Wall clock time and date at job start Tue Mar 31 2020 17:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46825 * 89.99956 * 7 6 5 9 9 C 1.50694 * 109.46827 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00014 * 179.97438 * 11 9 8 13 13 C 1.53780 * 113.61717 * 254.13819 * 12 11 9 14 14 C 1.54051 * 86.98467 * 270.83709 * 13 12 11 15 15 C 1.53001 * 113.61995 * 220.02108 * 14 13 12 16 16 N 1.46498 * 109.46872 * 272.49584 * 15 14 13 17 17 C 1.36943 * 119.99843 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99467 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99879 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99635 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47235 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47116 * 120.00324 * 21 19 17 24 24 H 1.48501 * 109.46697 * 240.00029 * 21 19 17 25 25 C 1.53782 * 113.61719 * 156.52509 * 12 11 9 26 26 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 27 27 N 1.31967 * 120.83264 * 0.02562 * 26 6 5 28 28 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 29 29 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 31 31 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 32 32 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 34 34 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 35 35 H 1.08997 * 109.46997 * 299.99780 * 8 7 6 36 36 H 1.08996 * 109.46830 * 60.00318 * 8 7 6 37 37 H 0.96995 * 120.00319 * 359.97438 * 11 9 8 38 38 H 1.09009 * 112.84876 * 25.33442 * 12 11 9 39 39 H 1.08999 * 113.61500 * 25.43140 * 13 12 11 40 40 H 1.09007 * 113.61576 * 156.33538 * 13 12 11 41 41 H 1.08998 * 113.69005 * 89.12209 * 14 13 12 42 42 H 1.08997 * 109.47050 * 32.49733 * 15 14 13 43 43 H 1.08999 * 109.47091 * 152.49323 * 15 14 13 44 44 H 0.97003 * 120.00129 * 359.97438 * 16 15 14 45 45 H 0.97007 * 119.99640 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.62095 * 203.66736 * 25 12 11 47 47 H 1.09006 * 113.60992 * 334.57602 * 25 12 11 48 48 H 1.07994 * 119.58392 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 6 4.0883 5.4839 -1.4410 9 6 4.7141 6.8547 -1.4410 10 8 4.9657 7.4066 -0.3907 11 7 4.9931 7.4681 -2.6082 12 6 5.6009 8.8011 -2.6082 13 6 4.6231 9.9240 -2.9927 14 6 5.0401 9.6755 -4.4547 15 6 5.1998 10.9584 -5.2731 16 7 3.9073 11.3316 -5.8532 17 6 3.8046 12.4536 -6.6316 18 1 4.6764 13.0635 -6.8174 19 6 2.5801 12.8069 -7.1817 20 7 1.5177 12.0638 -6.9547 21 14 2.4398 14.3378 -8.2428 22 1 3.7679 14.9947 -8.3420 23 1 1.9721 13.9581 -9.6001 24 1 1.4677 15.2779 -7.6293 25 6 6.3666 9.1290 -3.9009 26 6 1.8772 3.5097 0.0021 27 7 1.3187 2.3141 0.0026 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0229 0.3694 -0.0035 32 1 5.1255 2.5946 0.0011 33 1 3.2187 5.7201 0.5158 34 1 4.8376 4.9803 0.5150 35 1 4.7466 4.7836 -1.9551 36 1 3.1276 5.5234 -1.9543 37 1 4.7915 7.0270 -3.4482 38 1 6.1681 9.0077 -1.7005 39 1 3.5799 9.6837 -2.7878 40 1 4.9145 10.9046 -2.6162 41 1 4.4352 8.9231 -4.9608 42 1 5.5527 11.7609 -4.6255 43 1 5.9223 10.7920 -6.0722 44 1 3.1245 10.7835 -5.6866 45 1 0.6621 12.3106 -7.3394 46 1 7.1338 9.8926 -3.7724 47 1 6.7298 8.2472 -4.4288 48 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282028651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:59 Heat of formation + Delta-G solvation = -16.895571 kcal Electronic energy + Delta-G solvation = -26819.480179 eV Core-core repulsion = 22875.438371 eV Total energy + Delta-G solvation = -3944.041808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04974 -40.23459 -38.64838 -38.19317 -34.60661 -34.42322 -33.14980 -32.56822 -30.91228 -30.00265 -27.73187 -26.84071 -25.51199 -25.10299 -23.83660 -23.30987 -22.06689 -21.39500 -20.56910 -19.07980 -18.77799 -17.52659 -17.41720 -17.00963 -16.36744 -15.97442 -15.68986 -15.39278 -14.90892 -14.88002 -14.66998 -14.46171 -14.15365 -13.88834 -13.68559 -13.50464 -13.40066 -13.21641 -12.75089 -12.62018 -12.36942 -12.32704 -12.14045 -11.93038 -11.63950 -11.46152 -11.39535 -11.03896 -10.84707 -10.49104 -10.33903 -10.27580 -10.07884 -10.00797 -9.92107 -9.82214 -9.61105 -9.01572 -8.84579 -8.74884 -6.89933 -5.76039 -3.04099 0.75269 0.86704 2.52906 2.71958 3.03841 3.38894 3.43406 3.49008 3.51307 3.94136 4.31888 4.51298 4.57043 4.58147 4.61279 4.67795 4.77848 4.81273 4.87973 4.92344 4.94679 4.98569 5.11021 5.13980 5.24011 5.25715 5.29776 5.50316 5.58001 5.58618 5.73026 5.78659 5.86066 5.93165 5.96654 6.01162 6.06410 6.10822 6.23939 6.31498 6.42306 6.63227 6.78437 6.83931 6.93771 7.42817 7.46749 7.71018 8.13801 8.43298 9.54349 10.13589 10.47932 11.47036 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.001703 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.465065 B =16437.241174 C =17818.621038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.313 3.687 4 C -0.188 4.188 5 C -0.037 4.037 6 C -0.171 4.171 7 C -0.054 4.054 8 C -0.137 4.137 9 C 0.514 3.486 10 O -0.543 6.543 11 N -0.710 5.710 12 C 0.115 3.885 13 C -0.138 4.138 14 C -0.113 4.113 15 C 0.162 3.838 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.138 4.138 26 C 0.145 3.855 27 N -0.538 5.538 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.402 0.598 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -24.502 15.416 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.134 3.866 4 C -0.209 4.209 5 C -0.062 4.062 6 C -0.173 4.173 7 C -0.093 4.093 8 C -0.177 4.177 9 C 0.301 3.699 10 O -0.420 6.420 11 N -0.361 5.361 12 C 0.010 3.990 13 C -0.177 4.177 14 C -0.132 4.132 15 C 0.034 3.966 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.177 4.177 26 C -0.011 4.011 27 N -0.261 5.261 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.236 0.764 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.216 0.784 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.611 -24.311 16.090 29.515 hybrid contribution 0.001 0.642 -1.140 1.309 sum 4.612 -23.669 14.950 28.372 Atomic orbital electron populations 1.22866 0.77088 1.02964 1.02588 1.86230 1.23046 1.24634 1.87849 1.19885 0.89481 0.84753 0.92445 1.21074 0.92008 0.99589 1.08198 1.21362 1.00606 0.90710 0.93567 1.20760 0.94761 0.96432 1.05340 1.20172 1.02094 0.91533 0.95476 1.21692 1.02750 0.94102 0.99172 1.20638 0.78073 0.87492 0.83691 1.90706 1.52979 1.67028 1.31260 1.45737 1.63274 1.18420 1.08634 1.21936 0.95618 0.82186 0.99262 1.23450 0.99652 0.98363 0.96237 1.22804 0.95969 0.98969 0.95425 1.20641 0.89755 0.92207 0.93966 1.42355 1.05670 1.30011 1.59546 1.19302 0.94449 1.01170 1.22029 0.91171 1.24742 0.95742 0.99236 1.01432 1.69671 0.99527 1.39729 1.49365 0.86118 0.77379 0.82728 0.79993 1.20562 1.21904 1.21890 1.23305 0.97621 1.01179 0.95553 1.22385 0.92329 0.93636 0.92720 1.67345 1.40922 0.98810 1.19013 0.92190 0.88628 0.92265 0.84117 0.84010 0.89724 0.89921 0.88782 0.88531 0.76384 0.88440 0.91347 0.89184 0.89454 0.96215 0.96434 0.78352 0.93615 0.88755 0.91304 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.87 10.48 -18.72 -0.20 -3.07 16 3 C 0.31 3.01 7.49 -17.12 -0.13 2.88 16 4 C -0.19 -1.45 10.04 -39.27 -0.39 -1.85 16 5 C -0.04 -0.25 9.85 -39.31 -0.39 -0.64 16 6 C -0.17 -1.26 5.15 -104.47 -0.54 -1.80 16 7 C -0.05 -0.40 4.66 -27.88 -0.13 -0.53 16 8 C -0.14 -0.99 5.68 -27.88 -0.16 -1.15 16 9 C 0.51 5.61 7.83 -10.99 -0.09 5.52 16 10 O -0.54 -7.98 15.60 5.56 0.09 -7.90 16 11 N -0.71 -7.36 5.26 -53.02 -0.28 -7.64 16 12 C 0.12 1.40 4.29 -67.12 -0.29 1.11 16 13 C -0.14 -2.02 7.45 -25.78 -0.19 -2.21 16 14 C -0.11 -1.70 3.65 -89.66 -0.33 -2.03 16 15 C 0.16 3.19 6.10 -4.04 -0.02 3.17 16 16 N -0.73 -18.54 5.60 -59.91 -0.34 -18.87 16 17 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C -0.14 -1.61 7.38 -25.91 -0.19 -1.80 16 26 C 0.14 1.22 10.85 -17.56 -0.19 1.03 16 27 N -0.54 -5.37 9.22 -13.33 -0.12 -5.49 16 28 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 33 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 3.34 8.70 -40.82 -0.36 2.99 16 38 H 0.10 1.26 7.50 -51.92 -0.39 0.87 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 403.72 15.07 6.08 6.08 Total: -1.00 -34.81 403.72 -9.04 -43.85 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.75 Total: 7.61 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.23 Total: -4.41 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.01 Total: -59.67 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.11 Total: -10.96 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.81 -9.04 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282028651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds