Wall clock time and date at job start Tue Mar 31 2020 17:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99594 * 2 1 4 4 O 1.21283 * 120.00089 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 0.02562 * 3 2 1 6 6 O 1.42905 * 109.47085 * 180.02562 * 5 3 2 7 7 C 1.42901 * 113.99701 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.46885 * 180.02562 * 7 6 5 9 9 C 1.38682 * 120.41504 * 269.71662 * 8 7 6 10 10 C 1.38626 * 118.41779 * 179.78490 * 9 8 7 11 11 C 1.38230 * 119.16099 * 0.51043 * 10 9 8 12 12 N 1.31854 * 120.76455 * 359.73268 * 11 10 9 13 13 C 1.31882 * 121.72327 * 359.97438 * 12 11 10 14 14 C 1.46501 * 120.00098 * 179.97438 * 2 1 3 15 15 H 1.09000 * 109.46894 * 180.02562 * 14 2 1 16 16 C 1.52993 * 109.47004 * 300.00173 * 14 2 1 17 17 N 1.46500 * 109.47250 * 304.99865 * 16 14 2 18 18 C 1.36946 * 119.99962 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99598 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99957 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00224 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47217 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47485 * 119.99670 * 22 20 18 25 25 H 1.48502 * 109.47597 * 240.00047 * 22 20 18 26 26 C 1.52998 * 109.46930 * 60.00307 * 14 2 1 27 27 C 1.53004 * 117.49676 * 248.74536 * 26 14 2 28 28 C 1.53003 * 117.49680 * 180.08846 * 26 14 2 29 29 H 1.09001 * 109.47060 * 90.00388 * 1 2 3 30 30 H 1.09004 * 109.47073 * 209.99877 * 1 2 3 31 31 H 1.09000 * 109.47212 * 329.99960 * 1 2 3 32 32 H 1.09000 * 109.47188 * 299.99755 * 5 3 2 33 33 H 1.08996 * 109.47042 * 59.99980 * 5 3 2 34 34 H 1.09001 * 109.46789 * 299.99463 * 7 6 5 35 35 H 1.08997 * 109.47698 * 59.99544 * 7 6 5 36 36 H 1.07994 * 120.78940 * 0.02562 * 9 8 7 37 37 H 1.07998 * 120.41813 * 180.22358 * 10 9 8 38 38 H 1.08004 * 119.61792 * 179.75005 * 11 10 9 39 39 H 1.08002 * 119.61657 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47324 * 64.99985 * 16 14 2 41 41 H 1.09003 * 109.47102 * 185.00175 * 16 14 2 42 42 H 0.96992 * 119.99927 * 0.02562 * 17 16 14 43 43 H 0.96997 * 120.00642 * 180.02562 * 21 20 18 44 44 H 1.09001 * 115.55283 * 34.41226 * 26 14 2 45 45 H 1.08997 * 117.50189 * 0.02562 * 27 26 14 46 46 H 1.08999 * 117.49784 * 145.02515 * 27 26 14 47 47 H 1.09000 * 117.49556 * 214.98191 * 28 26 14 48 48 H 1.08992 * 117.49700 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 8 2.3139 3.5585 -0.0001 7 6 1.6993 4.8486 0.0009 8 6 2.7660 5.9131 -0.0006 9 6 3.2606 6.4132 1.1947 10 6 4.2445 7.3884 1.1450 11 6 4.6891 7.8346 -0.0855 12 7 4.1922 7.3398 -1.2021 13 6 3.2597 6.4073 -1.1928 14 6 2.1976 -1.2687 0.0006 15 1 3.2692 -1.0695 0.0009 16 6 1.8279 -2.0704 1.2501 17 7 2.0707 -1.2552 2.4429 18 6 1.8112 -1.7669 3.6864 19 1 1.4281 -2.7716 3.7877 20 6 2.0407 -0.9944 4.8165 21 7 2.5082 0.2298 4.6931 22 14 1.6875 -1.6925 6.5127 23 1 1.1732 -3.0793 6.3800 24 1 2.9377 -1.7024 7.3142 25 1 0.6704 -0.8509 7.1926 26 6 1.8280 -2.0715 -1.2483 27 6 1.0116 -3.3503 -1.0502 28 6 2.4915 -3.4380 -1.4317 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.7583 2.5303 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 1.0782 4.9558 -0.8884 35 1 1.0801 4.9554 0.8915 36 1 2.8908 6.0486 2.1416 37 1 4.6551 7.7978 2.0561 38 1 5.4525 8.5971 -0.1328 39 1 2.8770 6.0257 -2.1279 40 1 0.7742 -2.3459 1.2066 41 1 2.4378 -2.9727 1.2964 42 1 2.4152 -0.3531 2.3519 43 1 2.6690 0.7696 5.4828 44 1 1.6317 -1.4829 -2.1446 45 1 0.7375 -3.6194 -0.0302 46 1 0.2787 -3.6032 -1.8163 47 1 2.7314 -3.7484 -2.4486 48 1 3.1915 -3.7647 -0.6629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283557134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:50 Heat of formation + Delta-G solvation = -12.809144 kcal Electronic energy + Delta-G solvation = -28644.325014 eV Core-core repulsion = 24700.460407 eV Total energy + Delta-G solvation = -3943.864607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32692 -41.07746 -39.31274 -38.28257 -36.40441 -35.77393 -33.95240 -33.14213 -32.71487 -30.49779 -28.73163 -27.65636 -26.96343 -25.80407 -24.55319 -24.05300 -23.09801 -22.99782 -21.37241 -19.97579 -19.06153 -18.54888 -18.00732 -17.74683 -17.71085 -17.15833 -16.98276 -16.73298 -16.26622 -16.02451 -15.85358 -15.20529 -15.03720 -14.94478 -14.73364 -14.61339 -14.37715 -14.02655 -13.92412 -13.62634 -13.37436 -13.13625 -13.05039 -13.03291 -12.92762 -12.73947 -12.35424 -12.30077 -12.22094 -11.97530 -11.76792 -11.35121 -11.00155 -10.95452 -10.84058 -10.78317 -10.61813 -10.43915 -10.05495 -9.57687 -9.01254 -7.94226 -5.24966 0.03289 0.28478 1.44858 1.46731 1.56430 1.60081 1.79519 2.53955 2.65956 2.94531 3.12422 3.38561 3.49133 3.59234 3.70780 3.85324 3.88736 3.95372 4.03130 4.05369 4.09794 4.12603 4.16175 4.23097 4.26065 4.38643 4.40276 4.44372 4.48427 4.63018 4.67217 4.78171 4.82723 4.84457 4.89092 5.02275 5.06878 5.14126 5.14240 5.24396 5.28319 5.34474 5.46950 5.61100 5.71873 6.03171 6.25035 6.45942 6.95496 7.21985 7.31565 8.06597 8.30436 9.28891 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009025 B = 0.003284 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.593083 B = 8525.066276 C =10941.153724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.504 3.496 4 O -0.581 6.581 5 C 0.055 3.945 6 O -0.394 6.394 7 C 0.103 3.897 8 C -0.154 4.154 9 C -0.070 4.070 10 C -0.175 4.175 11 C 0.092 3.908 12 N -0.514 5.514 13 C 0.107 3.893 14 C 0.169 3.831 15 H 0.061 0.939 16 C 0.145 3.855 17 N -0.742 5.742 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.974 3.026 23 H -0.263 1.263 24 H -0.299 1.299 25 H -0.290 1.290 26 C -0.162 4.162 27 C -0.164 4.164 28 C -0.174 4.174 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 7.849 -14.752 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.325 5.325 3 C 0.293 3.707 4 O -0.460 6.460 5 C -0.023 4.023 6 O -0.313 6.313 7 C 0.027 3.973 8 C -0.156 4.156 9 C -0.096 4.096 10 C -0.195 4.195 11 C -0.064 4.064 12 N -0.223 5.223 13 C -0.049 4.049 14 C 0.065 3.935 15 H 0.079 0.921 16 C 0.018 3.982 17 N -0.384 5.384 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.226 1.226 25 H -0.217 1.217 26 C -0.182 4.182 27 C -0.201 4.201 28 C -0.212 4.212 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.159 0.841 37 H 0.180 0.820 38 H 0.200 0.800 39 H 0.187 0.813 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.136 0.864 45 H 0.112 0.888 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.986 7.994 -15.444 18.741 hybrid contribution -0.051 -0.255 2.209 2.225 sum -7.037 7.739 -13.235 16.869 Atomic orbital electron populations 1.22003 0.77134 1.04145 1.03312 1.47645 1.08380 1.04297 1.72155 1.20955 0.87746 0.86500 0.75537 1.90685 1.16437 1.87769 1.51158 1.22308 0.91355 0.83965 1.04717 1.88059 1.33543 1.13941 1.95773 1.21461 0.92701 0.79745 1.03412 1.20786 1.00991 0.98889 0.94918 1.21894 0.94604 0.94332 0.98751 1.22489 0.97921 0.98226 1.00838 1.23331 0.97636 0.97888 0.87558 1.67746 1.10681 1.11251 1.32574 1.22962 0.91846 0.91962 0.98169 1.20559 0.96003 0.83077 0.93873 0.92076 1.21272 0.98467 0.93023 0.85390 1.42545 1.78717 1.15627 1.01543 1.19660 1.34849 0.98151 0.84733 0.90351 1.25588 1.02746 0.96738 1.01629 1.69889 1.52937 1.10258 1.28855 0.85067 0.76709 0.77999 0.79917 1.18754 1.22619 1.21742 1.22391 1.07524 0.90388 0.97857 1.23212 0.94228 0.99116 1.03543 1.23048 0.96370 0.98348 1.03392 0.89149 0.91064 0.90313 0.86001 0.89037 0.88813 0.90793 0.84071 0.81985 0.79969 0.81263 0.93578 0.95845 0.79817 0.94213 0.86430 0.88832 0.86309 0.86666 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 9.61 127.77 1.23 2.96 16 2 N -0.59 -19.23 2.24 -822.58 -1.85 -21.07 16 3 C 0.50 18.97 7.45 87.66 0.65 19.62 16 4 O -0.58 -28.55 15.83 16.00 0.25 -28.30 16 5 C 0.06 1.53 4.97 71.24 0.35 1.88 16 6 O -0.39 -12.61 9.86 -129.94 -1.28 -13.89 16 7 C 0.10 2.26 6.09 71.24 0.43 2.69 16 8 C -0.15 -3.74 5.53 -19.77 -0.11 -3.85 16 9 C -0.07 -1.64 9.86 22.47 0.22 -1.42 16 10 C -0.18 -3.51 10.11 22.36 0.23 -3.28 16 11 C 0.09 1.91 11.18 84.69 0.95 2.86 16 12 N -0.51 -12.92 10.36 -195.84 -2.03 -14.95 16 13 C 0.11 2.57 10.86 84.67 0.92 3.49 16 14 C 0.17 5.93 2.59 44.99 0.12 6.05 16 15 H 0.06 2.67 6.90 -2.39 -0.02 2.65 16 16 C 0.15 5.81 4.14 86.38 0.36 6.17 16 17 N -0.74 -38.89 5.43 -343.46 -1.87 -40.76 16 18 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 21 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 22 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 23 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 C -0.16 -4.08 5.48 -10.79 -0.06 -4.14 16 27 C -0.16 -3.41 9.59 30.62 0.29 -3.12 16 28 C -0.17 -3.93 9.94 30.62 0.30 -3.63 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.77 6.53 -2.38 -0.02 1.76 16 31 H 0.08 1.61 6.44 -2.39 -0.02 1.60 16 32 H 0.12 2.13 8.11 -2.39 -0.02 2.11 16 33 H 0.09 2.35 7.40 -2.39 -0.02 2.34 16 34 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.05 1.69 5.34 -2.39 -0.01 1.68 16 41 H 0.02 0.97 7.44 -2.39 -0.02 0.95 16 42 H 0.37 21.67 7.06 -92.71 -0.65 21.02 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.09 2.22 5.80 -2.39 -0.01 2.20 16 46 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 2.12 7.66 -2.39 -0.02 2.10 16 Total: -1.00 -83.79 396.36 3.05 -80.74 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.32 Total: 41.00 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 7.19 Total: 9.57 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -5.46 Total: -137.66 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.03 Total: -42.19 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -83.79 3.05 -80.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283557134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.929 kcal (2) G-P(sol) polarization free energy of solvation -83.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds