.77674 0.80528 0.90651 1.90703 1.51220 1.53139 1.46208 1.46127 1.54813 1.27188 1.08970 1.21614 0.98136 0.93653 0.82291 0.89072 1.22736 0.94656 0.98060 1.01405 1.22530 0.97481 0.95242 1.00950 1.22374 0.94089 0.96687 1.01893 1.22241 0.96440 0.92950 1.00688 0.90532 1.20660 0.94763 0.85129 0.95473 1.42329 1.42715 1.00253 1.53437 1.20040 1.14076 0.90850 1.21035 0.91867 1.25762 1.01724 0.94699 1.02199 1.70886 1.22216 1.37057 1.28975 0.83243 0.74593 0.76208 0.74885 1.21039 1.22287 1.22321 0.92448 0.92618 0.87639 0.84288 0.84529 0.82461 0.87032 0.86861 0.76660 0.91580 0.90908 0.91903 0.91752 0.90864 0.91513 0.96383 0.96013 0.80020 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.18 16 2 O -0.31 -3.45 9.54 -19.47 -0.19 -3.64 16 3 C 0.09 1.10 6.67 -39.07 -0.26 0.84 16 4 C -0.17 -1.55 9.14 -39.14 -0.36 -1.90 16 5 C -0.13 -1.12 10.11 -39.47 -0.40 -1.52 16 6 C 0.06 0.60 11.18 -17.54 -0.20 0.41 16 7 N -0.44 -5.53 10.27 -9.35 -0.10 -5.63 16 8 C 0.13 1.61 5.29 -82.42 -0.44 1.17 16 9 C -0.09 -0.98 5.78 -29.04 -0.17 -1.14 16 10 C 0.52 7.41 7.82 -10.99 -0.09 7.32 16 11 O -0.54 -9.77 15.69 5.55 0.09 -9.69 16 12 N -0.72 -9.15 5.03 -52.72 -0.27 -9.42 16 13 C 0.15 2.17 2.90 -66.82 -0.19 1.98 16 14 H 0.09 1.56 7.09 -51.93 -0.37 1.19 16 15 C -0.13 -1.73 6.54 -25.08 -0.16 -1.89 16 16 C -0.12 -1.54 6.91 -24.74 -0.17 -1.71 16 17 C -0.11 -1.71 6.08 -25.07 -0.15 -1.86 16 18 C -0.10 -1.67 2.73 -89.50 -0.24 -1.91 16 19 H 0.08 1.21 7.62 -51.93 -0.40 0.82 16 20 C 0.17 3.50 5.31 -4.05 -0.02 3.48 16 21 N -0.74 -18.96 5.45 -59.91 -0.33 -19.29 16 22 C -0.33 -9.51 9.99 -15.06 -0.15 -9.66 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 25 N -0.95 -29.48 13.70 55.49 0.76 -28.72 16 26 Si 1.08 26.33 29.92 -169.99 -5.09 21.25 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.30 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 30 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 31 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 0.92 6.45 -52.49 -0.34 0.58 16 34 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.11 1.08 7.51 -51.93 -0.39 0.69 16 38 H 0.40 4.04 8.32 -40.82 -0.34 3.70 16 39 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 47 H 0.37 9.45 6.38 -40.82 -0.26 9.19 16 48 H 0.25 7.76 6.77 -40.82 -0.28 7.49 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -37.03 392.98 -8.71 -45.74 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.42 Total: 10.16 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.10 Total: -6.69 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.07 Total: -63.06 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.10 Total: -13.32 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.03 -8.71 -45.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272302786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.766 kcal (2) G-P(sol) polarization free energy of solvation -37.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds