Wall clock time and date at job start Tue Mar 31 2020 17:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35737 * 116.99929 * 2 1 4 4 C 1.39285 * 120.84764 * 0.02562 * 3 2 1 5 5 C 1.37949 * 119.09241 * 179.97438 * 4 3 2 6 6 N 1.31977 * 120.82345 * 359.97438 * 5 4 3 7 7 C 1.31948 * 121.86527 * 0.02562 * 6 5 4 8 8 C 1.37994 * 120.82037 * 0.27418 * 7 6 5 9 9 C 1.50699 * 120.45285 * 179.70042 * 8 7 6 10 10 C 1.50696 * 109.47477 * 265.00174 * 9 8 7 11 11 O 1.21277 * 119.99858 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00133 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99990 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.67196 * 31.76549 * 13 12 10 15 15 C 1.54886 * 110.75777 * 268.32569 * 13 12 10 16 16 C 1.54267 * 104.19602 * 203.74205 * 15 13 12 17 17 C 1.53877 * 106.60050 * 23.61286 * 16 15 13 18 18 H 1.08996 * 110.06929 * 240.69455 * 17 16 15 19 19 C 1.52995 * 110.03323 * 119.27843 * 17 16 15 20 20 N 1.46499 * 109.46899 * 67.83922 * 19 17 16 21 21 C 1.36936 * 119.99845 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00626 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99856 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00053 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99919 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46813 * 90.00212 * 25 23 21 27 27 H 1.48498 * 109.47159 * 210.00068 * 25 23 21 28 28 H 1.48495 * 109.47236 * 330.00308 * 25 23 21 29 29 C 1.54272 * 106.59540 * 359.97438 * 17 16 15 30 30 H 1.09008 * 109.47240 * 59.99524 * 1 2 3 31 31 H 1.09002 * 109.47610 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47056 * 299.99723 * 1 2 3 33 33 H 1.07999 * 120.45414 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.58863 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.58730 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47020 * 25.00347 * 9 8 7 37 37 H 1.09005 * 109.46829 * 144.99904 * 9 8 7 38 38 H 0.97002 * 119.99503 * 359.97438 * 12 10 9 39 39 H 1.08997 * 110.48780 * 322.42412 * 15 13 12 40 40 H 1.08999 * 110.48772 * 85.06216 * 15 13 12 41 41 H 1.08994 * 110.03424 * 264.32301 * 16 15 13 42 42 H 1.09001 * 110.06863 * 142.91590 * 16 15 13 43 43 H 1.09005 * 109.47120 * 187.83194 * 19 17 16 44 44 H 1.08999 * 109.47507 * 307.83380 * 19 17 16 45 45 H 0.97003 * 119.99988 * 359.97438 * 20 19 17 46 46 H 0.96997 * 120.00434 * 179.97438 * 24 23 21 47 47 H 1.09004 * 110.48419 * 217.71390 * 29 17 16 48 48 H 1.08998 * 110.48689 * 95.07143 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6457 0.0016 7 6 4.0231 2.5509 0.0011 8 6 3.4345 1.3028 -0.0056 9 6 4.2838 0.0579 -0.0129 10 6 4.4641 -0.4189 -1.4310 11 8 3.9537 0.1922 -2.3458 12 7 5.1927 -1.5246 -1.6827 13 6 5.3674 -1.9885 -3.0613 14 1 5.3738 -1.1460 -3.7529 15 6 4.2649 -3.0077 -3.4415 16 6 4.8883 -3.8290 -4.5889 17 6 6.4148 -3.7109 -4.4351 18 1 6.8454 -3.2470 -5.3224 19 6 7.0283 -5.0955 -4.2177 20 7 6.8882 -5.8892 -5.4410 21 6 7.3676 -7.1712 -5.4841 22 1 7.8494 -7.5970 -4.6165 23 6 7.2344 -7.9234 -6.6432 24 7 7.6956 -9.1554 -6.6848 25 14 6.4003 -7.1872 -8.1437 26 1 7.4152 -6.5142 -8.9937 27 1 5.7396 -8.2657 -8.9218 28 1 5.3834 -6.1964 -7.7086 29 6 6.6657 -2.8214 -3.1998 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2244 2.3566 0.0005 34 1 1.4007 4.5174 0.0011 35 1 5.1000 2.6328 0.0011 36 1 5.2581 0.2803 0.4223 37 1 3.7934 -0.7199 0.5724 38 1 5.6012 -2.0131 -0.9510 39 1 4.0323 -3.6520 -2.5937 40 1 3.3693 -2.4903 -3.7855 41 1 4.5774 -3.4221 -5.5511 42 1 4.5847 -4.8728 -4.5095 43 1 8.0851 -4.9902 -3.9721 44 1 6.5131 -5.5967 -3.3983 45 1 6.4557 -5.5066 -6.2205 46 1 7.6022 -9.6812 -7.4945 47 1 7.5223 -2.1685 -3.3676 48 1 6.8208 -3.4354 -2.3127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284189870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:40 Heat of formation + Delta-G solvation = -36.643499 kcal Electronic energy + Delta-G solvation = -27972.689367 eV Core-core repulsion = 24027.791225 eV Total energy + Delta-G solvation = -3944.898142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20091 -39.88636 -38.58426 -38.12407 -34.98061 -33.75260 -33.38246 -31.59307 -31.29621 -29.10557 -28.90715 -28.01820 -27.23231 -24.47433 -23.30044 -23.02883 -21.90558 -20.79013 -20.67935 -19.33698 -18.74896 -17.57610 -17.55977 -17.29164 -16.44100 -16.21243 -15.74866 -15.43405 -15.36104 -14.97455 -14.62807 -14.51603 -14.29604 -13.87488 -13.79445 -13.54041 -13.34897 -13.02488 -12.77277 -12.71496 -12.39389 -12.19226 -12.01880 -12.00287 -11.62027 -11.56593 -11.37232 -10.95328 -10.85559 -10.49329 -10.40680 -10.26530 -10.08858 -9.96841 -9.86948 -9.57552 -9.49641 -9.10689 -9.08326 -8.87646 -7.20994 -5.75795 -3.10756 0.70078 0.99550 2.50760 2.69163 3.00143 3.38649 3.41922 3.46357 3.50809 4.03273 4.22823 4.37065 4.45379 4.56021 4.60458 4.64904 4.69048 4.70351 4.78425 4.87938 4.93192 4.94865 5.04046 5.17478 5.32410 5.39688 5.49490 5.52703 5.53877 5.55094 5.60480 5.66474 5.74168 5.84979 5.93107 6.04143 6.14240 6.17168 6.22146 6.34533 6.49184 6.54589 6.72618 6.75140 6.83683 7.37089 7.65955 8.00968 8.10473 8.43561 9.23216 9.95788 10.16104 11.42715 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.001973 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.013285 B =14189.729939 C =14557.477505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.262 4.262 5 C 0.134 3.866 6 N -0.508 5.508 7 C 0.145 3.855 8 C -0.149 4.149 9 C -0.090 4.090 10 C 0.517 3.483 11 O -0.535 6.535 12 N -0.722 5.722 13 C 0.138 3.862 14 H 0.095 0.905 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.100 4.100 18 H 0.073 0.927 19 C 0.165 3.835 20 N -0.756 5.756 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.276 1.276 29 C -0.120 4.120 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.070 0.930 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 24.427 18.920 33.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.130 3.870 4 C -0.283 4.283 5 C -0.023 4.023 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.153 4.153 9 C -0.131 4.131 10 C 0.303 3.697 11 O -0.411 6.411 12 N -0.373 5.373 13 C 0.034 3.966 14 H 0.113 0.887 15 C -0.169 4.169 16 C -0.157 4.157 17 C -0.119 4.119 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.202 1.202 29 C -0.158 4.158 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.922 25.233 18.322 33.754 hybrid contribution -1.158 -0.674 -0.884 1.605 sum -14.079 24.559 17.438 33.248 Atomic orbital electron populations 1.23156 0.77602 1.04570 1.01597 1.86065 1.21997 1.26189 1.87405 1.19111 0.91836 0.84741 0.91358 1.22188 1.01520 0.93181 1.11413 1.22548 0.90321 0.96955 0.92439 1.67732 1.07114 1.31875 1.15212 1.22519 1.00220 0.86129 0.92263 1.19704 0.90820 0.96383 1.08350 1.20411 1.01096 0.96197 0.95396 1.20459 0.78086 0.80225 0.90921 1.90716 1.47575 1.56215 1.46612 1.46016 1.53596 1.28227 1.09468 1.22047 0.95301 0.96734 0.82524 0.88727 1.22705 0.98010 0.97196 0.98982 1.22171 0.94707 1.01121 0.97709 1.21923 0.95822 0.96698 0.97472 0.90817 1.20715 0.97211 0.88370 0.89908 1.42725 1.72071 1.13863 1.11489 1.19065 1.30781 0.87861 0.99578 0.89285 1.24678 1.00948 0.95964 0.97700 1.69699 1.51595 1.08876 1.28155 0.86547 0.79663 0.78274 0.84083 1.21098 1.21771 1.20243 1.22592 0.96315 0.97678 0.99235 0.92243 0.87720 0.92348 0.84370 0.82548 0.82259 0.87586 0.87489 0.76543 0.91415 0.91803 0.92163 0.90346 0.95657 0.95531 0.80635 0.93099 0.91110 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.83 9.76 -18.92 -0.18 -3.02 16 3 C 0.18 1.78 6.70 -38.82 -0.26 1.52 16 4 C -0.26 -2.14 9.11 -39.30 -0.36 -2.49 16 5 C 0.13 1.14 11.17 -17.60 -0.20 0.94 16 6 N -0.51 -5.28 10.36 -13.33 -0.14 -5.41 16 7 C 0.14 1.37 10.84 -17.59 -0.19 1.18 16 8 C -0.15 -1.43 4.40 -104.34 -0.46 -1.89 16 9 C -0.09 -0.69 5.61 -29.04 -0.16 -0.85 16 10 C 0.52 5.64 7.82 -10.99 -0.09 5.55 16 11 O -0.54 -8.21 15.68 5.56 0.09 -8.13 16 12 N -0.72 -6.77 5.18 -51.89 -0.27 -7.04 16 13 C 0.14 1.59 3.27 -65.95 -0.22 1.38 16 14 H 0.09 1.25 7.55 -51.93 -0.39 0.86 16 15 C -0.13 -1.65 6.51 -25.07 -0.16 -1.81 16 16 C -0.12 -1.74 6.18 -25.61 -0.16 -1.90 16 17 C -0.10 -1.47 2.96 -89.50 -0.27 -1.74 16 18 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 19 C 0.17 3.11 5.27 -4.04 -0.02 3.09 16 20 N -0.76 -17.95 5.19 -59.91 -0.31 -18.26 16 21 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 23 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 24 N -0.94 -29.57 13.97 55.49 0.78 -28.79 16 25 Si 0.88 22.32 27.73 -169.99 -4.71 17.61 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 29 C -0.12 -1.36 5.99 -25.08 -0.15 -1.51 16 30 H 0.06 0.31 7.71 -51.92 -0.40 -0.09 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 33 H 0.14 0.76 6.47 -52.49 -0.34 0.42 16 34 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.11 0.48 8.06 -51.93 -0.42 0.06 16 37 H 0.11 0.70 7.76 -51.93 -0.40 0.29 16 38 H 0.40 2.61 8.57 -40.82 -0.35 2.26 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.30 7.61 -51.93 -0.40 0.91 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.36 8.41 5.41 -40.82 -0.22 8.19 16 46 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -36.84 392.46 -8.33 -45.16 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.54 Total: 6.46 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.95 Total: -4.49 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.06 Total: -59.51 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.10 Total: -11.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.84 -8.33 -45.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284189870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.521 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds