Wall clock time and date at job start Tue Mar 31 2020 17:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 119.99774 * 2 1 4 4 H 1.08009 * 119.99449 * 202.98395 * 3 2 1 5 5 C 1.38808 * 120.00204 * 22.99063 * 3 2 1 6 6 N 1.31622 * 119.99942 * 11.64520 * 5 3 2 7 7 Si 1.86805 * 120.00005 * 191.64256 * 5 3 2 8 8 H 1.48504 * 109.47111 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46873 * 119.99887 * 7 5 3 10 10 H 1.48495 * 109.47117 * 240.00214 * 7 5 3 11 11 C 1.46503 * 120.00029 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45741 * 300.00311 * 11 2 1 13 13 C 1.53197 * 109.30878 * 181.38245 * 12 11 2 14 14 N 1.46921 * 108.77674 * 305.36725 * 13 12 11 15 15 C 1.34774 * 120.63150 * 233.58432 * 14 13 12 16 16 O 1.21281 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00512 * 180.02562 * 15 14 13 18 18 O 1.42894 * 109.47663 * 180.02562 * 17 15 14 19 19 C 1.42901 * 114.00394 * 180.02562 * 18 17 15 20 20 C 1.50694 * 109.47222 * 179.97438 * 19 18 17 21 21 C 1.38657 * 120.78946 * 89.99988 * 20 19 18 22 22 C 1.38194 * 119.16388 * 179.97438 * 21 20 19 23 23 N 1.31872 * 120.76816 * 0.02562 * 22 21 20 24 24 C 1.31869 * 121.72275 * 359.95205 * 23 22 21 25 25 C 1.38208 * 120.76552 * 0.04599 * 24 23 22 26 26 C 1.46928 * 118.74331 * 53.85874 * 14 13 12 27 27 C 1.53043 * 109.45717 * 60.07343 * 11 2 1 28 28 H 1.08993 * 109.47398 * 273.84477 * 1 2 3 29 29 H 1.09009 * 109.47002 * 33.84305 * 1 2 3 30 30 H 1.09002 * 109.47314 * 153.84320 * 1 2 3 31 31 H 0.97002 * 119.99718 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.45001 * 180.02562 * 11 2 1 33 33 H 1.09001 * 109.49527 * 61.43552 * 12 11 2 34 34 H 1.08990 * 109.52455 * 301.34626 * 12 11 2 35 35 H 1.08994 * 109.58412 * 185.57832 * 13 12 11 36 36 H 1.09007 * 109.69888 * 65.21986 * 13 12 11 37 37 H 1.09007 * 109.46812 * 59.99692 * 17 15 14 38 38 H 1.09004 * 109.46784 * 300.00247 * 17 15 14 39 39 H 1.09005 * 109.46586 * 59.99994 * 19 18 17 40 40 H 1.09001 * 109.47141 * 299.99845 * 19 18 17 41 41 H 1.08006 * 120.41299 * 359.70889 * 21 20 19 42 42 H 1.08003 * 119.61979 * 180.02562 * 22 21 20 43 43 H 1.08005 * 119.61855 * 180.02562 * 24 23 22 44 44 H 1.07994 * 120.41956 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.58504 * 65.92586 * 26 14 13 46 46 H 1.08995 * 109.59281 * 186.35432 * 26 14 13 47 47 H 1.09002 * 109.49645 * 298.56068 * 27 11 2 48 48 H 1.08990 * 109.49971 * 58.66096 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1654 1.2230 -0.3653 5 6 1.5383 2.3403 0.4695 6 7 0.3978 2.2623 1.1220 7 14 2.3342 4.0046 0.1754 8 1 3.6012 3.8213 -0.5771 9 1 1.4116 4.8624 -0.6109 10 1 2.6221 4.6530 1.4800 11 6 2.1975 -1.2688 0.0006 12 6 1.8275 -2.0705 1.2506 13 6 2.6211 -3.3808 1.2653 14 7 2.3849 -4.0910 0.0010 15 6 1.9587 -5.3696 0.0009 16 8 1.7661 -5.9447 1.0511 17 6 1.7214 -6.0847 -1.3042 18 8 1.2764 -7.4173 -1.0433 19 6 1.0217 -8.1861 -2.2206 20 6 0.5612 -9.5666 -1.8292 21 6 -0.7857 -9.8402 -1.6463 22 6 -1.1707 -11.1181 -1.2880 23 7 -0.2742 -12.0706 -1.1198 24 6 1.0147 -11.8467 -1.2856 25 6 1.4742 -10.5934 -1.6439 26 6 2.6278 -3.3829 -1.2632 27 6 1.8289 -2.0708 -1.2497 28 1 -0.3634 0.0689 1.0253 29 1 -0.3633 0.8536 -0.5724 30 1 -0.3634 -0.9224 -0.4530 31 1 -0.0296 3.0691 1.4497 32 1 3.2691 -1.0692 0.0009 33 1 0.7602 -2.2917 1.2382 34 1 2.0683 -1.4893 2.1406 35 1 2.2897 -3.9993 2.0993 36 1 3.6845 -3.1651 1.3701 37 1 2.6495 -6.1164 -1.8751 38 1 0.9608 -5.5535 -1.8765 39 1 1.9357 -8.2618 -2.8098 40 1 0.2471 -7.6985 -2.8125 41 1 -1.5243 -9.0632 -1.7780 42 1 -2.2179 -11.3395 -1.1440 43 1 1.7195 -12.6519 -1.1394 44 1 2.5311 -10.4162 -1.7778 45 1 3.6914 -3.1652 -1.3616 46 1 2.3009 -4.0027 -2.0980 47 1 0.7617 -2.2920 -1.2385 48 1 2.0711 -1.4895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277435551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:47 Heat of formation + Delta-G solvation = -33.384478 kcal Electronic energy + Delta-G solvation = -28099.166692 eV Core-core repulsion = 24154.409871 eV Total energy + Delta-G solvation = -3944.756821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.32707 -41.04671 -39.23226 -38.36498 -36.68452 -34.25307 -33.94186 -32.33472 -32.14387 -31.47012 -29.39526 -28.02847 -27.33683 -26.09195 -24.41824 -24.08488 -23.68229 -22.97705 -21.32266 -19.85462 -18.76411 -18.57940 -17.75469 -17.69683 -17.41397 -16.97993 -16.90050 -16.58649 -16.47551 -15.74644 -15.64017 -15.21647 -15.09801 -14.90051 -14.73053 -14.62648 -14.47789 -14.13760 -13.85487 -13.73839 -13.20132 -13.16572 -13.07947 -12.80198 -12.72261 -12.65351 -12.45146 -12.34262 -12.17857 -12.02215 -11.81416 -11.60426 -11.22546 -10.89678 -10.75429 -10.67066 -10.59305 -10.46908 -10.08761 -9.68509 -8.75078 -7.80313 -5.28635 0.14078 0.20084 1.46998 1.48448 1.54967 1.58408 1.75894 2.51905 2.67703 3.08100 3.33507 3.47325 3.59356 3.63998 3.79761 3.83445 3.89802 4.11519 4.13081 4.18235 4.20727 4.21177 4.27491 4.33812 4.40494 4.45156 4.46828 4.58089 4.70970 4.72683 4.81798 4.84282 4.88943 4.93209 4.99356 5.00983 5.11424 5.26520 5.34758 5.36223 5.51609 5.60758 5.68318 5.73687 5.75863 6.00693 6.35609 6.42077 7.00265 7.13898 7.17618 7.90848 8.35264 9.23158 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.001889 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.240588 B =14820.087593 C =14951.609197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.255 4.255 4 H 0.077 0.923 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.967 3.033 8 H -0.262 1.262 9 H -0.294 1.294 10 H -0.297 1.297 11 C 0.171 3.829 12 C -0.132 4.132 13 C 0.125 3.875 14 N -0.604 5.604 15 C 0.507 3.493 16 O -0.582 6.582 17 C 0.049 3.951 18 O -0.392 6.392 19 C 0.097 3.903 20 C -0.061 4.061 21 C -0.159 4.159 22 C 0.082 3.918 23 N -0.512 5.512 24 C 0.082 3.918 25 C -0.155 4.155 26 C 0.113 3.887 27 C -0.137 4.137 28 H -0.007 1.007 29 H 0.015 0.985 30 H 0.027 0.973 31 H 0.245 0.755 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.178 0.822 44 H 0.157 0.843 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.053 0.947 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -23.362 -12.886 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.385 4.385 4 H 0.094 0.906 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.796 3.204 8 H -0.186 1.186 9 H -0.221 1.221 10 H -0.225 1.225 11 C 0.065 3.935 12 C -0.172 4.172 13 C 0.001 3.999 14 N -0.338 5.338 15 C 0.297 3.703 16 O -0.461 6.461 17 C -0.029 4.029 18 O -0.311 6.311 19 C 0.022 3.978 20 C -0.069 4.069 21 C -0.178 4.178 22 C -0.075 4.075 23 N -0.222 5.222 24 C -0.074 4.074 25 C -0.175 4.175 26 C -0.009 4.009 27 C -0.177 4.177 28 H 0.011 0.989 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.169 0.831 42 H 0.192 0.808 43 H 0.195 0.805 44 H 0.174 0.826 45 H 0.112 0.888 46 H 0.137 0.863 47 H 0.072 0.928 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.605 -24.429 -11.879 27.403 hybrid contribution 0.051 2.374 0.250 2.388 sum 3.656 -22.055 -11.629 25.200 Atomic orbital electron populations 1.20389 0.83395 0.95549 0.96838 1.44218 1.01759 1.01476 1.85906 1.19652 0.98497 0.86553 1.33814 0.90554 1.25825 0.98613 1.01997 0.98922 1.70260 1.20135 1.27308 1.41349 0.85189 0.78182 0.80160 0.76836 1.18566 1.22143 1.22465 1.20570 0.95622 0.84644 0.92710 1.22294 0.99206 0.95533 1.00207 1.21465 1.00184 0.91862 0.86344 1.48196 1.65689 1.11407 1.08536 1.20972 0.76065 0.81637 0.91669 1.90695 1.52938 1.66984 1.35525 1.22404 1.03285 0.83749 0.93502 1.88038 1.87875 1.23650 1.31578 1.21566 1.02123 0.87241 0.86880 1.20308 0.93970 0.95476 0.97182 1.22365 0.96767 0.98928 0.99774 1.23159 1.00363 0.88973 0.94958 1.67685 1.03714 1.36485 1.14339 1.23208 0.92306 0.97034 0.94867 1.22374 1.01895 0.93655 0.99568 1.22131 1.01422 0.92708 0.84628 1.22385 1.00154 0.96039 0.99152 0.98867 0.96652 0.95486 0.94552 0.91642 0.94151 0.93149 0.91123 0.89755 0.86246 0.87332 0.89085 0.89682 0.83074 0.80787 0.80527 0.82576 0.88815 0.86283 0.92791 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.97 8.03 127.77 1.03 9.99 16 2 N -0.61 -29.04 2.81 -702.61 -1.97 -31.01 16 3 C -0.25 -13.40 9.59 84.03 0.81 -12.59 16 4 H 0.08 3.82 7.82 -2.91 -0.02 3.80 16 5 C -0.06 -3.26 5.12 84.86 0.43 -2.82 16 6 N -0.94 -55.88 10.64 21.65 0.23 -55.65 16 7 Si 0.97 44.27 29.57 68.60 2.03 46.30 16 8 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 11 C 0.17 6.18 2.55 45.02 0.11 6.29 16 12 C -0.13 -4.69 5.34 30.67 0.16 -4.53 16 13 C 0.12 3.61 6.43 86.37 0.56 4.17 16 14 N -0.60 -14.70 2.97 -818.07 -2.43 -17.13 16 15 C 0.51 13.41 7.77 87.66 0.68 14.10 16 16 O -0.58 -21.65 15.91 16.00 0.25 -21.40 16 17 C 0.05 0.79 4.76 71.24 0.34 1.13 16 18 O -0.39 -8.21 9.86 -129.94 -1.28 -9.49 16 19 C 0.10 1.21 6.11 71.23 0.44 1.64 16 20 C -0.06 -0.97 5.55 -19.67 -0.11 -1.08 16 21 C -0.16 -2.52 9.82 22.36 0.22 -2.30 16 22 C 0.08 1.39 11.18 84.68 0.95 2.34 16 23 N -0.51 -10.29 10.36 -195.84 -2.03 -12.31 16 24 C 0.08 1.33 11.18 84.68 0.95 2.28 16 25 C -0.16 -2.30 9.82 22.36 0.22 -2.08 16 26 C 0.11 1.99 6.37 86.51 0.55 2.54 16 27 C -0.14 -3.64 5.34 30.82 0.16 -3.48 16 28 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 29 H 0.01 0.80 7.22 -2.38 -0.02 0.78 16 30 H 0.03 1.12 6.46 -2.39 -0.02 1.11 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.07 2.33 7.86 -2.39 -0.02 2.31 16 33 H 0.04 1.56 7.72 -2.39 -0.02 1.55 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.29 7.00 -2.39 -0.02 2.28 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.13 16 37 H 0.12 0.99 7.93 -2.38 -0.02 0.97 16 38 H 0.11 1.18 7.70 -2.38 -0.02 1.16 16 39 H 0.09 0.64 8.10 -2.38 -0.02 0.62 16 40 H 0.09 0.71 8.10 -2.39 -0.02 0.69 16 41 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.12 1.14 5.93 -2.39 -0.01 1.13 16 47 H 0.05 1.54 6.72 -2.39 -0.02 1.53 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -79.03 387.52 3.24 -75.79 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.95 Total: 9.31 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.50 Total: 15.60 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -6.20 Total: -116.11 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.03 Total: -30.89 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -79.03 3.24 -75.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277435551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.405 kcal (2) G-P(sol) polarization free energy of solvation -79.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds