Wall clock time and date at job start Tue Mar 31 2020 17:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35678 * 116.99669 * 2 1 4 4 C 1.38924 * 119.68146 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.11023 * 179.74855 * 4 3 2 6 6 C 1.38830 * 118.48242 * 0.53989 * 5 4 3 7 7 C 1.50702 * 120.35401 * 179.73491 * 6 5 4 8 8 C 1.53001 * 109.47122 * 269.72639 * 7 6 5 9 9 C 1.50702 * 109.47122 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99697 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99557 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99277 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.85606 * 336.20150 * 12 11 9 14 14 C 1.53788 * 113.68915 * 107.47201 * 12 11 9 15 15 C 1.53781 * 87.08133 * 89.12309 * 14 12 11 16 16 H 1.08999 * 113.68934 * 270.87025 * 15 14 12 17 17 C 1.53000 * 113.61015 * 139.98344 * 15 14 12 18 18 N 1.46499 * 109.47100 * 87.50268 * 17 15 14 19 19 C 1.36939 * 119.99547 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53775 * 87.08175 * 25.43371 * 15 14 12 28 28 C 1.38047 * 119.28855 * 359.46127 * 6 5 4 29 29 N 1.31956 * 120.83828 * 0.27670 * 28 6 5 30 30 H 1.09002 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47650 * 299.99697 * 1 2 3 32 32 H 1.09001 * 109.46981 * 59.99889 * 1 2 3 33 33 H 1.07997 * 120.44445 * 0.05152 * 4 3 2 34 34 H 1.07998 * 120.75967 * 180.30085 * 5 4 3 35 35 H 1.08999 * 109.46849 * 149.72401 * 7 6 5 36 36 H 1.08998 * 109.46849 * 29.72236 * 7 6 5 37 37 H 1.08996 * 109.47370 * 59.99370 * 8 7 6 38 38 H 1.09010 * 109.46572 * 299.99804 * 8 7 6 39 39 H 0.96996 * 120.00471 * 0.02562 * 11 9 8 40 40 H 1.09003 * 113.60743 * 334.57158 * 14 12 11 41 41 H 1.09002 * 113.61298 * 203.67443 * 14 12 11 42 42 H 1.08994 * 109.47445 * 327.49940 * 17 15 14 43 43 H 1.08999 * 109.46641 * 207.50069 * 17 15 14 44 44 H 0.96998 * 120.00185 * 359.97438 * 18 17 15 45 45 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 46 46 H 1.08997 * 113.61951 * 89.11763 * 27 15 14 47 47 H 1.09006 * 113.61231 * 220.01664 * 27 15 14 48 48 H 1.08004 * 119.57689 * 180.29737 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4325 1.2740 0.0005 5 6 4.0484 2.5133 -0.0048 6 6 3.2503 3.6492 0.0010 7 6 3.8766 5.0199 0.0016 8 6 4.0881 5.4834 1.4443 9 6 4.7138 6.8544 1.4449 10 8 4.9653 7.4065 0.3948 11 7 4.9929 7.4672 2.6124 12 6 5.6017 8.7997 2.6128 13 1 6.1470 9.0164 1.6943 14 6 4.6363 9.9199 3.0350 15 6 5.0866 9.6555 4.4814 16 1 4.4923 8.8988 4.9937 17 6 5.2682 10.9292 5.3093 18 7 3.9906 11.2985 5.9238 19 6 3.9087 12.4123 6.7162 20 1 4.7858 13.0183 6.8885 21 6 2.6980 12.7625 7.2981 22 7 1.6288 12.0243 7.0878 23 14 2.5863 14.2815 8.3796 24 1 2.8716 13.9083 9.7884 25 1 1.2201 14.8560 8.2867 26 1 3.5785 15.2879 7.9235 27 6 6.3984 9.1125 3.8905 28 6 1.8769 3.5097 0.0005 29 7 1.3185 2.3141 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.0228 0.3696 0.0001 34 1 5.1253 2.5949 -0.0094 35 1 3.2183 5.7204 -0.5123 36 1 4.8373 4.9806 -0.5119 37 1 4.7464 4.7829 1.9582 38 1 3.1274 5.5226 1.9578 39 1 4.7914 7.0257 3.4522 40 1 3.5877 9.6837 2.8539 41 1 4.9200 10.9042 2.6624 42 1 5.6073 11.7380 4.6621 43 1 6.0090 10.7531 6.0891 44 1 3.2028 10.7541 5.7695 45 1 1.6869 11.2354 6.5265 46 1 7.1638 9.8760 3.7519 47 1 6.7723 8.2246 4.4003 48 1 1.2516 4.3903 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283061465.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:06 Heat of formation + Delta-G solvation = -42.270819 kcal Electronic energy + Delta-G solvation = -26856.354439 eV Core-core repulsion = 22911.212278 eV Total energy + Delta-G solvation = -3945.142161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68785 -41.25742 -39.65103 -38.97140 -36.68767 -35.15992 -34.47476 -33.19433 -32.68235 -30.71276 -28.47635 -28.05449 -26.68454 -25.94514 -25.07687 -24.39757 -23.21894 -22.63320 -21.41193 -20.31374 -19.38518 -19.28998 -18.28039 -18.14428 -17.12833 -16.98064 -16.76913 -16.49889 -16.09082 -15.94325 -15.63933 -15.46167 -15.30672 -15.14507 -14.89066 -14.73032 -14.39001 -14.19653 -13.99056 -13.81953 -13.41368 -13.19472 -13.02145 -12.91000 -12.66637 -12.57779 -12.54869 -12.07662 -12.01295 -11.93939 -11.87190 -11.63511 -11.34450 -11.06904 -10.97598 -10.87666 -10.79726 -10.60621 -10.03494 -9.37919 -9.10475 -8.41799 -5.34801 0.13301 0.27670 1.57575 1.63521 1.68485 1.82798 2.13848 2.18425 2.70443 2.75072 3.34343 3.37495 3.50409 3.54669 3.64025 3.85679 3.88462 3.94476 3.96355 4.03769 4.14075 4.19866 4.29554 4.37011 4.40298 4.44466 4.49083 4.66097 4.70840 4.72650 4.74846 4.78951 4.83931 4.88758 4.91372 4.93304 4.99941 5.08068 5.18211 5.20763 5.31393 5.37540 5.50045 5.56978 5.66019 6.22127 6.48428 6.56356 6.83531 7.09365 7.26395 8.00409 8.10896 9.10584 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.001698 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.624243 B =16481.364172 C =17837.150653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.290 3.710 4 C -0.191 4.191 5 C -0.032 4.032 6 C -0.166 4.166 7 C -0.047 4.047 8 C -0.128 4.128 9 C 0.513 3.487 10 O -0.583 6.583 11 N -0.704 5.704 12 C 0.128 3.872 13 H 0.094 0.906 14 C -0.144 4.144 15 C -0.113 4.113 16 H 0.087 0.913 17 C 0.164 3.836 18 N -0.756 5.756 19 C -0.337 4.337 20 H 0.065 0.935 21 C -0.106 4.106 22 N -0.975 5.975 23 Si 1.131 2.869 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.274 1.274 27 C -0.117 4.117 28 C 0.131 3.869 29 N -0.560 5.560 30 H 0.121 0.879 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.414 0.586 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.360 0.640 45 H 0.244 0.756 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -25.110 -15.493 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.211 4.211 5 C -0.057 4.057 6 C -0.168 4.168 7 C -0.086 4.086 8 C -0.168 4.168 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.356 5.356 12 C 0.022 3.978 13 H 0.112 0.888 14 C -0.183 4.183 15 C -0.131 4.131 16 H 0.105 0.895 17 C 0.038 3.962 18 N -0.401 5.401 19 C -0.469 4.469 20 H 0.083 0.917 21 C -0.297 4.297 22 N -0.623 5.623 23 Si 0.955 3.045 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.199 1.199 27 C -0.155 4.155 28 C -0.025 4.025 29 N -0.283 5.283 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.251 0.749 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.192 0.808 45 H 0.054 0.946 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.507 -24.026 -15.288 29.005 hybrid contribution 0.808 -0.838 -0.553 1.289 sum 6.315 -24.864 -15.841 30.150 Atomic orbital electron populations 1.22998 0.76160 1.04481 1.02007 1.86210 1.24098 1.24768 1.87995 1.20247 0.90417 0.84784 0.93360 1.21357 0.91436 1.00762 1.07560 1.21687 1.01913 0.89915 0.92212 1.20738 0.94374 0.96614 1.05066 1.20075 1.01767 0.91225 0.95529 1.21701 1.03476 0.92124 0.99450 1.21275 0.77175 0.88455 0.82931 1.90695 1.54689 1.68237 1.32684 1.45705 1.62837 1.17655 1.09369 1.21692 0.94420 0.82271 0.99388 0.88766 1.23424 0.99417 0.99338 0.96137 1.22701 0.98954 0.96818 0.94647 0.89514 1.20770 0.87204 0.94382 0.93828 1.42589 1.08009 1.30478 1.59014 1.20460 0.97553 1.04144 1.24733 0.91677 1.27250 0.91501 1.07378 1.03566 1.70962 1.30605 1.18291 1.42473 0.82583 0.75524 0.71862 0.74483 1.20943 1.21926 1.19903 1.23214 0.95794 1.02115 0.94377 1.22628 0.93173 0.93567 0.93091 1.67309 1.41763 0.99399 1.19848 0.86098 0.92809 0.92772 0.82427 0.81264 0.90909 0.89913 0.86127 0.87405 0.74937 0.92965 0.90069 0.96502 0.96268 0.80817 0.94564 0.87890 0.88823 0.81374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.68 16 2 O -0.32 -5.86 10.48 -89.96 -0.94 -6.80 16 3 C 0.29 5.42 7.49 84.79 0.63 6.06 16 4 C -0.19 -2.63 10.04 22.47 0.23 -2.40 16 5 C -0.03 -0.35 9.85 22.45 0.22 -0.13 16 6 C -0.17 -2.16 5.15 -19.77 -0.10 -2.26 16 7 C -0.05 -0.62 4.66 29.85 0.14 -0.48 16 8 C -0.13 -1.51 5.68 29.85 0.17 -1.34 16 9 C 0.51 10.18 7.83 87.66 0.69 10.87 16 10 O -0.58 -16.54 15.58 -3.02 -0.05 -16.58 16 11 N -0.70 -13.01 5.27 -440.02 -2.32 -15.33 16 12 C 0.13 2.89 4.32 45.52 0.20 3.09 16 13 H 0.09 2.31 7.47 -2.39 -0.02 2.29 16 14 C -0.14 -4.14 7.43 31.12 0.23 -3.91 16 15 C -0.11 -3.27 3.63 -10.27 -0.04 -3.30 16 16 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 17 C 0.16 6.49 6.10 86.38 0.53 7.01 16 18 N -0.76 -38.72 5.60 -343.46 -1.92 -40.64 16 19 C -0.34 -19.39 9.99 84.03 0.84 -18.55 16 20 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 21 C -0.11 -6.24 5.50 84.86 0.47 -5.77 16 22 N -0.98 -61.64 13.70 21.65 0.30 -61.35 16 23 Si 1.13 52.44 29.92 68.60 2.05 54.50 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C -0.12 -2.42 7.39 31.12 0.23 -2.19 16 28 C 0.13 2.10 10.85 84.63 0.92 3.02 16 29 N -0.56 -11.03 9.22 -308.95 -2.85 -13.88 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 33 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 36 H 0.08 1.11 8.05 -2.39 -0.02 1.09 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.09 8.14 -2.38 -0.02 1.08 16 39 H 0.41 5.68 8.70 -92.71 -0.81 4.87 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.46 7.90 -2.39 -0.02 2.44 16 42 H 0.02 0.69 7.84 -2.39 -0.02 0.67 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.36 19.02 6.50 -92.71 -0.60 18.41 16 45 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 46 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 47 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -78.46 401.96 0.50 -77.96 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.30 Total: 30.75 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 6.52 Total: -8.63 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -6.79 Total: -131.20 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.99 Total: -23.39 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.05 Total: 54.50 kcal Total: -78.46 0.50 -77.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283061465.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.690 kcal (2) G-P(sol) polarization free energy of solvation -78.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds