Wall clock time and date at job start Tue Mar 31 2020 17:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35915 * 117.00271 * 2 1 4 4 C 1.39146 * 120.47298 * 0.20648 * 3 2 1 5 5 C 1.38530 * 118.37311 * 180.26792 * 4 3 2 6 6 C 1.38253 * 119.22297 * 359.74691 * 5 4 3 7 7 N 1.31853 * 120.88684 * 0.02562 * 6 5 4 8 8 C 1.31839 * 121.77640 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.65613 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47269 * 89.99897 * 9 8 7 11 11 O 1.21286 * 120.00220 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00293 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00001 * 179.97438 * 12 10 9 14 14 H 1.09004 * 110.01724 * 33.61102 * 13 12 10 15 15 C 1.54259 * 110.03350 * 272.16412 * 13 12 10 16 16 C 1.54890 * 104.19721 * 264.32591 * 15 13 12 17 17 C 1.54888 * 102.74845 * 322.05853 * 16 15 13 18 18 C 1.53877 * 110.03163 * 154.99756 * 13 12 10 19 19 H 1.09003 * 110.03133 * 359.95145 * 18 13 12 20 20 C 1.53001 * 110.03508 * 238.57045 * 18 13 12 21 21 N 1.46490 * 109.47264 * 174.99756 * 20 18 13 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.09005 * 109.47254 * 300.00671 * 1 2 3 31 31 H 1.09001 * 109.46907 * 59.99920 * 1 2 3 32 32 H 1.08994 * 109.47396 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.80863 * 0.02562 * 4 3 2 34 34 H 1.08005 * 120.38548 * 179.72980 * 5 4 3 35 35 H 1.07995 * 119.55798 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46857 * 330.00124 * 9 8 7 37 37 H 1.09003 * 109.46894 * 209.99902 * 9 8 7 38 38 H 0.96997 * 119.99500 * 359.97438 * 12 10 9 39 39 H 1.09003 * 110.48477 * 23.00627 * 15 13 12 40 40 H 1.08998 * 110.48713 * 145.64989 * 15 13 12 41 41 H 1.09003 * 110.75396 * 80.37336 * 16 15 13 42 42 H 1.08997 * 110.75901 * 203.55615 * 16 15 13 43 43 H 1.09000 * 110.48442 * 279.26009 * 17 16 15 44 44 H 1.09000 * 110.48713 * 156.61850 * 17 16 15 45 45 H 1.09003 * 109.46836 * 54.99463 * 20 18 13 46 46 H 1.08999 * 109.47071 * 295.00503 * 20 18 13 47 47 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3842 0.0043 5 6 1.9717 3.5946 -0.0016 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0054 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0329 0.0000 10 6 4.5346 -0.3840 1.4207 11 8 4.1072 0.2781 2.3427 12 7 5.2602 -1.4928 1.6670 13 6 5.5332 -1.8978 3.0481 14 1 4.6895 -1.6369 3.6872 15 6 6.8160 -1.2088 3.5571 16 6 7.9313 -2.2562 3.3156 17 6 7.2253 -3.5919 3.6567 18 6 5.7934 -3.4131 3.1114 19 1 5.7157 -3.8473 2.1146 20 6 4.7873 -4.0788 4.0525 21 7 4.9684 -5.5319 4.0120 22 6 4.1744 -6.3425 4.7787 23 1 3.4145 -5.9105 5.4129 24 6 4.3463 -7.7194 4.7409 25 7 5.2729 -8.2459 3.9684 26 14 3.2628 -8.8251 5.7862 27 1 3.6452 -10.2432 5.5673 28 1 3.4410 -8.4806 7.2197 29 1 1.8413 -8.6305 5.4033 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2185 2.3519 0.0082 34 1 1.4234 4.5251 -0.0028 35 1 3.8850 4.5381 -0.0103 36 1 5.1960 0.2138 -0.5181 37 1 3.7053 -0.7591 -0.5095 38 1 5.6016 -2.0226 0.9296 39 1 7.0142 -0.3018 2.9859 40 1 6.7307 -0.9806 4.6195 41 1 8.2533 -2.2443 2.2742 42 1 8.7762 -2.0814 3.9816 43 1 7.2061 -3.7487 4.7352 44 1 7.7222 -4.4242 3.1581 45 1 3.7743 -3.8299 3.7362 46 1 4.9487 -3.7206 5.0692 47 1 5.6512 -5.9200 3.4428 48 1 5.8353 -7.6717 3.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272302786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:48 Heat of formation + Delta-G solvation = -63.148622 kcal Electronic energy + Delta-G solvation = -28525.374858 eV Core-core repulsion = 24579.327367 eV Total energy + Delta-G solvation = -3946.047491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88961 -40.96551 -39.29959 -39.03261 -36.67009 -34.69048 -34.11265 -33.27051 -32.44056 -30.12467 -29.80462 -28.44119 -28.13516 -26.07735 -24.40128 -23.86899 -23.57132 -22.13025 -21.16473 -20.82881 -19.44262 -19.08400 -18.20363 -18.09629 -17.73770 -17.11755 -16.79570 -16.68329 -16.24476 -15.75561 -15.70960 -15.52083 -15.27852 -15.05386 -14.94067 -14.84316 -14.61694 -14.30606 -14.07690 -13.55439 -13.26676 -13.05875 -12.84842 -12.70226 -12.57077 -12.52604 -12.38715 -12.33554 -12.01150 -11.90604 -11.84702 -11.82918 -11.56526 -11.28234 -11.04647 -10.94424 -10.64341 -10.59900 -10.08183 -9.35798 -9.13820 -8.42420 -5.35922 0.08112 0.27710 1.57112 1.63050 1.66983 1.83942 2.12019 2.22448 2.69245 2.81983 3.27140 3.35652 3.39061 3.58714 3.62562 3.80014 3.80756 3.87444 4.00027 4.07080 4.23917 4.29990 4.30172 4.31765 4.39015 4.42763 4.45362 4.48332 4.54360 4.58786 4.66377 4.70102 4.77334 4.90543 4.92455 5.00482 5.03209 5.09706 5.09963 5.18449 5.26467 5.41752 5.48961 5.54822 5.57793 6.19791 6.48667 6.53933 6.98022 7.07383 7.24336 7.97408 8.09117 9.09963 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002605 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.626334 B =10745.084169 C =12314.831995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.075 3.925 4 C -0.170 4.170 5 C -0.126 4.126 6 C 0.047 3.953 7 N -0.466 5.466 8 C 0.095 3.905 9 C -0.080 4.080 10 C 0.522 3.478 11 O -0.581 6.581 12 N -0.709 5.709 13 C 0.155 3.845 14 H 0.063 0.937 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.111 4.111 18 C -0.091 4.091 19 H 0.083 0.917 20 C 0.169 3.831 21 N -0.750 5.750 22 C -0.340 4.340 23 H 0.060 0.940 24 C -0.100 4.100 25 N -0.971 5.971 26 Si 1.127 2.873 27 H -0.289 1.289 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.005 0.995 46 H 0.014 0.986 47 H 0.364 0.636 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 24.775 -13.054 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.027 3.973 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.110 4.110 7 N -0.176 5.176 8 C -0.044 4.044 9 C -0.120 4.120 10 C 0.310 3.690 11 O -0.461 6.461 12 N -0.361 5.361 13 C 0.049 3.951 14 H 0.081 0.919 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.149 4.149 18 C -0.110 4.110 19 H 0.101 0.899 20 C 0.042 3.958 21 N -0.395 5.395 22 C -0.471 4.471 23 H 0.078 0.922 24 C -0.292 4.292 25 N -0.619 5.619 26 Si 0.952 3.048 27 H -0.215 1.215 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.182 0.818 34 H 0.191 0.809 35 H 0.200 0.800 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.197 0.803 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.344 23.608 -11.844 26.767 hybrid contribution -0.609 1.148 -0.624 1.442 sum -4.953 24.757 -12.468 28.158 Atomic orbital electron populations 1.23377 0.76285 1.05636 1.02438 1.86078 1.23577 1.26118 1.88265 1.20069 0.93285 0.86194 0.97790 1.22072 1.02141 0.91724 1.03705 1.22388 0.95422 0.99360 0.97407 1.23151 0.92602 0.96494 0.98758 1.67412 1.41119 0.98228 1.10808 1.20100 0.88583 0.93752 1.01999 1.20453 1.02842 0.94915 0.93805 1.20797 0.76691 0.79994 0.91544 1.90675 1.52998 1.54611 1.47807 1.46002 1.54452 1.27070 1.08618 1.21363 0.97976 0.92609 0.83137 0.91913 1.22673 0.94025 0.98347 1.01197 1.22463 0.97120 0.92507 1.02543 1.22316 0.93608 0.98494 1.00482 1.22074 0.95765 0.93482 0.99673 0.89885 1.20734 0.95601 0.83159 0.96319 1.42460 1.42225 1.01835 1.52965 1.20367 1.14120 0.91628 1.20974 0.92197 1.27211 1.02464 0.96545 1.02955 1.70991 1.23439 1.37178 1.30303 0.82639 0.73808 0.74124 0.74260 1.21479 1.20495 1.20472 0.92148 0.90438 0.86868 0.81756 0.80888 0.80017 0.85014 0.85584 0.74889 0.91095 0.91292 0.89890 0.90220 0.92878 0.91628 0.97681 0.96775 0.80328 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.83 113.37 1.11 1.35 16 2 O -0.33 -7.35 9.54 -92.60 -0.88 -8.23 16 3 C 0.07 1.71 6.67 22.60 0.15 1.86 16 4 C -0.17 -2.89 9.14 22.56 0.21 -2.69 16 5 C -0.13 -1.83 10.11 22.34 0.23 -1.60 16 6 C 0.05 0.86 11.18 84.69 0.95 1.81 16 7 N -0.47 -11.52 10.27 -183.51 -1.88 -13.40 16 8 C 0.09 2.38 5.29 42.67 0.23 2.61 16 9 C -0.08 -1.75 5.78 29.10 0.17 -1.58 16 10 C 0.52 14.80 7.82 87.65 0.69 15.48 16 11 O -0.58 -21.71 15.69 -3.05 -0.05 -21.76 16 12 N -0.71 -17.67 5.03 -439.11 -2.21 -19.88 16 13 C 0.15 4.54 2.90 45.71 0.13 4.68 16 14 H 0.06 2.23 7.09 -2.38 -0.02 2.21 16 15 C -0.12 -3.17 6.54 31.67 0.21 -2.96 16 16 C -0.11 -2.47 6.91 31.89 0.22 -2.25 16 17 C -0.11 -3.30 6.08 31.67 0.19 -3.11 16 18 C -0.09 -2.92 2.73 -10.07 -0.03 -2.95 16 19 H 0.08 2.58 7.62 -2.39 -0.02 2.57 16 20 C 0.17 7.25 5.31 86.38 0.46 7.70 16 21 N -0.75 -39.08 5.45 -343.47 -1.87 -40.95 16 22 C -0.34 -19.84 9.99 84.03 0.84 -19.00 16 23 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 24 C -0.10 -5.93 5.50 84.86 0.47 -5.46 16 25 N -0.97 -61.11 13.70 21.65 0.30 -60.81 16 26 Si 1.13 52.81 29.92 68.60 2.05 54.86 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 H 0.06 0.77 7.69 -2.38 -0.02 0.75 16 31 H 0.08 0.69 7.71 -2.39 -0.02 0.67 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.17 1.77 6.45 -2.91 -0.02 1.75 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.13 2.35 7.51 -2.39 -0.02 2.33 16 38 H 0.41 7.82 8.32 -92.71 -0.77 7.05 16 39 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 1.79 7.76 -2.39 -0.02 1.77 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.01 0.64 8.00 -2.39 -0.02 0.62 16 47 H 0.36 19.16 6.38 -92.71 -0.59 18.56 16 48 H 0.25 15.28 6.77 -92.71 -0.63 14.66 16 Total: -1.00 -81.62 392.98 1.43 -80.19 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -0.24 Total: 36.10 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 6.21 Total: -6.11 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -5.67 Total: -135.05 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.93 Total: -29.99 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 2.05 Total: 54.86 kcal Total: -81.62 1.43 -80.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272302786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -81.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds