Wall clock time and date at job start Tue Mar 31 2020 17:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35737 * 116.99778 * 2 1 4 4 C 1.39288 * 120.84783 * 0.29725 * 3 2 1 5 5 C 1.37949 * 119.09313 * 180.23906 * 4 3 2 6 6 N 1.31979 * 120.82248 * 359.45976 * 5 4 3 7 7 C 1.31947 * 121.86277 * 0.27400 * 6 5 4 8 8 C 1.37993 * 120.82125 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.45263 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46955 * 264.99826 * 9 8 7 11 11 O 1.21281 * 120.00141 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00006 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99878 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.43468 * 325.69838 * 13 12 10 15 15 C 1.54890 * 110.48869 * 88.24321 * 13 12 10 16 16 C 1.55025 * 102.68303 * 156.51368 * 15 13 12 17 17 C 1.54269 * 104.28445 * 322.23457 * 16 15 13 18 18 H 1.08998 * 110.03061 * 264.23552 * 17 16 15 19 19 C 1.52998 * 110.07623 * 142.82285 * 17 16 15 20 20 N 1.46499 * 109.46771 * 67.81034 * 19 17 16 21 21 C 1.36937 * 119.99881 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99889 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00478 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99429 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00360 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46955 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46699 * 119.99995 * 25 23 21 28 28 H 1.48492 * 109.46958 * 239.99898 * 25 23 21 29 29 C 1.53873 * 106.59568 * 23.51375 * 17 16 15 30 30 H 1.09002 * 109.47057 * 299.99870 * 1 2 3 31 31 H 1.08994 * 109.47787 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.45537 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.59246 * 179.74019 * 5 4 3 35 35 H 1.07998 * 119.59076 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47121 * 24.99996 * 9 8 7 37 37 H 1.08999 * 109.47316 * 145.00125 * 9 8 7 38 38 H 0.96998 * 120.00141 * 0.02562 * 12 10 9 39 39 H 1.08999 * 110.75300 * 274.93208 * 15 13 12 40 40 H 1.09000 * 110.75425 * 38.30119 * 15 13 12 41 41 H 1.09004 * 110.52640 * 203.48868 * 16 15 13 42 42 H 1.09004 * 110.47944 * 80.95347 * 16 15 13 43 43 H 1.08997 * 109.46996 * 187.80860 * 19 17 16 44 44 H 1.08997 * 109.47407 * 307.81002 * 19 17 16 45 45 H 0.96996 * 120.00355 * 0.02562 * 20 19 17 46 46 H 0.97002 * 119.99773 * 179.97438 * 24 23 21 47 47 H 1.08999 * 110.03578 * 240.72006 * 29 17 16 48 48 H 1.09003 * 110.02955 * 119.28777 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 0.0062 5 6 1.9674 3.5981 0.0010 6 7 3.2864 3.6458 0.0009 7 6 4.0229 2.5511 0.0004 8 6 3.4344 1.3029 -0.0005 9 6 4.2837 0.0580 -0.0016 10 6 4.4644 -0.4256 -1.4174 11 8 3.9541 0.1812 -2.3353 12 7 5.1930 -1.5324 -1.6638 13 6 5.3690 -2.0022 -3.0402 14 1 4.4727 -1.8033 -3.6278 15 6 6.6033 -1.3283 -3.6894 16 6 6.9889 -2.3299 -4.8080 17 6 6.7331 -3.7166 -4.1821 18 1 7.6595 -4.1169 -3.7702 19 6 6.1722 -4.6732 -5.2362 20 7 7.2040 -4.9565 -6.2368 21 6 6.9297 -5.7939 -7.2850 22 1 5.9527 -6.2458 -7.3738 23 6 7.9071 -6.0621 -8.2335 24 7 9.0978 -5.5118 -8.1250 25 14 7.5330 -7.2050 -9.6629 26 1 6.1334 -7.6896 -9.5560 27 1 7.7058 -6.4706 -10.9420 28 1 8.4624 -8.3626 -9.6273 29 6 5.7032 -3.5081 -3.0581 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2244 2.3566 0.0115 34 1 1.4006 4.5174 0.0014 35 1 5.0998 2.6329 0.0008 36 1 5.2579 0.2824 0.4328 37 1 3.7932 -0.7170 0.5872 38 1 5.6008 -2.0179 -0.9297 39 1 6.3372 -0.3590 -4.1108 40 1 7.4130 -1.2274 -2.9667 41 1 8.0402 -2.2196 -5.0741 42 1 6.3572 -2.1846 -5.6844 43 1 5.8659 -5.6029 -4.7568 44 1 5.3112 -4.2141 -5.7221 45 1 8.0815 -4.5511 -6.1569 46 1 9.7810 -5.6995 -8.7875 47 1 6.1297 -3.8073 -2.1006 48 1 4.8034 -4.0879 -3.2640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284189871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:43 Heat of formation + Delta-G solvation = -40.126621 kcal Electronic energy + Delta-G solvation = -27876.332143 eV Core-core repulsion = 23931.282961 eV Total energy + Delta-G solvation = -3945.049182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16673 -39.82649 -38.55305 -37.99107 -34.80666 -33.70376 -33.30354 -31.56023 -31.05031 -28.89216 -28.75533 -27.96760 -27.02835 -24.37176 -23.27004 -22.98471 -22.14457 -20.77740 -20.41825 -19.43503 -18.71611 -17.52909 -17.29852 -16.98196 -16.51670 -16.17927 -15.55656 -15.37978 -15.02482 -14.90157 -14.60129 -14.48632 -14.17828 -13.89675 -13.63247 -13.43549 -13.27622 -13.21920 -12.81404 -12.68287 -12.32887 -12.13717 -11.98493 -11.65099 -11.58404 -11.35788 -11.02674 -10.85043 -10.67241 -10.59367 -10.30107 -10.12043 -10.03053 -9.87549 -9.82835 -9.64391 -9.46092 -9.05514 -9.02503 -8.83649 -6.87447 -5.73452 -3.01381 0.73638 1.02945 2.57237 2.71574 3.06637 3.45213 3.50731 3.53054 3.54995 4.06756 4.26178 4.40404 4.48699 4.61063 4.64185 4.68348 4.71393 4.78871 4.86349 4.92437 4.96485 5.05762 5.09576 5.20756 5.36303 5.55335 5.56931 5.58490 5.63043 5.67051 5.69581 5.70997 5.90777 5.96280 6.15201 6.19593 6.22946 6.30619 6.34186 6.53259 6.60085 6.69115 6.77815 6.84615 6.97795 7.43245 7.69631 7.73521 8.17178 8.45955 9.57024 10.16246 10.50989 11.49656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.001881 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.201540 B =14879.342929 C =15292.292961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.262 4.262 5 C 0.134 3.866 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.149 4.149 9 C -0.090 4.090 10 C 0.516 3.484 11 O -0.533 6.533 12 N -0.723 5.723 13 C 0.140 3.860 14 H 0.092 0.908 15 C -0.133 4.133 16 C -0.111 4.111 17 C -0.096 4.096 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.120 4.120 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 14.909 24.330 32.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.130 3.870 4 C -0.283 4.283 5 C -0.023 4.023 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.152 4.152 9 C -0.131 4.131 10 C 0.302 3.698 11 O -0.409 6.409 12 N -0.375 5.375 13 C 0.036 3.964 14 H 0.110 0.890 15 C -0.171 4.171 16 C -0.149 4.149 17 C -0.115 4.115 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.159 4.159 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.837 15.804 23.545 32.004 hybrid contribution -0.389 -1.530 -0.522 1.663 sum -15.226 14.273 23.023 31.075 Atomic orbital electron populations 1.23150 0.77638 1.04522 1.01613 1.86060 1.21972 1.26227 1.87445 1.19101 0.91825 0.84715 0.91399 1.22184 1.01499 0.93184 1.11462 1.22549 0.90327 0.96952 0.92428 1.67735 1.07109 1.31881 1.15187 1.22522 1.00234 0.86128 0.92186 1.19707 0.90814 0.96393 1.08334 1.20412 1.01039 0.96114 0.95510 1.20451 0.78049 0.80478 0.90867 1.90725 1.47919 1.55948 1.46312 1.46124 1.53533 1.28300 1.09498 1.21930 0.99153 0.93678 0.81646 0.88978 1.22906 0.96936 0.99021 0.98274 1.22339 1.02131 0.93021 0.97392 1.21879 0.98145 0.96324 0.95137 0.90782 1.20794 0.92251 0.94553 0.89261 1.42364 1.12267 1.56313 1.26669 1.19290 0.97355 1.19303 1.00855 0.91214 1.24741 0.96033 1.01029 0.99398 1.69672 1.03633 1.47908 1.37069 0.86119 0.77283 0.80253 0.82575 1.20600 1.21901 1.21923 1.22396 1.00039 0.94232 0.99214 0.92375 0.92216 0.87761 0.84381 0.82552 0.82252 0.87644 0.87593 0.76745 0.91526 0.91588 0.91257 0.90951 0.96580 0.96287 0.78259 0.93626 0.91554 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.14 16 2 O -0.31 -2.88 9.76 -18.92 -0.18 -3.06 16 3 C 0.18 1.83 6.70 -38.82 -0.26 1.57 16 4 C -0.26 -2.21 9.11 -39.30 -0.36 -2.57 16 5 C 0.13 1.18 11.17 -17.59 -0.20 0.99 16 6 N -0.51 -5.48 10.36 -13.33 -0.14 -5.62 16 7 C 0.15 1.44 10.84 -17.59 -0.19 1.25 16 8 C -0.15 -1.48 4.40 -104.34 -0.46 -1.94 16 9 C -0.09 -0.72 5.61 -29.03 -0.16 -0.88 16 10 C 0.52 5.90 7.82 -10.98 -0.09 5.82 16 11 O -0.53 -8.56 15.71 5.56 0.09 -8.47 16 12 N -0.72 -7.17 5.17 -52.19 -0.27 -7.44 16 13 C 0.14 1.75 3.18 -66.27 -0.21 1.54 16 14 H 0.09 1.36 7.61 -51.93 -0.40 0.96 16 15 C -0.13 -1.76 6.59 -24.66 -0.16 -1.92 16 16 C -0.11 -1.75 6.09 -25.00 -0.15 -1.90 16 17 C -0.10 -1.51 2.96 -89.50 -0.26 -1.78 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.22 5.32 -4.04 -0.02 3.19 16 20 N -0.73 -18.74 5.45 -59.91 -0.33 -19.07 16 21 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 25 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 C -0.12 -1.48 6.19 -25.61 -0.16 -1.64 16 30 H 0.06 0.22 7.70 -51.93 -0.40 -0.18 16 31 H 0.06 0.32 7.72 -51.93 -0.40 -0.08 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 0.78 6.47 -52.49 -0.34 0.44 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.11 0.52 8.06 -51.93 -0.42 0.11 16 37 H 0.11 0.70 7.77 -51.93 -0.40 0.30 16 38 H 0.40 2.71 8.35 -40.82 -0.34 2.37 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 45 H 0.38 10.27 7.55 -40.82 -0.31 9.97 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.07 0.67 7.72 -51.93 -0.40 0.27 16 48 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -36.32 395.18 -8.66 -44.99 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.55 Total: 7.46 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.94 Total: -4.60 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.01 Total: -59.99 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.10 Total: -11.53 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.32 -8.66 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284189871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.862 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds