Wall clock time and date at job start Tue Mar 31 2020 17:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35737 * 116.99778 * 2 1 4 4 C 1.39288 * 120.84783 * 0.29725 * 3 2 1 5 5 C 1.37949 * 119.09313 * 180.23906 * 4 3 2 6 6 N 1.31979 * 120.82248 * 359.45976 * 5 4 3 7 7 C 1.31947 * 121.86277 * 0.27400 * 6 5 4 8 8 C 1.37993 * 120.82125 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.45263 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46955 * 264.99826 * 9 8 7 11 11 O 1.21281 * 120.00141 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00006 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99878 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.43468 * 325.69838 * 13 12 10 15 15 C 1.54890 * 110.48869 * 88.24321 * 13 12 10 16 16 C 1.55025 * 102.68303 * 156.51368 * 15 13 12 17 17 C 1.54269 * 104.28445 * 322.23457 * 16 15 13 18 18 H 1.08998 * 110.03061 * 264.23552 * 17 16 15 19 19 C 1.52998 * 110.07623 * 142.82285 * 17 16 15 20 20 N 1.46499 * 109.46771 * 67.81034 * 19 17 16 21 21 C 1.36937 * 119.99881 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99889 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00478 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99429 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00360 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46955 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46699 * 119.99995 * 25 23 21 28 28 H 1.48492 * 109.46958 * 239.99898 * 25 23 21 29 29 C 1.53873 * 106.59568 * 23.51375 * 17 16 15 30 30 H 1.09002 * 109.47057 * 299.99870 * 1 2 3 31 31 H 1.08994 * 109.47787 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.45537 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.59246 * 179.74019 * 5 4 3 35 35 H 1.07998 * 119.59076 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47121 * 24.99996 * 9 8 7 37 37 H 1.08999 * 109.47316 * 145.00125 * 9 8 7 38 38 H 0.96998 * 120.00141 * 0.02562 * 12 10 9 39 39 H 1.08999 * 110.75300 * 274.93208 * 15 13 12 40 40 H 1.09000 * 110.75425 * 38.30119 * 15 13 12 41 41 H 1.09004 * 110.52640 * 203.48868 * 16 15 13 42 42 H 1.09004 * 110.47944 * 80.95347 * 16 15 13 43 43 H 1.08997 * 109.46996 * 187.80860 * 19 17 16 44 44 H 1.08997 * 109.47407 * 307.81002 * 19 17 16 45 45 H 0.96996 * 120.00355 * 0.02562 * 20 19 17 46 46 H 0.97002 * 119.99773 * 179.97438 * 24 23 21 47 47 H 1.08999 * 110.03578 * 240.72006 * 29 17 16 48 48 H 1.09003 * 110.02955 * 119.28777 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 0.0062 5 6 1.9674 3.5981 0.0010 6 7 3.2864 3.6458 0.0009 7 6 4.0229 2.5511 0.0004 8 6 3.4344 1.3029 -0.0005 9 6 4.2837 0.0580 -0.0016 10 6 4.4644 -0.4256 -1.4174 11 8 3.9541 0.1812 -2.3353 12 7 5.1930 -1.5324 -1.6638 13 6 5.3690 -2.0022 -3.0402 14 1 4.4727 -1.8033 -3.6278 15 6 6.6033 -1.3283 -3.6894 16 6 6.9889 -2.3299 -4.8080 17 6 6.7331 -3.7166 -4.1821 18 1 7.6595 -4.1169 -3.7702 19 6 6.1722 -4.6732 -5.2362 20 7 7.2040 -4.9565 -6.2368 21 6 6.9297 -5.7939 -7.2850 22 1 5.9527 -6.2458 -7.3738 23 6 7.9071 -6.0621 -8.2335 24 7 9.0978 -5.5118 -8.1250 25 14 7.5330 -7.2050 -9.6629 26 1 6.1334 -7.6896 -9.5560 27 1 7.7058 -6.4706 -10.9420 28 1 8.4624 -8.3626 -9.6273 29 6 5.7032 -3.5081 -3.0581 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2244 2.3566 0.0115 34 1 1.4006 4.5174 0.0014 35 1 5.0998 2.6329 0.0008 36 1 5.2579 0.2824 0.4328 37 1 3.7932 -0.7170 0.5872 38 1 5.6008 -2.0179 -0.9297 39 1 6.3372 -0.3590 -4.1108 40 1 7.4130 -1.2274 -2.9667 41 1 8.0402 -2.2196 -5.0741 42 1 6.3572 -2.1846 -5.6844 43 1 5.8659 -5.6029 -4.7568 44 1 5.3112 -4.2141 -5.7221 45 1 8.0815 -4.5511 -6.1569 46 1 9.7810 -5.6995 -8.7875 47 1 6.1297 -3.8073 -2.1006 48 1 4.8034 -4.0879 -3.2640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284189871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:42 Heat of formation + Delta-G solvation = -65.856400 kcal Electronic energy + Delta-G solvation = -27877.447870 eV Core-core repulsion = 23931.282961 eV Total energy + Delta-G solvation = -3946.164909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82723 -40.76911 -39.25041 -39.09123 -36.44965 -34.78636 -34.31985 -32.89228 -32.19230 -30.17830 -29.75529 -28.54740 -28.05205 -26.12872 -23.96244 -23.89186 -23.70526 -21.74813 -21.39020 -20.77209 -19.32285 -19.06776 -18.17404 -18.13029 -17.48586 -16.80459 -16.72520 -16.20493 -16.12073 -15.93307 -15.78224 -15.41464 -15.18851 -15.16883 -14.86710 -14.65473 -14.41241 -14.25845 -14.13062 -13.53560 -13.34531 -13.19453 -12.91971 -12.84410 -12.73087 -12.49448 -12.41249 -12.13437 -12.11086 -12.10271 -11.75428 -11.74446 -11.56715 -11.35142 -10.96055 -10.91887 -10.51830 -10.10740 -9.98531 -9.72175 -8.98751 -7.95613 -5.23806 0.08949 0.35741 1.46220 1.47307 1.57370 1.71625 2.17713 2.24372 2.55675 2.86858 3.37685 3.48318 3.59574 3.63654 3.66599 3.84300 3.88520 3.90915 4.08752 4.16795 4.22845 4.32717 4.33530 4.43594 4.44526 4.50874 4.52404 4.62791 4.65683 4.68247 4.70174 4.76727 4.79067 4.92904 4.96604 5.05203 5.08339 5.10972 5.15585 5.27367 5.39618 5.48229 5.55458 5.58448 5.63721 6.19572 6.27460 6.65612 7.03739 7.33489 7.36185 8.10873 8.34265 9.28193 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.001881 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.201540 B =14879.342929 C =15292.292961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.166 3.834 4 C -0.264 4.264 5 C 0.123 3.877 6 N -0.535 5.535 7 C 0.132 3.868 8 C -0.165 4.165 9 C -0.081 4.081 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.148 3.852 14 H 0.066 0.934 15 C -0.121 4.121 16 C -0.110 4.110 17 C -0.087 4.087 18 H 0.076 0.924 19 C 0.156 3.844 20 N -0.744 5.744 21 C -0.245 4.245 22 H 0.073 0.927 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.974 3.026 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.291 1.291 29 C -0.107 4.107 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.162 0.838 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.418 0.582 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.022 0.978 44 H 0.013 0.987 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.100 0.900 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.763 14.410 26.379 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.112 3.888 4 C -0.285 4.285 5 C -0.033 4.033 6 N -0.247 5.247 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.121 4.121 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.360 5.360 13 C 0.043 3.957 14 H 0.084 0.916 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.106 4.106 18 H 0.094 0.906 19 C 0.030 3.970 20 N -0.387 5.387 21 C -0.377 4.377 22 H 0.091 0.909 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.803 3.197 26 H -0.191 1.191 27 H -0.221 1.221 28 H -0.218 1.218 29 C -0.145 4.145 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.180 0.820 34 H 0.199 0.801 35 H 0.193 0.807 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.256 0.744 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.030 0.970 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.119 0.881 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.807 15.280 25.653 33.785 hybrid contribution -0.185 -1.351 -1.146 1.781 sum -15.992 13.930 24.508 32.410 Atomic orbital electron populations 1.23405 0.75986 1.05844 1.02492 1.86025 1.23795 1.26169 1.87430 1.19408 0.92371 0.85393 0.91621 1.22471 1.02775 0.92634 1.10603 1.23025 0.90090 0.98255 0.91909 1.67742 1.08171 1.32616 1.16213 1.22858 1.01138 0.86181 0.92217 1.19969 0.91345 0.97067 1.08490 1.20452 1.02771 0.95712 0.93145 1.21081 0.76956 0.79959 0.91800 1.90710 1.50018 1.57552 1.48178 1.45929 1.53134 1.28044 1.08942 1.21611 0.97541 0.93772 0.82818 0.91608 1.22795 0.97920 0.97545 0.97662 1.22252 1.00836 0.94256 0.97497 1.21776 0.99075 0.94840 0.94926 0.90603 1.20980 0.91016 0.95739 0.89262 1.42575 1.12970 1.55853 1.27285 1.19684 0.97384 1.19095 1.01510 0.90859 1.25580 0.96052 1.03112 1.02257 1.69823 1.04526 1.49607 1.38037 0.85065 0.77644 0.78053 0.78959 1.19137 1.22115 1.21811 1.22286 0.99079 0.93926 0.99256 0.90515 0.92273 0.86322 0.82007 0.80128 0.80697 0.84234 0.85900 0.74404 0.92848 0.89510 0.92401 0.93567 0.96013 0.96956 0.79331 0.94006 0.88124 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 113.37 1.12 1.27 16 2 O -0.32 -5.66 9.76 -90.60 -0.88 -6.55 16 3 C 0.17 3.15 6.70 22.76 0.15 3.31 16 4 C -0.26 -4.16 9.11 22.45 0.20 -3.95 16 5 C 0.12 2.07 11.17 84.60 0.95 3.02 16 6 N -0.54 -11.32 10.36 -196.08 -2.03 -13.35 16 7 C 0.13 2.51 10.84 84.62 0.92 3.43 16 8 C -0.17 -3.09 4.40 -19.68 -0.09 -3.18 16 9 C -0.08 -1.09 5.61 29.10 0.16 -0.93 16 10 C 0.51 10.95 7.82 87.66 0.69 11.64 16 11 O -0.58 -18.76 15.71 -3.03 -0.05 -18.80 16 12 N -0.71 -12.26 5.17 -437.43 -2.26 -14.52 16 13 C 0.15 3.49 3.18 46.07 0.15 3.63 16 14 H 0.07 1.95 7.61 -2.39 -0.02 1.93 16 15 C -0.12 -3.10 6.59 31.93 0.21 -2.89 16 16 C -0.11 -3.52 6.09 31.72 0.19 -3.33 16 17 C -0.09 -2.67 2.96 -10.07 -0.03 -2.70 16 18 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 19 C 0.16 6.30 5.32 86.38 0.46 6.76 16 20 N -0.74 -38.58 5.45 -343.46 -1.87 -40.45 16 21 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 25 Si 0.97 46.98 29.55 68.60 2.03 49.00 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 29 C -0.11 -2.38 6.19 31.32 0.19 -2.19 16 30 H 0.08 0.43 7.70 -2.39 -0.02 0.41 16 31 H 0.06 0.56 7.72 -2.39 -0.02 0.54 16 32 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.16 1.56 6.47 -2.91 -0.02 1.54 16 34 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.14 0.89 8.06 -2.39 -0.02 0.87 16 37 H 0.12 1.26 7.77 -2.39 -0.02 1.24 16 38 H 0.42 4.03 8.35 -92.71 -0.77 3.26 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.69 7.76 -2.38 -0.02 1.68 16 43 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.01 0.52 8.01 -2.39 -0.02 0.50 16 45 H 0.37 20.51 7.55 -92.71 -0.70 19.81 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.10 1.61 7.72 -2.39 -0.02 1.59 16 48 H 0.07 1.68 7.67 -2.39 -0.02 1.66 16 Total: -1.00 -80.51 395.18 1.29 -79.21 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.50 Total: 28.75 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.58 Total: -3.38 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.88 Total: -128.24 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.93 Total: -25.35 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -80.51 1.29 -79.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284189871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.357 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds