Wall clock time and date at job start Tue Mar 31 2020 17:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35678 * 116.99669 * 2 1 4 4 C 1.38924 * 119.68146 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.11023 * 179.74855 * 4 3 2 6 6 C 1.38830 * 118.48242 * 0.53989 * 5 4 3 7 7 C 1.50702 * 120.35401 * 179.73491 * 6 5 4 8 8 C 1.53001 * 109.47122 * 269.72639 * 7 6 5 9 9 C 1.50702 * 109.47122 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99697 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99557 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99277 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.85606 * 336.20150 * 12 11 9 14 14 C 1.53788 * 113.68915 * 107.47201 * 12 11 9 15 15 C 1.53781 * 87.08133 * 89.12309 * 14 12 11 16 16 H 1.08999 * 113.68934 * 270.87025 * 15 14 12 17 17 C 1.53000 * 113.61015 * 139.98344 * 15 14 12 18 18 N 1.46499 * 109.47100 * 87.50268 * 17 15 14 19 19 C 1.36939 * 119.99547 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53775 * 87.08175 * 25.43371 * 15 14 12 28 28 C 1.38047 * 119.28855 * 359.46127 * 6 5 4 29 29 N 1.31956 * 120.83828 * 0.27670 * 28 6 5 30 30 H 1.09002 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47650 * 299.99697 * 1 2 3 32 32 H 1.09001 * 109.46981 * 59.99889 * 1 2 3 33 33 H 1.07997 * 120.44445 * 0.05152 * 4 3 2 34 34 H 1.07998 * 120.75967 * 180.30085 * 5 4 3 35 35 H 1.08999 * 109.46849 * 149.72401 * 7 6 5 36 36 H 1.08998 * 109.46849 * 29.72236 * 7 6 5 37 37 H 1.08996 * 109.47370 * 59.99370 * 8 7 6 38 38 H 1.09010 * 109.46572 * 299.99804 * 8 7 6 39 39 H 0.96996 * 120.00471 * 0.02562 * 11 9 8 40 40 H 1.09003 * 113.60743 * 334.57158 * 14 12 11 41 41 H 1.09002 * 113.61298 * 203.67443 * 14 12 11 42 42 H 1.08994 * 109.47445 * 327.49940 * 17 15 14 43 43 H 1.08999 * 109.46641 * 207.50069 * 17 15 14 44 44 H 0.96998 * 120.00185 * 359.97438 * 18 17 15 45 45 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 46 46 H 1.08997 * 113.61951 * 89.11763 * 27 15 14 47 47 H 1.09006 * 113.61231 * 220.01664 * 27 15 14 48 48 H 1.08004 * 119.57689 * 180.29737 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4325 1.2740 0.0005 5 6 4.0484 2.5133 -0.0048 6 6 3.2503 3.6492 0.0010 7 6 3.8766 5.0199 0.0016 8 6 4.0881 5.4834 1.4443 9 6 4.7138 6.8544 1.4449 10 8 4.9653 7.4065 0.3948 11 7 4.9929 7.4672 2.6124 12 6 5.6017 8.7997 2.6128 13 1 6.1470 9.0164 1.6943 14 6 4.6363 9.9199 3.0350 15 6 5.0866 9.6555 4.4814 16 1 4.4923 8.8988 4.9937 17 6 5.2682 10.9292 5.3093 18 7 3.9906 11.2985 5.9238 19 6 3.9087 12.4123 6.7162 20 1 4.7858 13.0183 6.8885 21 6 2.6980 12.7625 7.2981 22 7 1.6288 12.0243 7.0878 23 14 2.5863 14.2815 8.3796 24 1 2.8716 13.9083 9.7884 25 1 1.2201 14.8560 8.2867 26 1 3.5785 15.2879 7.9235 27 6 6.3984 9.1125 3.8905 28 6 1.8769 3.5097 0.0005 29 7 1.3185 2.3141 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.0228 0.3696 0.0001 34 1 5.1253 2.5949 -0.0094 35 1 3.2183 5.7204 -0.5123 36 1 4.8373 4.9806 -0.5119 37 1 4.7464 4.7829 1.9582 38 1 3.1274 5.5226 1.9578 39 1 4.7914 7.0257 3.4522 40 1 3.5877 9.6837 2.8539 41 1 4.9200 10.9042 2.6624 42 1 5.6073 11.7380 4.6621 43 1 6.0090 10.7531 6.0891 44 1 3.2028 10.7541 5.7695 45 1 1.6869 11.2354 6.5265 46 1 7.1638 9.8760 3.7519 47 1 6.7723 8.2246 4.4003 48 1 1.2516 4.3903 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283061465.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:07 Heat of formation + Delta-G solvation = -16.664558 kcal Electronic energy + Delta-G solvation = -26855.244068 eV Core-core repulsion = 22911.212278 eV Total energy + Delta-G solvation = -3944.031790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07501 -40.30201 -38.70595 -38.24704 -34.83594 -34.48935 -33.29599 -32.59791 -30.86428 -30.00864 -27.74185 -26.66287 -25.58925 -25.07903 -23.85312 -23.22917 -22.13673 -21.58824 -20.62466 -19.13946 -18.79987 -17.55154 -17.45625 -17.21096 -16.38964 -16.05182 -15.73851 -15.46593 -15.02935 -14.90197 -14.73116 -14.62914 -14.06813 -13.83669 -13.67622 -13.60349 -13.45959 -13.25962 -13.16090 -12.64736 -12.47528 -12.38768 -12.24507 -11.97090 -11.71601 -11.48638 -11.43001 -10.74387 -10.70729 -10.53808 -10.32529 -10.30119 -10.04632 -10.03764 -9.97729 -9.93279 -9.16468 -9.05491 -8.84892 -8.77341 -6.98086 -6.09920 -3.08794 0.72814 0.84261 2.47597 2.69917 2.98288 3.36202 3.51758 3.56869 3.70903 3.91694 4.28196 4.48192 4.54307 4.57116 4.61635 4.62670 4.74914 4.76186 4.84488 4.89495 4.92921 4.95100 5.03128 5.05500 5.20839 5.23426 5.26591 5.47419 5.55247 5.61878 5.65899 5.75076 5.78356 5.85428 5.88972 5.93910 5.99891 6.03753 6.14301 6.18707 6.30008 6.55902 6.69943 6.81804 6.84628 7.36956 7.44383 7.82231 8.08257 8.76874 9.25015 10.11354 10.26702 11.38966 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.001698 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.624243 B =16481.364172 C =17837.150653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.313 3.687 4 C -0.188 4.188 5 C -0.037 4.037 6 C -0.171 4.171 7 C -0.054 4.054 8 C -0.137 4.137 9 C 0.515 3.485 10 O -0.542 6.542 11 N -0.710 5.710 12 C 0.116 3.884 13 H 0.099 0.901 14 C -0.139 4.139 15 C -0.115 4.115 16 H 0.086 0.914 17 C 0.168 3.832 18 N -0.743 5.743 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.945 5.945 23 Si 1.083 2.917 24 H -0.296 1.296 25 H -0.288 1.288 26 H -0.295 1.295 27 C -0.137 4.137 28 C 0.145 3.855 29 N -0.538 5.538 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.366 0.634 45 H 0.254 0.746 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -24.180 -15.842 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.135 3.865 4 C -0.209 4.209 5 C -0.062 4.062 6 C -0.173 4.173 7 C -0.093 4.093 8 C -0.177 4.177 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.361 5.361 12 C 0.010 3.990 13 H 0.117 0.883 14 C -0.178 4.178 15 C -0.134 4.134 16 H 0.104 0.896 17 C 0.040 3.960 18 N -0.389 5.389 19 C -0.462 4.462 20 H 0.082 0.918 21 C -0.244 4.244 22 N -0.591 5.591 23 Si 0.914 3.086 24 H -0.223 1.223 25 H -0.214 1.214 26 H -0.222 1.222 27 C -0.176 4.176 28 C -0.011 4.011 29 N -0.261 5.261 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.763 -23.064 -15.639 28.119 hybrid contribution 1.308 -1.128 -0.396 1.772 sum 5.071 -24.193 -16.035 29.464 Atomic orbital electron populations 1.22868 0.77076 1.02984 1.02587 1.86231 1.23057 1.24614 1.87834 1.19888 0.89481 0.84754 0.92411 1.21077 0.92012 0.99592 1.08171 1.21363 1.00605 0.90710 0.93556 1.20755 0.94765 0.96414 1.05405 1.20169 1.02110 0.91563 0.95424 1.21695 1.02730 0.94057 0.99226 1.20651 0.78050 0.87511 0.83668 1.90707 1.52942 1.66991 1.31258 1.45734 1.63295 1.18426 1.08654 1.21927 0.95449 0.82194 0.99386 0.88263 1.23416 0.99663 0.98533 0.96153 1.22775 0.96250 0.98941 0.95439 0.89613 1.20574 0.89548 0.92216 0.93645 1.42355 1.06315 1.31197 1.58990 1.20086 0.97584 1.03475 1.25101 0.91779 1.25784 0.91657 1.04945 1.02056 1.70849 1.29524 1.17656 1.41090 0.83189 0.75373 0.74583 0.75443 1.22339 1.21382 1.22164 1.23302 0.97454 1.01263 0.95578 1.22379 0.92317 0.93641 0.92734 1.67340 1.40924 0.98807 1.19012 0.88607 0.92185 0.92269 0.84097 0.84007 0.89733 0.89905 0.88751 0.88552 0.76400 0.91440 0.89125 0.96120 0.96354 0.80105 0.93439 0.88706 0.91241 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.31 -2.85 10.48 -18.74 -0.20 -3.05 16 3 C 0.31 3.00 7.49 -17.12 -0.13 2.87 16 4 C -0.19 -1.44 10.04 -39.27 -0.39 -1.83 16 5 C -0.04 -0.25 9.85 -39.31 -0.39 -0.63 16 6 C -0.17 -1.25 5.15 -104.47 -0.54 -1.79 16 7 C -0.05 -0.40 4.66 -27.88 -0.13 -0.53 16 8 C -0.14 -0.98 5.68 -27.88 -0.16 -1.14 16 9 C 0.51 5.55 7.83 -10.99 -0.09 5.46 16 10 O -0.54 -7.91 15.58 5.56 0.09 -7.82 16 11 N -0.71 -7.30 5.27 -53.01 -0.28 -7.58 16 12 C 0.12 1.40 4.32 -67.11 -0.29 1.11 16 13 H 0.10 1.28 7.47 -51.93 -0.39 0.90 16 14 C -0.14 -2.02 7.43 -25.91 -0.19 -2.21 16 15 C -0.12 -1.74 3.63 -89.81 -0.33 -2.07 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 17 C 0.17 3.35 6.10 -4.04 -0.02 3.33 16 18 N -0.74 -18.90 5.60 -59.91 -0.34 -19.24 16 19 C -0.33 -9.52 9.99 -15.06 -0.15 -9.67 16 20 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 21 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 22 N -0.95 -29.53 13.70 55.49 0.76 -28.76 16 23 Si 1.08 26.23 29.92 -169.99 -5.09 21.14 16 24 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.14 -1.61 7.39 -25.92 -0.19 -1.80 16 28 C 0.14 1.21 10.85 -17.57 -0.19 1.01 16 29 N -0.54 -5.33 9.22 -13.33 -0.12 -5.45 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.40 3.31 8.70 -40.82 -0.36 2.96 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 42 H 0.02 0.43 7.84 -51.93 -0.41 0.02 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.37 9.48 6.50 -40.82 -0.27 9.22 16 45 H 0.25 7.81 6.77 -40.82 -0.28 7.53 16 46 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -35.98 401.96 -8.99 -44.96 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.63 Total: 7.80 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.24 Total: -8.05 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.02 Total: -61.04 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.11 Total: -10.87 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.98 -8.99 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283061465.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.298 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds