Wall clock time and date at job start Tue Mar 31 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35909 * 116.99918 * 2 1 4 4 C 1.39143 * 120.47068 * 0.02562 * 3 2 1 5 5 C 1.38544 * 118.37096 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.22066 * 359.97438 * 5 4 3 7 7 N 1.31850 * 120.88285 * 359.74850 * 6 5 4 8 8 C 1.31837 * 121.78353 * 0.52207 * 7 6 5 9 9 C 1.50701 * 119.65502 * 179.75445 * 8 7 6 10 10 C 1.50700 * 109.47266 * 269.72298 * 9 8 7 11 11 O 1.21281 * 119.99775 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99967 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99806 * 180.02562 * 12 10 9 14 14 H 1.09003 * 110.05463 * 326.41188 * 13 12 10 15 15 C 1.54263 * 110.03216 * 87.83421 * 13 12 10 16 16 C 1.54892 * 104.19428 * 142.89267 * 15 13 12 17 17 C 1.54886 * 102.74868 * 322.05731 * 16 15 13 18 18 C 1.53874 * 110.02797 * 205.00372 * 13 12 10 19 19 H 1.08999 * 110.03223 * 121.38329 * 18 13 12 20 20 C 1.52996 * 110.03650 * 359.97438 * 18 13 12 21 21 N 1.46498 * 109.47059 * 175.00048 * 20 18 13 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.09000 * 109.47223 * 60.00813 * 1 2 3 31 31 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47712 * 300.00392 * 1 2 3 33 33 H 1.07996 * 120.81679 * 359.96134 * 4 3 2 34 34 H 1.07997 * 120.38840 * 179.97438 * 5 4 3 35 35 H 1.07997 * 119.55210 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47076 * 149.72641 * 9 8 7 37 37 H 1.09002 * 109.47215 * 29.72572 * 9 8 7 38 38 H 0.97001 * 119.99871 * 0.02562 * 12 10 9 39 39 H 1.09003 * 110.48530 * 261.57376 * 15 13 12 40 40 H 1.08999 * 110.48723 * 24.21506 * 15 13 12 41 41 H 1.09000 * 110.75254 * 80.37224 * 16 15 13 42 42 H 1.08997 * 110.75639 * 203.55554 * 16 15 13 43 43 H 1.08998 * 110.48868 * 279.26552 * 17 16 15 44 44 H 1.09003 * 110.48430 * 156.61739 * 17 16 15 45 45 H 1.09004 * 109.47066 * 55.00316 * 20 18 13 46 46 H 1.08994 * 109.46974 * 295.00464 * 20 18 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 0.0005 5 6 1.9715 3.5947 0.0011 6 6 3.3541 3.5976 0.0016 7 7 4.0333 2.4675 0.0065 8 6 3.4305 1.2950 0.0010 9 6 4.2542 0.0331 0.0014 10 6 4.5293 -0.3878 -1.4192 11 8 4.0992 0.2723 -2.3413 12 7 5.2532 -1.4978 -1.6650 13 6 5.5211 -1.9066 -3.0461 14 1 4.6759 -1.6466 -3.6835 15 6 6.8026 -1.2198 -3.5614 16 6 7.4831 -2.2971 -4.4420 17 6 7.2098 -3.6035 -3.6562 18 6 5.7799 -3.4222 -3.1063 19 1 5.0599 -3.8978 -3.7723 20 6 5.6771 -4.0276 -1.7050 21 7 5.8068 -5.4842 -1.7916 22 6 5.7514 -6.2454 -0.6545 23 1 5.6077 -5.7721 0.3056 24 6 5.8800 -7.6251 -0.7359 25 7 6.0557 -8.2017 -1.9060 26 14 5.8038 -8.6634 0.8150 27 1 5.6002 -7.7810 1.9919 28 1 4.6739 -9.6218 0.7142 29 1 7.0761 -9.4130 0.9720 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2183 2.3518 0.0003 34 1 1.4232 4.5251 0.0011 35 1 3.8848 4.5382 0.0016 36 1 3.7073 -0.7576 0.5152 37 1 5.1979 0.2153 0.5156 38 1 5.5969 -2.0259 -0.9275 39 1 6.5519 -0.3423 -4.1575 40 1 7.4491 -0.9441 -2.7283 41 1 7.0224 -2.3365 -5.4291 42 1 8.5536 -2.1091 -4.5243 43 1 7.9220 -3.7128 -2.8383 44 1 7.2562 -4.4657 -4.3215 45 1 4.7104 -3.7741 -1.2697 46 1 6.4739 -3.6285 -1.0775 47 1 5.9362 -5.9093 -2.6538 48 1 6.1452 -9.1659 -1.9629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272302787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:51 Heat of formation + Delta-G solvation = -53.345552 kcal Electronic energy + Delta-G solvation = -28781.238018 eV Core-core repulsion = 24835.615620 eV Total energy + Delta-G solvation = -3945.622398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87143 -40.99408 -39.23990 -38.98310 -36.20383 -34.70288 -34.08495 -33.27778 -32.42040 -30.21303 -29.79565 -28.37541 -27.92208 -26.31641 -24.19575 -23.84231 -23.75743 -21.79241 -21.47217 -20.33874 -19.24691 -19.02505 -18.30894 -18.14677 -17.42455 -16.90296 -16.66481 -16.53577 -16.32941 -16.02952 -15.40025 -15.31560 -15.22432 -15.09047 -14.80557 -14.73741 -14.43957 -14.31067 -14.01565 -13.46634 -13.23905 -13.12638 -13.02230 -12.82542 -12.69665 -12.36269 -12.34768 -12.28996 -12.10487 -11.92730 -11.76467 -11.71234 -11.53681 -11.43459 -11.02555 -10.91904 -10.61932 -10.56773 -10.01125 -9.33176 -8.97058 -7.92694 -5.21087 0.10772 0.30503 1.49563 1.49789 1.59884 1.66658 2.18572 2.25982 2.57827 2.84597 3.29986 3.40915 3.48475 3.63246 3.69857 3.82790 3.87271 3.94766 4.08904 4.19437 4.26319 4.32561 4.34549 4.40216 4.47560 4.48073 4.51105 4.54478 4.56281 4.68793 4.69617 4.76921 4.80179 4.94470 5.01039 5.05536 5.09862 5.12031 5.22553 5.28787 5.36827 5.49175 5.51660 5.52713 5.60173 6.23282 6.29339 6.55379 7.01063 7.25348 7.36217 8.11771 8.34930 9.31221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.002948 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.555966 B = 9495.907726 C =11163.779267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.047 3.953 7 N -0.467 5.467 8 C 0.097 3.903 9 C -0.085 4.085 10 C 0.524 3.476 11 O -0.579 6.579 12 N -0.716 5.716 13 C 0.155 3.845 14 H 0.074 0.926 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.099 4.099 19 H 0.070 0.930 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.240 4.240 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.971 3.029 27 H -0.264 1.264 28 H -0.296 1.296 29 H -0.295 1.295 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.412 0.588 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.030 0.970 47 H 0.374 0.626 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 24.636 3.415 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.027 3.973 4 C -0.195 4.195 5 C -0.145 4.145 6 C -0.110 4.110 7 N -0.177 5.177 8 C -0.043 4.043 9 C -0.125 4.125 10 C 0.312 3.688 11 O -0.459 6.459 12 N -0.370 5.370 13 C 0.050 3.950 14 H 0.092 0.908 15 C -0.163 4.163 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.118 4.118 19 H 0.088 0.912 20 C 0.033 3.967 21 N -0.384 5.384 22 C -0.372 4.372 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.801 3.199 27 H -0.188 1.188 28 H -0.223 1.223 29 H -0.222 1.222 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.200 0.800 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.251 0.749 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.048 0.952 47 H 0.206 0.794 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.543 24.906 2.982 26.193 hybrid contribution -1.023 -1.367 0.538 1.790 sum -8.566 23.538 3.520 25.294 Atomic orbital electron populations 1.23381 0.76255 1.05637 1.02469 1.86093 1.23624 1.26120 1.88247 1.20050 0.93185 0.86248 0.97781 1.22068 1.02133 0.91612 1.03689 1.22392 0.95353 0.99377 0.97406 1.23158 0.92657 0.96429 0.98777 1.67403 1.41204 0.98240 1.10836 1.20041 0.88623 0.93572 1.02024 1.20458 1.02714 0.95041 0.94272 1.20687 0.76787 0.79986 0.91373 1.90642 1.53018 1.54677 1.47521 1.46310 1.54410 1.26873 1.09360 1.21507 0.98138 0.92609 0.82752 0.90767 1.22695 0.95614 0.98136 0.99808 1.22437 1.01220 0.93099 0.98291 1.22288 0.94833 0.98067 0.99464 1.22096 0.98663 0.93778 0.97311 0.91182 1.20816 0.97474 0.83618 0.94797 1.42539 1.87700 1.01686 1.06437 1.19691 1.39791 0.89329 0.88407 0.90298 1.25547 1.03752 0.98028 0.99540 1.69827 1.58650 1.09311 1.24329 0.85099 0.76522 0.78715 0.79597 1.18778 1.22346 1.22199 0.91885 0.86890 0.90590 0.81621 0.80795 0.80019 0.85960 0.85535 0.74912 0.91490 0.90887 0.90700 0.89902 0.92021 0.92272 0.96002 0.95183 0.79422 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.83 113.37 1.11 1.35 16 2 O -0.33 -7.69 9.55 -92.52 -0.88 -8.58 16 3 C 0.08 1.80 6.67 22.60 0.15 1.96 16 4 C -0.17 -2.93 9.14 22.56 0.21 -2.73 16 5 C -0.13 -1.87 10.11 22.35 0.23 -1.65 16 6 C 0.05 0.90 11.18 84.69 0.95 1.84 16 7 N -0.47 -12.17 10.27 -183.51 -1.88 -14.06 16 8 C 0.10 2.58 5.29 42.67 0.23 2.81 16 9 C -0.08 -2.11 5.77 29.10 0.17 -1.95 16 10 C 0.52 15.87 7.82 87.66 0.69 16.55 16 11 O -0.58 -21.61 15.69 -3.03 -0.05 -21.65 16 12 N -0.72 -20.11 4.39 -439.09 -1.93 -22.04 16 13 C 0.16 4.55 3.23 45.71 0.15 4.69 16 14 H 0.07 2.39 7.57 -2.39 -0.02 2.37 16 15 C -0.12 -3.17 6.53 31.67 0.21 -2.96 16 16 C -0.11 -2.69 6.91 31.88 0.22 -2.47 16 17 C -0.11 -3.28 6.08 31.67 0.19 -3.08 16 18 C -0.10 -3.21 2.96 -10.07 -0.03 -3.24 16 19 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 20 C 0.16 6.08 4.18 86.38 0.36 6.44 16 21 N -0.74 -36.77 5.45 -343.46 -1.87 -38.64 16 22 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 25 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 26 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 27 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 30 H 0.06 0.78 7.70 -2.39 -0.02 0.76 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 0.72 7.70 -2.39 -0.02 0.71 16 33 H 0.17 1.79 6.45 -2.91 -0.02 1.77 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.12 2.76 7.52 -2.39 -0.02 2.74 16 37 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.41 10.70 5.90 -92.71 -0.55 10.15 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.98 7.76 -2.39 -0.02 1.97 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.02 0.85 7.42 -2.38 -0.02 0.83 16 46 H 0.03 1.10 7.10 -2.39 -0.02 1.08 16 47 H 0.37 19.95 7.55 -92.71 -0.70 19.25 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -75.36 390.43 1.56 -73.80 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.27 Total: 40.93 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 6.13 Total: 1.39 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -5.40 Total: -133.56 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.93 Total: -30.23 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.36 1.56 -73.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272302787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.452 kcal (2) G-P(sol) polarization free energy of solvation -75.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds