Wall clock time and date at job start Tue Mar 31 2020 17:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35738 * 117.00202 * 2 1 4 4 C 1.39288 * 120.84742 * 0.20504 * 3 2 1 5 5 C 1.37956 * 119.09175 * 180.25512 * 4 3 2 6 6 N 1.31972 * 120.82271 * 359.78466 * 5 4 3 7 7 C 1.31943 * 121.86485 * 359.97438 * 6 5 4 8 8 C 1.37991 * 120.82560 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.45702 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47036 * 264.99850 * 9 8 7 11 11 O 1.21284 * 120.00009 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99963 * 180.02562 * 10 9 8 13 13 C 1.46923 * 120.63061 * 354.84172 * 12 10 9 14 14 C 1.53191 * 108.77426 * 126.37296 * 13 12 10 15 15 C 1.53042 * 109.31582 * 54.63578 * 14 13 12 16 16 C 1.53042 * 109.53639 * 298.63575 * 15 14 13 17 17 C 1.46924 * 120.62936 * 174.56506 * 12 10 9 18 18 H 1.09004 * 109.58573 * 113.84142 * 17 12 10 19 19 C 1.52999 * 109.58799 * 353.41671 * 17 12 10 20 20 N 1.46498 * 109.47245 * 73.27806 * 19 17 12 21 21 C 1.36935 * 120.00219 * 174.77745 * 20 19 17 22 22 H 1.07999 * 120.00107 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00030 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47022 * 59.99991 * 25 23 21 27 27 H 1.48500 * 109.47310 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47392 * 300.00426 * 25 23 21 29 29 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46722 * 299.99763 * 1 2 3 31 31 H 1.08999 * 109.47095 * 60.00062 * 1 2 3 32 32 H 1.08002 * 120.45235 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.58371 * 179.76708 * 5 4 3 34 34 H 1.08000 * 119.59030 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47180 * 25.00037 * 9 8 7 36 36 H 1.09001 * 109.47088 * 144.99651 * 9 8 7 37 37 H 1.09005 * 109.58892 * 246.15739 * 13 12 10 38 38 H 1.08995 * 109.58680 * 6.58305 * 13 12 10 39 39 H 1.09002 * 109.49573 * 174.58679 * 14 13 12 40 40 H 1.09001 * 109.49572 * 294.64834 * 14 13 12 41 41 H 1.09000 * 109.45664 * 58.65546 * 15 14 13 42 42 H 1.09005 * 109.46186 * 178.63074 * 15 14 13 43 43 H 1.09001 * 109.49733 * 181.31629 * 16 15 14 44 44 H 1.09005 * 109.50019 * 301.38151 * 16 15 14 45 45 H 1.09000 * 109.47228 * 193.27768 * 19 17 12 46 46 H 1.09000 * 109.47343 * 313.27784 * 19 17 12 47 47 H 0.96999 * 120.00071 * 354.78340 * 20 19 17 48 48 H 0.96999 * 120.00120 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 0.0043 5 6 1.9678 3.5981 -0.0012 6 7 3.2866 3.6457 -0.0062 7 6 4.0231 2.5509 -0.0056 8 6 3.4346 1.3028 0.0008 9 6 4.2839 0.0578 0.0009 10 6 4.4583 -0.4312 -1.4138 11 8 3.9441 0.1720 -2.3318 12 7 5.1858 -1.5390 -1.6589 13 6 5.9074 -2.2162 -0.5730 14 6 5.5006 -3.6930 -0.5566 15 6 5.7374 -4.2988 -1.9419 16 6 4.8722 -3.5709 -2.9734 17 6 5.2673 -2.0958 -3.0161 18 1 6.2879 -2.0045 -3.3879 19 6 4.3121 -1.3376 -3.9399 20 7 4.8596 -0.0088 -4.2241 21 6 4.2290 0.8147 -5.1183 22 1 3.3279 0.4847 -5.6137 23 6 4.7475 2.0739 -5.3871 24 7 5.8455 2.4764 -4.7830 25 14 3.8878 3.1970 -6.6075 26 1 2.5054 3.4706 -6.1394 27 1 4.6355 4.4754 -6.7154 28 1 3.8387 2.5378 -7.9373 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2245 2.3567 0.0081 33 1 1.4009 4.5174 -0.0018 34 1 5.1000 2.6327 -0.0093 35 1 5.2599 0.2838 0.4302 36 1 3.7958 -0.7149 0.5949 37 1 6.9812 -2.1349 -0.7414 38 1 5.6490 -1.7554 0.3804 39 1 6.0994 -4.2271 0.1812 40 1 4.4450 -3.7768 -0.2979 41 1 6.7886 -4.1925 -2.2098 42 1 5.4715 -5.3558 -1.9264 43 1 5.0238 -4.0180 -3.9559 44 1 3.8224 -3.6562 -2.6929 45 1 4.1944 -1.8891 -4.8727 46 1 3.3419 -1.2344 -3.4539 47 1 5.6687 0.2878 -3.7790 48 1 6.2080 3.3562 -4.9712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281868448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:09 Heat of formation + Delta-G solvation = 16.257799 kcal Electronic energy + Delta-G solvation = -30751.281086 eV Core-core repulsion = 26808.676917 eV Total energy + Delta-G solvation = -3942.604170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.64258 -39.78192 -38.00864 -36.84508 -34.60054 -32.95376 -32.38829 -31.76719 -30.97682 -29.70086 -27.99894 -27.32829 -25.83393 -24.25935 -22.83036 -22.70739 -22.42976 -21.01522 -20.39234 -18.57371 -18.11334 -17.04787 -16.92686 -16.22366 -15.69923 -15.65399 -15.04245 -14.79921 -14.64335 -14.42709 -14.28328 -14.10492 -13.74337 -13.63027 -13.39186 -13.10411 -13.01097 -12.79105 -12.64483 -12.20932 -12.13542 -12.04751 -11.65642 -11.51967 -11.42271 -11.02307 -10.96112 -10.85562 -10.64778 -10.61686 -10.52836 -10.25549 -9.80425 -9.40818 -9.23563 -8.90533 -8.58531 -8.56824 -8.20195 -7.90518 -6.39461 -5.44678 -2.63507 1.35274 1.62644 3.21410 3.47952 3.49048 3.61054 3.64422 3.65495 4.10630 4.66047 4.81259 4.81976 4.82732 4.93267 4.95058 4.98877 5.02940 5.11013 5.21066 5.21524 5.30273 5.38483 5.45238 5.47775 5.54376 5.58086 5.69561 5.78935 5.85971 5.88028 5.90991 5.95967 6.02334 6.09046 6.13515 6.15432 6.23280 6.27985 6.41898 6.63524 6.77935 6.80051 7.01987 7.31206 7.37103 7.94668 8.07265 8.31457 8.73686 9.10243 9.85233 10.47003 10.81786 11.79469 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007230 B = 0.006728 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3871.844582 B = 4160.778838 C = 6754.581137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.306 6.306 3 C 0.182 3.818 4 C -0.265 4.265 5 C 0.131 3.869 6 N -0.505 5.505 7 C 0.155 3.845 8 C -0.141 4.141 9 C -0.084 4.084 10 C 0.476 3.524 11 O -0.432 6.432 12 N -0.617 5.617 13 C 0.111 3.889 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.143 3.857 18 H 0.067 0.933 19 C 0.164 3.836 20 N -0.693 5.693 21 C -0.205 4.205 22 H 0.060 0.940 23 C -0.020 4.020 24 N -0.937 5.937 25 Si 0.897 3.103 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.291 1.291 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.013 0.987 46 H 0.032 0.968 47 H 0.380 0.620 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 -11.607 16.188 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.129 3.871 4 C -0.286 4.286 5 C -0.026 4.026 6 N -0.216 5.216 7 C -0.001 4.001 8 C -0.144 4.144 9 C -0.125 4.125 10 C 0.260 3.740 11 O -0.299 6.299 12 N -0.356 5.356 13 C -0.012 4.012 14 C -0.172 4.172 15 C -0.155 4.155 16 C -0.166 4.166 17 C 0.040 3.960 18 H 0.085 0.915 19 C 0.036 3.964 20 N -0.336 5.336 21 C -0.338 4.338 22 H 0.078 0.922 23 C -0.214 4.214 24 N -0.587 5.587 25 Si 0.730 3.270 26 H -0.219 1.219 27 H -0.220 1.220 28 H -0.218 1.218 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.175 0.825 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.030 0.970 46 H 0.050 0.950 47 H 0.213 0.787 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.263 -10.568 15.523 19.503 hybrid contribution -0.922 0.040 -0.514 1.056 sum -6.185 -10.528 15.010 19.349 Atomic orbital electron populations 1.23066 0.78325 1.03918 1.01412 1.86043 1.21402 1.26492 1.87777 1.19021 0.91798 0.84391 0.91906 1.22082 1.01052 0.93341 1.12095 1.22453 0.90465 0.96714 0.92930 1.67690 1.06964 1.32070 1.14895 1.22467 1.00151 0.86129 0.91375 1.19717 0.90682 0.96511 1.07474 1.20423 0.99835 0.95313 0.96933 1.20374 0.82062 0.80917 0.90633 1.91252 1.43251 1.53215 1.42155 1.47907 1.51336 1.28082 1.08264 1.21586 0.96455 0.92406 0.90796 1.21915 1.01894 0.95941 0.97488 1.21490 1.00216 0.98941 0.94818 1.21836 1.00093 0.95344 0.99311 1.21334 1.00457 0.91935 0.82260 0.91548 1.20794 0.95314 0.86980 0.93265 1.42139 1.29905 1.11982 1.49582 1.19055 1.05341 0.95551 1.13817 0.92179 1.24545 0.98335 0.97525 1.01018 1.69628 1.22696 1.19700 1.46725 0.86388 0.78707 0.80679 0.81219 1.21924 1.21972 1.21803 0.88253 0.92764 0.92335 0.84856 0.83008 0.82451 0.88971 0.88841 0.91945 0.90293 0.91367 0.91696 0.91902 0.92186 0.91025 0.91764 0.96965 0.95004 0.78656 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.84 101.05 0.99 1.28 16 2 O -0.31 -4.51 9.77 -18.92 -0.18 -4.70 16 3 C 0.18 2.96 6.70 -38.82 -0.26 2.70 16 4 C -0.26 -3.91 9.11 -39.29 -0.36 -4.27 16 5 C 0.13 2.06 11.17 -17.59 -0.20 1.86 16 6 N -0.50 -9.22 10.36 -13.33 -0.14 -9.36 16 7 C 0.15 2.74 10.83 -17.59 -0.19 2.55 16 8 C -0.14 -2.38 4.40 -104.34 -0.46 -2.83 16 9 C -0.08 -1.24 3.95 -29.04 -0.11 -1.35 16 10 C 0.48 8.87 7.31 -10.99 -0.08 8.79 16 11 O -0.43 -10.45 9.76 5.55 0.05 -10.39 16 12 N -0.62 -9.82 2.98 -165.48 -0.49 -10.31 16 13 C 0.11 1.26 6.35 -3.71 -0.02 1.24 16 14 C -0.13 -1.28 6.08 -26.61 -0.16 -1.45 16 15 C -0.12 -1.21 5.89 -26.69 -0.16 -1.37 16 16 C -0.13 -1.68 5.31 -26.83 -0.14 -1.82 16 17 C 0.14 2.47 2.89 -67.82 -0.20 2.27 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.65 4.89 -4.04 -0.02 3.63 16 20 N -0.69 -18.96 3.20 -59.91 -0.19 -19.15 16 21 C -0.21 -6.27 9.73 -15.06 -0.15 -6.42 16 22 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 24 N -0.94 -30.41 13.06 55.49 0.72 -29.68 16 25 Si 0.90 24.56 29.55 -169.99 -5.02 19.53 16 26 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 27 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 31 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 32 H 0.13 1.54 6.47 -52.49 -0.34 1.20 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.16 2.57 8.06 -52.49 -0.42 2.14 16 35 H 0.09 1.13 7.65 -51.93 -0.40 0.73 16 36 H 0.09 1.19 7.54 -51.93 -0.39 0.80 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.01 0.28 8.08 -51.93 -0.42 -0.14 16 46 H 0.03 0.78 6.36 -51.93 -0.33 0.45 16 47 H 0.38 11.07 7.23 -40.82 -0.30 10.77 16 48 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -38.09 380.18 -8.61 -46.70 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.48 Total: 7.53 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.61 Total: 4.10 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -0.10 Total: -68.50 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.13 Total: -15.09 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.02 Total: 19.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.09 -8.61 -46.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281868448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.960 kcal (2) G-P(sol) polarization free energy of solvation -38.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds