Wall clock time and date at job start Tue Mar 31 2020 17:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46825 * 89.99956 * 7 6 5 9 9 C 1.50694 * 109.46827 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00014 * 179.97438 * 11 9 8 13 13 C 1.53780 * 113.61717 * 254.13819 * 12 11 9 14 14 C 1.54051 * 86.98467 * 270.83709 * 13 12 11 15 15 C 1.53001 * 113.61995 * 220.02108 * 14 13 12 16 16 N 1.46498 * 109.46872 * 272.49584 * 15 14 13 17 17 C 1.36943 * 119.99843 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99467 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99879 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99635 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47235 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47116 * 120.00324 * 21 19 17 24 24 H 1.48501 * 109.46697 * 240.00029 * 21 19 17 25 25 C 1.53782 * 113.61719 * 156.52509 * 12 11 9 26 26 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 27 27 N 1.31967 * 120.83264 * 0.02562 * 26 6 5 28 28 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 29 29 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 31 31 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 32 32 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 34 34 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 35 35 H 1.08997 * 109.46997 * 299.99780 * 8 7 6 36 36 H 1.08996 * 109.46830 * 60.00318 * 8 7 6 37 37 H 0.96995 * 120.00319 * 359.97438 * 11 9 8 38 38 H 1.09009 * 112.84876 * 25.33442 * 12 11 9 39 39 H 1.08999 * 113.61500 * 25.43140 * 13 12 11 40 40 H 1.09007 * 113.61576 * 156.33538 * 13 12 11 41 41 H 1.08998 * 113.69005 * 89.12209 * 14 13 12 42 42 H 1.08997 * 109.47050 * 32.49733 * 15 14 13 43 43 H 1.08999 * 109.47091 * 152.49323 * 15 14 13 44 44 H 0.97003 * 120.00129 * 359.97438 * 16 15 14 45 45 H 0.97007 * 119.99640 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.62095 * 203.66736 * 25 12 11 47 47 H 1.09006 * 113.60992 * 334.57602 * 25 12 11 48 48 H 1.07994 * 119.58392 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 6 4.0883 5.4839 -1.4410 9 6 4.7141 6.8547 -1.4410 10 8 4.9657 7.4066 -0.3907 11 7 4.9931 7.4681 -2.6082 12 6 5.6009 8.8011 -2.6082 13 6 4.6231 9.9240 -2.9927 14 6 5.0401 9.6755 -4.4547 15 6 5.1998 10.9584 -5.2731 16 7 3.9073 11.3316 -5.8532 17 6 3.8046 12.4536 -6.6316 18 1 4.6764 13.0635 -6.8174 19 6 2.5801 12.8069 -7.1817 20 7 1.5177 12.0638 -6.9547 21 14 2.4398 14.3378 -8.2428 22 1 3.7679 14.9947 -8.3420 23 1 1.9721 13.9581 -9.6001 24 1 1.4677 15.2779 -7.6293 25 6 6.3666 9.1290 -3.9009 26 6 1.8772 3.5097 0.0021 27 7 1.3187 2.3141 0.0026 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0229 0.3694 -0.0035 32 1 5.1255 2.5946 0.0011 33 1 3.2187 5.7201 0.5158 34 1 4.8376 4.9803 0.5150 35 1 4.7466 4.7836 -1.9551 36 1 3.1276 5.5234 -1.9543 37 1 4.7915 7.0270 -3.4482 38 1 6.1681 9.0077 -1.7005 39 1 3.5799 9.6837 -2.7878 40 1 4.9145 10.9046 -2.6162 41 1 4.4352 8.9231 -4.9608 42 1 5.5527 11.7609 -4.6255 43 1 5.9223 10.7920 -6.0722 44 1 3.1245 10.7835 -5.6866 45 1 0.6621 12.3106 -7.3394 46 1 7.1338 9.8926 -3.7724 47 1 6.7298 8.2472 -4.4288 48 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282028651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:59 Heat of formation + Delta-G solvation = -41.544346 kcal Electronic energy + Delta-G solvation = -26820.549030 eV Core-core repulsion = 22875.438371 eV Total energy + Delta-G solvation = -3945.110659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66534 -41.19030 -39.57047 -38.94393 -36.33968 -35.13278 -34.36365 -33.17568 -32.75756 -30.69960 -28.59817 -28.12220 -26.60524 -25.97246 -25.00612 -24.37424 -23.04595 -22.57399 -21.36483 -20.26437 -19.36842 -19.05813 -18.19778 -18.12459 -17.03014 -16.94082 -16.68200 -16.46319 -16.07831 -15.74679 -15.64619 -15.42776 -15.24710 -15.10456 -14.79911 -14.56465 -14.36310 -14.07488 -13.95177 -13.69107 -13.34007 -13.15806 -13.10265 -12.90992 -12.88536 -12.68685 -12.52703 -12.12470 -12.05710 -11.98703 -11.92832 -11.72530 -11.33666 -11.13092 -10.94153 -10.85704 -10.77037 -10.58713 -9.97290 -9.36069 -8.97614 -7.95517 -5.23543 0.15180 0.29531 1.46958 1.47744 1.57909 1.68044 2.16169 2.23064 2.55921 2.77044 3.36181 3.37787 3.61704 3.62196 3.68260 3.94504 3.96132 3.98949 3.99474 4.06070 4.22235 4.32172 4.34867 4.39827 4.41589 4.45926 4.59277 4.70280 4.74384 4.76397 4.80105 4.87175 4.94360 4.95261 4.95864 5.00605 5.02478 5.17869 5.21314 5.30169 5.39460 5.40493 5.50051 5.52204 5.72901 6.23712 6.27706 6.61526 6.85299 7.31249 7.33575 8.11870 8.34017 9.28296 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.001703 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.465065 B =16437.241174 C =17818.621038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.290 3.710 4 C -0.191 4.191 5 C -0.032 4.032 6 C -0.165 4.165 7 C -0.047 4.047 8 C -0.128 4.128 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.704 5.704 12 C 0.127 3.873 13 C -0.144 4.144 14 C -0.111 4.111 15 C 0.159 3.841 16 N -0.745 5.745 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.294 1.294 25 C -0.116 4.116 26 C 0.130 3.870 27 N -0.560 5.560 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.053 0.947 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.414 0.586 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.019 0.981 43 H 0.021 0.979 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 -25.422 15.050 30.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.211 4.211 5 C -0.057 4.057 6 C -0.168 4.168 7 C -0.086 4.086 8 C -0.168 4.168 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.355 5.355 12 C 0.021 3.979 13 C -0.183 4.183 14 C -0.130 4.130 15 C 0.032 3.968 16 N -0.387 5.387 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.190 1.190 23 H -0.219 1.219 24 H -0.222 1.222 25 C -0.155 4.155 26 C -0.025 4.025 27 N -0.283 5.283 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.072 0.928 31 H 0.176 0.824 32 H 0.188 0.812 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.251 0.749 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.122 0.878 47 H 0.111 0.889 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.438 -25.245 15.711 30.424 hybrid contribution -0.529 0.934 -0.983 1.455 sum 5.909 -24.312 14.728 29.033 Atomic orbital electron populations 1.22997 0.76170 1.04467 1.02006 1.86210 1.24089 1.24779 1.88008 1.20245 0.90419 0.84781 0.93388 1.21355 0.91429 1.00761 1.07572 1.21686 1.01918 0.89906 0.92214 1.20741 0.94368 0.96630 1.05014 1.20076 1.01750 0.91201 0.95571 1.21697 1.03478 0.92184 0.99403 1.21263 0.77205 0.88444 0.82965 1.90694 1.54737 1.68281 1.32692 1.45711 1.62811 1.17679 1.09337 1.21712 0.94577 0.82221 0.99375 1.23462 0.99309 0.99250 0.96286 1.22731 0.98680 0.96933 0.94621 1.20842 0.87321 0.94327 0.94271 1.42588 1.07323 1.29280 1.59543 1.19716 0.94570 1.01812 1.21605 0.90696 1.25573 0.95595 1.02458 1.03372 1.69823 0.99847 1.41567 1.50862 0.85071 0.77695 0.79102 0.77896 1.18997 1.21934 1.22168 1.23212 0.95878 1.02030 0.94353 1.22630 0.93185 0.93560 0.93094 1.67313 1.41763 0.99400 1.19851 0.92815 0.86109 0.92775 0.82431 0.81250 0.90933 0.89916 0.86126 0.87431 0.74925 0.88930 0.93115 0.90010 0.89564 0.96325 0.96061 0.79547 0.94057 0.87816 0.88876 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.68 16 2 O -0.32 -5.90 10.48 -89.90 -0.94 -6.84 16 3 C 0.29 5.46 7.49 84.79 0.63 6.09 16 4 C -0.19 -2.65 10.04 22.47 0.23 -2.42 16 5 C -0.03 -0.36 9.85 22.45 0.22 -0.14 16 6 C -0.17 -2.19 5.15 -19.77 -0.10 -2.29 16 7 C -0.05 -0.63 4.66 29.85 0.14 -0.49 16 8 C -0.13 -1.55 5.68 29.85 0.17 -1.38 16 9 C 0.51 10.33 7.83 87.65 0.69 11.01 16 10 O -0.58 -16.74 15.60 -3.03 -0.05 -16.79 16 11 N -0.70 -13.18 5.26 -440.03 -2.32 -15.49 16 12 C 0.13 2.87 4.29 45.52 0.20 3.07 16 13 C -0.14 -4.16 7.45 31.21 0.23 -3.93 16 14 C -0.11 -3.22 3.65 -10.17 -0.04 -3.25 16 15 C 0.16 6.13 6.10 86.38 0.53 6.66 16 16 N -0.74 -37.89 5.60 -343.45 -1.92 -39.81 16 17 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 20 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 21 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 C -0.12 -2.39 7.38 31.12 0.23 -2.16 16 26 C 0.13 2.13 10.85 84.63 0.92 3.04 16 27 N -0.56 -11.13 9.22 -308.95 -2.85 -13.98 16 28 H 0.05 0.76 8.11 -2.38 -0.02 0.74 16 29 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 33 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 34 H 0.08 1.12 8.05 -2.39 -0.02 1.11 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.41 5.77 8.70 -92.71 -0.81 4.97 16 38 H 0.09 2.27 7.50 -2.38 -0.02 2.25 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 2.47 7.90 -2.38 -0.02 2.45 16 41 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 42 H 0.02 0.74 7.85 -2.39 -0.02 0.72 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.37 20.17 7.67 -92.71 -0.71 19.46 16 45 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 46 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 47 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -75.74 403.72 0.21 -75.53 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.55 Total: 29.96 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 6.52 Total: -1.53 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -6.81 Total: -128.75 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.99 Total: -23.63 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -75.74 0.21 -75.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282028651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.984 kcal (2) G-P(sol) polarization free energy of solvation -75.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds