Wall clock time and date at job start Tue Mar 31 2020 17:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 119.99774 * 2 1 4 4 H 1.08009 * 119.99449 * 202.98395 * 3 2 1 5 5 C 1.38808 * 120.00204 * 22.99063 * 3 2 1 6 6 N 1.31622 * 119.99942 * 11.64520 * 5 3 2 7 7 Si 1.86805 * 120.00005 * 191.64256 * 5 3 2 8 8 H 1.48504 * 109.47111 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46873 * 119.99887 * 7 5 3 10 10 H 1.48495 * 109.47117 * 240.00214 * 7 5 3 11 11 C 1.46503 * 120.00029 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45741 * 300.00311 * 11 2 1 13 13 C 1.53197 * 109.30878 * 181.38245 * 12 11 2 14 14 N 1.46921 * 108.77674 * 305.36725 * 13 12 11 15 15 C 1.34774 * 120.63150 * 233.58432 * 14 13 12 16 16 O 1.21281 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00512 * 180.02562 * 15 14 13 18 18 O 1.42894 * 109.47663 * 180.02562 * 17 15 14 19 19 C 1.42901 * 114.00394 * 180.02562 * 18 17 15 20 20 C 1.50694 * 109.47222 * 179.97438 * 19 18 17 21 21 C 1.38657 * 120.78946 * 89.99988 * 20 19 18 22 22 C 1.38194 * 119.16388 * 179.97438 * 21 20 19 23 23 N 1.31872 * 120.76816 * 0.02562 * 22 21 20 24 24 C 1.31869 * 121.72275 * 359.95205 * 23 22 21 25 25 C 1.38208 * 120.76552 * 0.04599 * 24 23 22 26 26 C 1.46928 * 118.74331 * 53.85874 * 14 13 12 27 27 C 1.53043 * 109.45717 * 60.07343 * 11 2 1 28 28 H 1.08993 * 109.47398 * 273.84477 * 1 2 3 29 29 H 1.09009 * 109.47002 * 33.84305 * 1 2 3 30 30 H 1.09002 * 109.47314 * 153.84320 * 1 2 3 31 31 H 0.97002 * 119.99718 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.45001 * 180.02562 * 11 2 1 33 33 H 1.09001 * 109.49527 * 61.43552 * 12 11 2 34 34 H 1.08990 * 109.52455 * 301.34626 * 12 11 2 35 35 H 1.08994 * 109.58412 * 185.57832 * 13 12 11 36 36 H 1.09007 * 109.69888 * 65.21986 * 13 12 11 37 37 H 1.09007 * 109.46812 * 59.99692 * 17 15 14 38 38 H 1.09004 * 109.46784 * 300.00247 * 17 15 14 39 39 H 1.09005 * 109.46586 * 59.99994 * 19 18 17 40 40 H 1.09001 * 109.47141 * 299.99845 * 19 18 17 41 41 H 1.08006 * 120.41299 * 359.70889 * 21 20 19 42 42 H 1.08003 * 119.61979 * 180.02562 * 22 21 20 43 43 H 1.08005 * 119.61855 * 180.02562 * 24 23 22 44 44 H 1.07994 * 120.41956 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.58504 * 65.92586 * 26 14 13 46 46 H 1.08995 * 109.59281 * 186.35432 * 26 14 13 47 47 H 1.09002 * 109.49645 * 298.56068 * 27 11 2 48 48 H 1.08990 * 109.49971 * 58.66096 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1654 1.2230 -0.3653 5 6 1.5383 2.3403 0.4695 6 7 0.3978 2.2623 1.1220 7 14 2.3342 4.0046 0.1754 8 1 3.6012 3.8213 -0.5771 9 1 1.4116 4.8624 -0.6109 10 1 2.6221 4.6530 1.4800 11 6 2.1975 -1.2688 0.0006 12 6 1.8275 -2.0705 1.2506 13 6 2.6211 -3.3808 1.2653 14 7 2.3849 -4.0910 0.0010 15 6 1.9587 -5.3696 0.0009 16 8 1.7661 -5.9447 1.0511 17 6 1.7214 -6.0847 -1.3042 18 8 1.2764 -7.4173 -1.0433 19 6 1.0217 -8.1861 -2.2206 20 6 0.5612 -9.5666 -1.8292 21 6 -0.7857 -9.8402 -1.6463 22 6 -1.1707 -11.1181 -1.2880 23 7 -0.2742 -12.0706 -1.1198 24 6 1.0147 -11.8467 -1.2856 25 6 1.4742 -10.5934 -1.6439 26 6 2.6278 -3.3829 -1.2632 27 6 1.8289 -2.0708 -1.2497 28 1 -0.3634 0.0689 1.0253 29 1 -0.3633 0.8536 -0.5724 30 1 -0.3634 -0.9224 -0.4530 31 1 -0.0296 3.0691 1.4497 32 1 3.2691 -1.0692 0.0009 33 1 0.7602 -2.2917 1.2382 34 1 2.0683 -1.4893 2.1406 35 1 2.2897 -3.9993 2.0993 36 1 3.6845 -3.1651 1.3701 37 1 2.6495 -6.1164 -1.8751 38 1 0.9608 -5.5535 -1.8765 39 1 1.9357 -8.2618 -2.8098 40 1 0.2471 -7.6985 -2.8125 41 1 -1.5243 -9.0632 -1.7780 42 1 -2.2179 -11.3395 -1.1440 43 1 1.7195 -12.6519 -1.1394 44 1 2.5311 -10.4162 -1.7778 45 1 3.6914 -3.1652 -1.3616 46 1 2.3009 -4.0027 -2.0980 47 1 0.7617 -2.2920 -1.2385 48 1 2.0711 -1.4895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277435551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:48 Heat of formation + Delta-G solvation = -11.981608 kcal Electronic energy + Delta-G solvation = -28098.238594 eV Core-core repulsion = 24154.409871 eV Total energy + Delta-G solvation = -3943.828723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54902 -40.12338 -38.20338 -37.23330 -35.09737 -33.58709 -32.30187 -31.55813 -31.07636 -29.88231 -28.51272 -26.59527 -26.03025 -24.69326 -23.82185 -22.87788 -22.38267 -22.08990 -20.00911 -18.62825 -17.70926 -17.06267 -17.01710 -16.78617 -16.54278 -16.10702 -15.94003 -15.61887 -15.04704 -14.72548 -14.24060 -14.09439 -14.00837 -13.96999 -13.63031 -13.51343 -13.18770 -13.00890 -12.60693 -12.45217 -12.23677 -12.01545 -11.88048 -11.76107 -11.49798 -10.99625 -10.89943 -10.82823 -10.42442 -10.25506 -10.18209 -10.13811 -10.12035 -9.89036 -9.84140 -9.71193 -9.57386 -9.48971 -8.61191 -8.50999 -6.78315 -5.75154 -3.21898 0.76538 0.79825 2.59527 2.67588 3.34567 3.38741 3.41765 3.43599 3.74761 4.12726 4.26378 4.30717 4.44579 4.54033 4.66728 4.75507 4.76764 4.86971 4.94069 4.96494 5.00345 5.17579 5.26089 5.32674 5.35684 5.42954 5.46388 5.53891 5.58667 5.73143 5.84027 5.93152 5.96411 6.10715 6.20327 6.30608 6.33040 6.47818 6.51668 6.67682 6.76580 6.93768 6.97288 7.36507 7.43952 7.61643 7.71369 7.78114 8.19642 8.37235 9.20944 9.84292 10.33656 11.29611 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.001889 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.240588 B =14820.087593 C =14951.609197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.605 5.605 15 C 0.515 3.485 16 O -0.527 6.527 17 C 0.045 3.955 18 O -0.356 6.356 19 C 0.099 3.901 20 C -0.044 4.044 21 C -0.150 4.150 22 C 0.096 3.904 23 N -0.483 5.483 24 C 0.095 3.905 25 C -0.151 4.151 26 C 0.108 3.892 27 C -0.148 4.148 28 H 0.027 0.973 29 H 0.042 0.958 30 H -0.003 1.003 31 H 0.252 0.748 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.137 0.863 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -22.349 -10.100 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.070 3.930 12 C -0.185 4.185 13 C -0.007 4.007 14 N -0.340 5.340 15 C 0.301 3.699 16 O -0.403 6.403 17 C -0.035 4.035 18 O -0.274 6.274 19 C 0.022 3.978 20 C -0.052 4.052 21 C -0.170 4.170 22 C -0.061 4.061 23 N -0.192 5.192 24 C -0.062 4.062 25 C -0.171 4.171 26 C -0.015 4.015 27 C -0.188 4.188 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.155 0.845 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.154 0.846 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.747 -23.391 -9.042 25.139 hybrid contribution 0.605 2.128 -0.634 2.302 sum 2.352 -21.263 -9.676 23.479 Atomic orbital electron populations 1.20736 0.82756 0.95387 0.99141 1.43964 1.01786 1.00164 1.85856 1.19257 0.98269 0.85486 1.35407 0.91383 1.25047 0.97804 0.98561 0.98310 1.70080 1.18502 1.27054 1.39561 0.86194 0.78591 0.84362 0.77428 1.20351 1.21683 1.21750 1.20282 0.96047 0.86086 0.90552 1.22509 1.00020 0.94356 1.01595 1.21714 0.99879 0.93708 0.85379 1.48116 1.66168 1.11310 1.08415 1.20072 0.77548 0.81741 0.90531 1.90716 1.50690 1.65751 1.33130 1.22303 1.00609 0.84408 0.96150 1.88088 1.87388 1.22760 1.29145 1.21369 1.00264 0.88345 0.87820 1.19966 0.93688 0.94492 0.97075 1.22122 0.96184 0.98689 0.99971 1.22793 0.99548 0.88789 0.94951 1.67674 1.02754 1.35534 1.13278 1.22785 0.92344 0.95966 0.95066 1.22096 1.00851 0.93944 1.00160 1.21944 1.00646 0.94345 0.84599 1.22567 1.00079 0.94625 1.01556 0.95470 0.93916 0.98500 0.93802 0.91857 0.92205 0.90510 0.89595 0.91585 0.90156 0.89966 0.91650 0.91557 0.84466 0.82477 0.82527 0.84561 0.91018 0.90732 0.91859 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.03 59.84 0.48 4.41 16 2 N -0.60 -14.16 2.81 -173.43 -0.49 -14.64 16 3 C -0.25 -6.72 9.59 -15.06 -0.14 -6.86 16 4 H 0.07 1.75 7.82 -52.48 -0.41 1.34 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.91 -26.04 10.64 55.49 0.59 -25.45 16 7 Si 0.90 21.37 29.57 -169.99 -5.03 16.35 16 8 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.18 3.34 2.55 -67.88 -0.17 3.17 16 12 C -0.14 -2.55 5.34 -26.61 -0.14 -2.69 16 13 C 0.12 1.73 6.43 -3.71 -0.02 1.70 16 14 N -0.60 -8.23 2.97 -172.50 -0.51 -8.74 16 15 C 0.51 7.45 7.77 -10.99 -0.09 7.36 16 16 O -0.53 -9.93 15.91 -14.35 -0.23 -10.16 16 17 C 0.05 0.46 4.76 36.01 0.17 0.63 16 18 O -0.36 -4.26 9.86 -55.14 -0.54 -4.80 16 19 C 0.10 0.78 6.11 36.00 0.22 1.00 16 20 C -0.04 -0.39 5.55 -104.32 -0.58 -0.97 16 21 C -0.15 -1.28 9.82 -39.44 -0.39 -1.67 16 22 C 0.10 0.84 11.18 -17.55 -0.20 0.65 16 23 N -0.48 -4.94 10.36 -13.25 -0.14 -5.08 16 24 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 25 C -0.15 -1.24 9.82 -39.44 -0.39 -1.63 16 26 C 0.11 1.21 6.37 -3.48 -0.02 1.19 16 27 C -0.15 -2.20 5.34 -26.38 -0.14 -2.34 16 28 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.11 7.22 -51.92 -0.37 0.73 16 30 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.19 7.86 -51.93 -0.41 0.78 16 33 H 0.06 1.14 7.72 -51.93 -0.40 0.74 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 38 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 39 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 40 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.61 5.93 -51.93 -0.31 0.30 16 47 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -34.47 387.52 -9.71 -44.18 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.51 Total: -2.00 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.69 Total: 4.52 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.55 Total: -53.92 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.77 Total: -14.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.47 -9.71 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277435551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.194 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds