Wall clock time and date at job start Tue Mar 31 2020 17:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35648 * 117.00290 * 2 1 4 4 C 1.39349 * 120.53809 * 359.97059 * 3 2 1 5 5 C 1.38302 * 118.43782 * 180.02562 * 4 3 2 6 6 C 1.38757 * 119.44711 * 0.02562 * 5 4 3 7 7 N 1.31377 * 121.06837 * 359.74636 * 6 5 4 8 8 C 1.32861 * 121.69601 * 0.51764 * 7 6 5 9 9 C 1.47828 * 119.78675 * 179.75275 * 8 7 6 10 10 O 1.21560 * 119.99730 * 179.72850 * 9 8 7 11 11 N 1.34773 * 119.99671 * 359.73304 * 9 8 7 12 12 C 1.46506 * 119.99591 * 174.59031 * 11 9 8 13 13 C 1.53005 * 109.46582 * 64.35684 * 12 11 9 14 14 N 1.46496 * 109.47597 * 54.81145 * 13 12 11 15 15 C 1.36932 * 120.00080 * 184.98182 * 14 13 12 16 16 H 1.08003 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00210 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99790 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47183 * 59.99394 * 19 17 15 21 21 H 1.48500 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47072 * 299.99599 * 19 17 15 23 23 C 1.53000 * 109.47010 * 184.35203 * 12 11 9 24 24 C 1.52999 * 109.47161 * 60.00137 * 23 12 11 25 25 C 1.52997 * 109.46842 * 60.00089 * 24 23 12 26 26 C 1.53000 * 109.47170 * 299.99906 * 25 24 23 27 27 C 1.52997 * 109.47503 * 304.35427 * 12 11 9 28 28 H 1.09002 * 109.46750 * 60.00507 * 1 2 3 29 29 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47557 * 300.00889 * 1 2 3 31 31 H 1.07997 * 120.77680 * 0.04832 * 4 3 2 32 32 H 1.08003 * 120.27343 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.46905 * 180.02562 * 6 5 4 34 34 H 0.96995 * 120.00522 * 354.60236 * 11 9 8 35 35 H 1.09008 * 109.46647 * 174.81281 * 13 12 11 36 36 H 1.09001 * 109.46720 * 294.80455 * 13 12 11 37 37 H 0.97004 * 119.99557 * 4.97166 * 14 13 12 38 38 H 0.97001 * 119.99895 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.47221 * 300.00427 * 23 12 11 40 40 H 1.08997 * 109.47066 * 180.02562 * 23 12 11 41 41 H 1.08996 * 109.47019 * 300.00184 * 24 23 12 42 42 H 1.09005 * 109.47074 * 180.02562 * 24 23 12 43 43 H 1.09006 * 109.47244 * 60.00252 * 25 24 23 44 44 H 1.09004 * 109.47204 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.46902 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.47066 * 299.99784 * 26 25 24 47 47 H 1.08997 * 109.47145 * 59.99909 * 27 12 11 48 48 H 1.08996 * 109.47235 * 180.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 -0.0006 5 6 1.9697 3.5928 -0.0011 6 6 3.3572 3.6011 -0.0016 7 7 4.0420 2.4799 0.0035 8 6 3.4411 1.2950 -0.0010 9 6 4.2532 0.0597 -0.0005 10 8 3.7074 -1.0264 0.0003 11 7 5.5986 0.1379 -0.0010 12 6 6.4032 -1.0806 0.1191 13 6 6.1681 -1.9693 -1.1040 14 7 6.4392 -1.2039 -2.3233 15 6 6.1977 -1.7622 -3.5501 16 1 5.8077 -2.7671 -3.6188 17 6 6.4551 -1.0372 -4.7055 18 7 6.9308 0.1872 -4.6218 19 14 6.1263 -1.7991 -6.3791 20 1 4.6876 -2.1505 -6.4890 21 1 6.4806 -0.8266 -7.4439 22 1 6.9487 -3.0257 -6.5347 23 6 7.8847 -0.7074 0.2012 24 6 8.1197 0.1814 1.4241 25 6 7.7134 -0.5753 2.6902 26 6 6.2319 -0.9485 2.6081 27 6 5.9969 -1.8373 1.3852 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 0.2175 2.3527 -0.0003 32 1 1.4195 4.5222 -0.0012 33 1 3.8829 4.5446 -0.0016 34 1 6.0343 1.0008 -0.0807 35 1 6.8343 -2.8311 -1.0603 36 1 5.1329 -2.3104 -1.1116 37 1 6.7897 -0.3015 -2.2616 38 1 7.1103 0.6940 -5.4292 39 1 8.1742 -0.1682 -0.7009 40 1 8.4833 -1.6140 0.2901 41 1 7.5211 1.0879 1.3348 42 1 9.1751 0.4477 1.4824 43 1 8.3121 -1.4819 2.7795 44 1 7.8813 0.0577 3.5616 45 1 5.9424 -1.4872 3.5103 46 1 5.6333 -0.0420 2.5189 47 1 4.9414 -2.1032 1.3266 48 1 6.5958 -2.7436 1.4747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276237321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:49 Heat of formation + Delta-G solvation = -26.729796 kcal Electronic energy + Delta-G solvation = -30509.147113 eV Core-core repulsion = 26564.678861 eV Total energy + Delta-G solvation = -3944.468252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89918 -39.80670 -38.15142 -37.25333 -34.51049 -33.11516 -32.36560 -31.11676 -30.67146 -30.43746 -29.05671 -27.48884 -25.13712 -24.62787 -22.89030 -22.86690 -22.17551 -21.06733 -20.24308 -18.62031 -18.33501 -17.55033 -17.06870 -16.96008 -15.95506 -15.46990 -15.12779 -14.92761 -14.57345 -14.46388 -14.21875 -13.94661 -13.76429 -13.60905 -13.36808 -13.11444 -13.07881 -12.75167 -12.57026 -12.11526 -11.99104 -11.87128 -11.57870 -11.53811 -11.52197 -11.15568 -10.82903 -10.75261 -10.68844 -10.38032 -10.10598 -9.96265 -9.93406 -9.87729 -9.70340 -9.50628 -9.07132 -8.66027 -8.47811 -8.21675 -6.71496 -5.61898 -2.87342 0.73836 1.20040 3.13094 3.15051 3.52632 3.56069 3.57213 3.58832 4.08500 4.35539 4.52036 4.65163 4.72012 4.89002 4.98893 5.02028 5.03433 5.05311 5.08407 5.14332 5.38156 5.46350 5.49805 5.51723 5.71762 5.73473 5.81128 5.84987 5.86273 5.87117 5.94701 6.02399 6.25448 6.29026 6.30233 6.36839 6.45457 6.48947 6.59383 6.66905 6.75808 6.82032 7.08760 7.17450 7.31613 7.77036 7.84638 8.21656 8.57782 8.85566 9.68689 10.28951 10.64671 11.61295 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.005352 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.209115 B = 5230.260178 C = 7112.370934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.269 6.269 3 C 0.134 3.866 4 C -0.179 4.179 5 C -0.114 4.114 6 C 0.056 3.944 7 N -0.417 5.417 8 C 0.056 3.944 9 C 0.578 3.422 10 O -0.511 6.511 11 N -0.688 5.688 12 C 0.177 3.823 13 C 0.141 3.859 14 N -0.724 5.724 15 C -0.226 4.226 16 H 0.067 0.933 17 C -0.017 4.017 18 N -0.936 5.936 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.287 1.287 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.129 4.129 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.404 0.596 35 H 0.018 0.982 36 H 0.046 0.954 37 H 0.382 0.618 38 H 0.252 0.748 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 6.669 16.764 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.083 3.917 4 C -0.205 4.205 5 C -0.134 4.134 6 C -0.104 4.104 7 N -0.128 5.128 8 C -0.083 4.083 9 C 0.363 3.637 10 O -0.386 6.386 11 N -0.340 5.340 12 C 0.091 3.909 13 C 0.013 3.987 14 N -0.368 5.368 15 C -0.358 4.358 16 H 0.085 0.915 17 C -0.213 4.213 18 N -0.586 5.586 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.168 4.168 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.240 0.760 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.216 0.784 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.104 0.896 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.110 5.509 16.654 19.325 hybrid contribution -1.144 0.693 -1.230 1.817 sum -9.254 6.203 15.423 19.026 Atomic orbital electron populations 1.23186 0.78941 1.04548 1.00906 1.86455 1.20542 1.24466 1.86350 1.20075 0.92472 0.85687 0.93440 1.21706 1.00875 0.91948 1.06004 1.22139 0.95822 0.98230 0.97244 1.22673 0.91313 0.96474 0.99977 1.67647 1.39856 0.97397 1.07923 1.20941 0.88664 0.93202 1.05543 1.17366 0.82337 0.86838 0.77202 1.90752 1.71772 1.27181 1.48905 1.45655 1.05079 1.10259 1.72981 1.20566 0.89887 0.85032 0.95384 1.21105 0.99247 0.92956 0.85435 1.42213 1.78199 1.16336 1.00043 1.19194 1.34806 0.97907 0.83883 0.91502 1.24665 1.02702 0.96448 0.97450 1.69650 1.51604 1.10082 1.27251 0.86305 0.77836 0.77900 0.84422 1.21547 1.21862 1.21414 1.21771 0.94559 1.00775 0.98558 1.21556 1.00785 0.98732 0.94666 1.21530 0.96534 0.99935 0.97399 1.21448 0.96160 0.99859 0.97590 1.21902 1.03708 0.98019 0.93177 0.92611 0.87737 0.92806 0.83943 0.84266 0.82000 0.75962 0.96456 0.93608 0.78399 0.93790 0.90235 0.90658 0.91950 0.92124 0.92227 0.92721 0.92714 0.92291 0.89563 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.19 16 2 O -0.27 -4.26 8.56 -40.59 -0.35 -4.61 16 3 C 0.13 2.07 6.71 -38.55 -0.26 1.81 16 4 C -0.18 -2.03 9.13 -39.14 -0.36 -2.39 16 5 C -0.11 -1.14 10.10 -39.37 -0.40 -1.54 16 6 C 0.06 0.67 11.17 -17.55 -0.20 0.47 16 7 N -0.42 -6.48 9.55 -9.71 -0.09 -6.57 16 8 C 0.06 0.98 6.76 -82.88 -0.56 0.42 16 9 C 0.58 11.37 7.13 -12.34 -0.09 11.28 16 10 O -0.51 -11.20 11.43 -16.64 -0.19 -11.39 16 11 N -0.69 -12.48 3.47 -48.54 -0.17 -12.65 16 12 C 0.18 3.15 0.32 -131.82 -0.04 3.11 16 13 C 0.14 3.16 4.94 -4.04 -0.02 3.14 16 14 N -0.72 -19.25 5.19 -59.91 -0.31 -19.56 16 15 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 17 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 18 N -0.94 -29.18 13.06 55.49 0.72 -28.46 16 19 Si 0.90 23.56 29.55 -169.99 -5.02 18.54 16 20 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 C -0.12 -1.89 4.64 -26.73 -0.12 -2.01 16 24 C -0.12 -1.55 5.75 -26.73 -0.15 -1.71 16 25 C -0.12 -1.39 5.92 -26.73 -0.16 -1.54 16 26 C -0.11 -1.51 5.77 -26.73 -0.15 -1.66 16 27 C -0.13 -2.04 4.45 -26.73 -0.12 -2.16 16 28 H 0.06 0.48 7.70 -51.93 -0.40 0.08 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.41 7.70 -51.93 -0.40 0.01 16 31 H 0.14 1.16 6.46 -52.49 -0.34 0.82 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.40 7.07 6.81 -40.82 -0.28 6.79 16 35 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.05 1.14 6.45 -51.93 -0.34 0.81 16 37 H 0.38 10.48 6.46 -40.82 -0.26 10.22 16 38 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.08 1.45 7.09 -51.93 -0.37 1.08 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.82 6.95 -51.93 -0.36 0.46 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.85 7.53 -51.93 -0.39 0.46 16 47 H 0.09 1.55 6.04 -51.93 -0.31 1.23 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -35.57 376.82 -8.83 -44.41 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.22 Total: 13.69 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.88 Total: 0.93 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: 0.15 Total: -67.24 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.54 Total: -15.99 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.57 -8.83 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276237321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.676 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds