Wall clock time and date at job start Tue Mar 31 2020 17:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35738 * 117.00202 * 2 1 4 4 C 1.39288 * 120.84742 * 0.20504 * 3 2 1 5 5 C 1.37956 * 119.09175 * 180.25512 * 4 3 2 6 6 N 1.31972 * 120.82271 * 359.78466 * 5 4 3 7 7 C 1.31943 * 121.86485 * 359.97438 * 6 5 4 8 8 C 1.37991 * 120.82560 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.45702 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47036 * 264.99850 * 9 8 7 11 11 O 1.21284 * 120.00009 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99963 * 180.02562 * 10 9 8 13 13 C 1.46923 * 120.63061 * 354.84172 * 12 10 9 14 14 C 1.53191 * 108.77426 * 126.37296 * 13 12 10 15 15 C 1.53042 * 109.31582 * 54.63578 * 14 13 12 16 16 C 1.53042 * 109.53639 * 298.63575 * 15 14 13 17 17 C 1.46924 * 120.62936 * 174.56506 * 12 10 9 18 18 H 1.09004 * 109.58573 * 113.84142 * 17 12 10 19 19 C 1.52999 * 109.58799 * 353.41671 * 17 12 10 20 20 N 1.46498 * 109.47245 * 73.27806 * 19 17 12 21 21 C 1.36935 * 120.00219 * 174.77745 * 20 19 17 22 22 H 1.07999 * 120.00107 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00030 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47022 * 59.99991 * 25 23 21 27 27 H 1.48500 * 109.47310 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47392 * 300.00426 * 25 23 21 29 29 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46722 * 299.99763 * 1 2 3 31 31 H 1.08999 * 109.47095 * 60.00062 * 1 2 3 32 32 H 1.08002 * 120.45235 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.58371 * 179.76708 * 5 4 3 34 34 H 1.08000 * 119.59030 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47180 * 25.00037 * 9 8 7 36 36 H 1.09001 * 109.47088 * 144.99651 * 9 8 7 37 37 H 1.09005 * 109.58892 * 246.15739 * 13 12 10 38 38 H 1.08995 * 109.58680 * 6.58305 * 13 12 10 39 39 H 1.09002 * 109.49573 * 174.58679 * 14 13 12 40 40 H 1.09001 * 109.49572 * 294.64834 * 14 13 12 41 41 H 1.09000 * 109.45664 * 58.65546 * 15 14 13 42 42 H 1.09005 * 109.46186 * 178.63074 * 15 14 13 43 43 H 1.09001 * 109.49733 * 181.31629 * 16 15 14 44 44 H 1.09005 * 109.50019 * 301.38151 * 16 15 14 45 45 H 1.09000 * 109.47228 * 193.27768 * 19 17 12 46 46 H 1.09000 * 109.47343 * 313.27784 * 19 17 12 47 47 H 0.96999 * 120.00071 * 354.78340 * 20 19 17 48 48 H 0.96999 * 120.00120 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 0.0043 5 6 1.9678 3.5981 -0.0012 6 7 3.2866 3.6457 -0.0062 7 6 4.0231 2.5509 -0.0056 8 6 3.4346 1.3028 0.0008 9 6 4.2839 0.0578 0.0009 10 6 4.4583 -0.4312 -1.4138 11 8 3.9441 0.1720 -2.3318 12 7 5.1858 -1.5390 -1.6589 13 6 5.9074 -2.2162 -0.5730 14 6 5.5006 -3.6930 -0.5566 15 6 5.7374 -4.2988 -1.9419 16 6 4.8722 -3.5709 -2.9734 17 6 5.2673 -2.0958 -3.0161 18 1 6.2879 -2.0045 -3.3879 19 6 4.3121 -1.3376 -3.9399 20 7 4.8596 -0.0088 -4.2241 21 6 4.2290 0.8147 -5.1183 22 1 3.3279 0.4847 -5.6137 23 6 4.7475 2.0739 -5.3871 24 7 5.8455 2.4764 -4.7830 25 14 3.8878 3.1970 -6.6075 26 1 2.5054 3.4706 -6.1394 27 1 4.6355 4.4754 -6.7154 28 1 3.8387 2.5378 -7.9373 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2245 2.3567 0.0081 33 1 1.4009 4.5174 -0.0018 34 1 5.1000 2.6327 -0.0093 35 1 5.2599 0.2838 0.4302 36 1 3.7958 -0.7149 0.5949 37 1 6.9812 -2.1349 -0.7414 38 1 5.6490 -1.7554 0.3804 39 1 6.0994 -4.2271 0.1812 40 1 4.4450 -3.7768 -0.2979 41 1 6.7886 -4.1925 -2.2098 42 1 5.4715 -5.3558 -1.9264 43 1 5.0238 -4.0180 -3.9559 44 1 3.8224 -3.6562 -2.6929 45 1 4.1944 -1.8891 -4.8727 46 1 3.3419 -1.2344 -3.4539 47 1 5.6687 0.2878 -3.7790 48 1 6.2080 3.3562 -4.9712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281868448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:08 Heat of formation + Delta-G solvation = -10.062653 kcal Electronic energy + Delta-G solvation = -30752.422427 eV Core-core repulsion = 26808.676917 eV Total energy + Delta-G solvation = -3943.745510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86395 -41.06979 -39.13465 -38.10378 -36.44434 -34.47087 -33.55011 -33.41262 -32.16623 -31.47521 -29.09872 -28.35815 -27.45971 -25.70612 -24.29543 -23.92144 -23.88375 -22.46696 -21.45563 -19.91426 -19.27845 -19.01896 -18.13959 -17.64521 -16.97168 -16.72560 -16.66665 -16.20024 -15.94012 -15.76539 -15.39310 -15.27033 -15.17366 -14.93761 -14.80797 -14.69769 -14.36353 -14.03034 -13.97132 -13.73790 -13.47496 -13.16575 -13.07392 -12.82072 -12.70329 -12.67373 -12.47241 -12.18284 -12.11757 -12.00536 -11.83935 -11.68456 -11.43619 -11.30447 -10.83033 -10.49958 -10.14844 -9.90305 -9.58324 -9.29667 -8.59431 -7.82281 -4.99123 0.12545 0.39727 1.38374 1.43094 1.48372 2.09934 2.19523 2.24636 2.60452 2.87414 3.49672 3.51970 3.68928 3.76232 3.85302 3.90151 3.95336 4.04753 4.16139 4.20835 4.25538 4.33020 4.34527 4.39901 4.44568 4.46919 4.54209 4.62528 4.65928 4.68946 4.77840 4.84745 4.89262 4.97431 5.04234 5.09021 5.10290 5.17639 5.18971 5.28624 5.35023 5.50066 5.56613 5.60231 5.93299 6.23058 6.38237 6.77459 7.06750 7.45065 7.72029 8.27850 8.50773 9.42084 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007230 B = 0.006728 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3871.844582 B = 4160.778838 C = 6754.581137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.320 6.320 3 C 0.171 3.829 4 C -0.264 4.264 5 C 0.118 3.882 6 N -0.537 5.537 7 C 0.130 3.870 8 C -0.156 4.156 9 C -0.073 4.073 10 C 0.472 3.528 11 O -0.500 6.500 12 N -0.615 5.615 13 C 0.102 3.898 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.149 3.851 18 H 0.055 0.945 19 C 0.169 3.831 20 N -0.697 5.697 21 C -0.208 4.208 22 H 0.055 0.945 23 C -0.081 4.081 24 N -0.968 5.968 25 Si 0.959 3.041 26 H -0.293 1.293 27 H -0.295 1.295 28 H -0.277 1.277 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.166 0.834 33 H 0.181 0.819 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.009 0.991 46 H 0.013 0.987 47 H 0.367 0.633 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -13.774 17.790 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.231 6.231 3 C 0.117 3.883 4 C -0.284 4.284 5 C -0.039 4.039 6 N -0.249 5.249 7 C -0.025 4.025 8 C -0.159 4.159 9 C -0.114 4.114 10 C 0.259 3.741 11 O -0.372 6.372 12 N -0.352 5.352 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.150 4.150 16 C -0.157 4.157 17 C 0.045 3.955 18 H 0.073 0.927 19 C 0.042 3.958 20 N -0.337 5.337 21 C -0.341 4.341 22 H 0.073 0.927 23 C -0.273 4.273 24 N -0.621 5.621 25 Si 0.790 3.210 26 H -0.220 1.220 27 H -0.221 1.221 28 H -0.203 1.203 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.183 0.817 33 H 0.198 0.802 34 H 0.175 0.825 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.027 0.973 46 H 0.030 0.970 47 H 0.199 0.801 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.031 -12.825 17.153 22.251 hybrid contribution -0.774 0.608 -0.957 1.373 sum -6.805 -12.217 16.196 21.398 Atomic orbital electron populations 1.23394 0.76094 1.05847 1.02260 1.86016 1.23729 1.25844 1.87516 1.19252 0.92008 0.85423 0.91596 1.22433 1.02672 0.92562 1.10752 1.23002 0.89966 0.98437 0.92463 1.67654 1.08410 1.32697 1.16162 1.22608 1.00475 0.86837 0.92564 1.19929 0.91673 0.96800 1.07501 1.20408 1.01195 0.95101 0.94647 1.21075 0.80715 0.80724 0.91597 1.91215 1.46423 1.55200 1.44406 1.48042 1.50758 1.27525 1.08850 1.21974 0.96389 0.93631 0.90012 1.21896 1.02423 0.94434 0.97749 1.21494 0.99627 0.99784 0.94132 1.21772 1.00481 0.92474 1.01004 1.21164 0.98278 0.93834 0.82237 0.92714 1.20811 0.95683 0.85258 0.94052 1.42193 1.29280 1.13381 1.48862 1.19365 1.04862 0.96215 1.13643 0.92654 1.25264 0.99468 0.99044 1.03483 1.69794 1.24200 1.19638 1.48512 0.85401 0.77302 0.78671 0.79641 1.21996 1.22108 1.20283 0.85927 0.90291 0.92996 0.81697 0.80191 0.82493 0.86437 0.86349 0.91167 0.88057 0.88125 0.91826 0.91546 0.89881 0.90540 0.92200 0.97338 0.96952 0.80104 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.84 113.37 1.12 1.45 16 2 O -0.32 -9.05 9.77 -90.61 -0.89 -9.93 16 3 C 0.17 5.48 6.70 22.77 0.15 5.63 16 4 C -0.26 -7.57 9.11 22.46 0.20 -7.36 16 5 C 0.12 3.67 11.17 84.60 0.95 4.62 16 6 N -0.54 -20.15 10.36 -196.09 -2.03 -22.18 16 7 C 0.13 4.80 10.83 84.62 0.92 5.71 16 8 C -0.16 -5.30 4.40 -19.68 -0.09 -5.38 16 9 C -0.07 -2.09 3.95 29.10 0.12 -1.97 16 10 C 0.47 17.68 7.31 87.66 0.64 18.32 16 11 O -0.50 -25.08 9.76 -3.04 -0.03 -25.11 16 12 N -0.61 -19.01 2.98 -795.84 -2.37 -21.38 16 13 C 0.10 2.00 6.35 86.36 0.55 2.55 16 14 C -0.13 -1.91 6.08 30.67 0.19 -1.73 16 15 C -0.11 -1.95 5.89 30.62 0.18 -1.77 16 16 C -0.12 -2.94 5.31 30.53 0.16 -2.78 16 17 C 0.15 5.09 2.89 44.83 0.13 5.22 16 18 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 19 C 0.17 7.74 4.89 86.38 0.42 8.16 16 20 N -0.70 -39.58 3.20 -343.46 -1.10 -40.67 16 21 C -0.21 -13.08 9.73 84.03 0.82 -12.27 16 22 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 23 C -0.08 -5.21 5.50 84.86 0.47 -4.74 16 24 N -0.97 -64.93 13.06 21.65 0.28 -64.65 16 25 Si 0.96 51.78 29.55 68.60 2.03 53.81 16 26 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 27 H -0.29 -15.85 7.11 99.48 0.71 -15.14 16 28 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 29 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.07 7.70 -2.39 -0.02 1.05 16 31 H 0.05 1.03 7.72 -2.39 -0.02 1.01 16 32 H 0.17 3.47 6.47 -2.91 -0.02 3.45 16 33 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.16 5.44 8.06 -2.91 -0.02 5.42 16 35 H 0.12 2.69 7.65 -2.39 -0.02 2.68 16 36 H 0.12 2.74 7.54 -2.39 -0.02 2.72 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.10 1.56 5.93 -2.39 -0.01 1.54 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 46 H 0.01 0.64 6.36 -2.39 -0.02 0.63 16 47 H 0.37 22.35 7.23 -92.71 -0.67 21.68 16 48 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -87.27 380.18 3.11 -84.16 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.29 Total: 32.29 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.92 Total: 13.67 kcal Atomic # 7 Polarization: -143.68 SS G_CDS: -5.22 Total: -148.89 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.92 Total: -35.04 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.03 Total: 53.81 kcal Total: -87.27 3.11 -84.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281868448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.097 kcal (2) G-P(sol) polarization free energy of solvation -87.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds