Wall clock time and date at job start Tue Mar 31 2020 17:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35910 * 117.00346 * 2 1 4 4 C 1.39132 * 120.47879 * 179.97438 * 3 2 1 5 5 C 1.38533 * 118.37670 * 179.75136 * 4 3 2 6 6 C 1.38254 * 119.22042 * 0.52728 * 5 4 3 7 7 C 1.50703 * 119.55959 * 179.73158 * 6 5 4 8 8 C 1.50697 * 109.47046 * 124.73295 * 7 6 5 9 9 O 1.21281 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99872 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00207 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47257 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.05786 * 306.41713 * 12 11 10 14 14 C 1.53879 * 110.03196 * 67.83445 * 12 11 10 15 15 C 1.54267 * 106.60134 * 119.28084 * 14 12 11 16 16 C 1.54893 * 104.19282 * 23.60896 * 15 14 12 17 17 H 1.09003 * 110.91041 * 80.44593 * 16 15 14 18 18 N 1.46499 * 110.75633 * 203.74048 * 16 15 14 19 19 C 1.36935 * 119.99938 * 268.33095 * 18 16 15 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 16 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19 27 27 C 1.54270 * 110.03237 * 184.99531 * 12 11 10 28 28 N 1.31850 * 120.88552 * 359.46166 * 6 5 4 29 29 C 1.31841 * 121.78103 * 0.27269 * 28 6 5 30 30 H 1.09000 * 109.47600 * 300.00324 * 1 2 3 31 31 H 1.09000 * 109.47106 * 60.00383 * 1 2 3 32 32 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.80910 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.39058 * 180.26152 * 5 4 3 35 35 H 1.08999 * 109.46502 * 4.72888 * 7 6 5 36 36 H 1.08999 * 109.47081 * 244.73567 * 7 6 5 37 37 H 0.97004 * 119.99857 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47260 * 59.99379 * 11 10 8 39 39 H 1.08999 * 109.47225 * 299.99578 * 11 10 8 40 40 H 1.08994 * 110.03346 * 238.57245 * 14 12 11 41 41 H 1.09005 * 110.02974 * 359.94800 * 14 12 11 42 42 H 1.08998 * 110.48796 * 264.93589 * 15 14 12 43 43 H 1.08998 * 110.48646 * 142.28496 * 15 14 12 44 44 H 0.96999 * 119.99984 * 88.33030 * 18 16 15 45 45 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.48043 * 98.42991 * 27 12 11 47 47 H 1.09002 * 110.60152 * 335.84626 * 27 12 11 48 48 H 1.07994 * 119.66013 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5518 -0.0048 6 6 3.2079 3.6720 0.0007 7 6 3.8344 5.0427 0.0011 8 6 3.3024 5.8385 -1.1628 9 8 2.4945 5.3415 -1.9185 10 7 3.7253 7.1022 -1.3645 11 6 3.2078 7.8761 -2.4956 12 6 3.8439 9.2675 -2.4952 13 1 3.7026 9.7429 -1.5246 14 6 5.3450 9.1609 -2.8165 15 6 5.5772 9.9681 -4.1105 16 6 4.4005 10.9747 -4.1465 17 1 4.5982 11.8277 -3.4973 18 7 4.1385 11.4182 -5.5179 19 6 4.7526 12.5418 -6.0032 20 1 5.4267 13.1035 -5.3736 21 6 4.5048 12.9618 -7.3029 22 7 5.0946 14.0421 -7.7691 23 14 3.3330 11.9946 -8.3896 24 1 1.9542 12.5198 -8.2212 25 1 3.7458 12.1337 -9.8092 26 1 3.3676 10.5614 -8.0021 27 6 3.2163 10.1358 -3.6052 28 7 1.8944 3.5573 0.0003 29 6 1.3002 2.3805 -0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.0432 0.4029 0.0005 34 1 5.0932 2.6551 -0.0088 35 1 4.9165 4.9475 -0.0880 36 1 3.5901 5.5535 0.9325 37 1 4.3717 7.4996 -0.7602 38 1 2.1256 7.9716 -2.4058 39 1 3.4513 7.3652 -3.4271 40 1 5.9322 9.5845 -2.0017 41 1 5.6204 8.1177 -2.9717 42 1 5.5447 9.3121 -4.9803 43 1 6.5296 10.4961 -4.0650 44 1 3.5300 10.9160 -6.0822 45 1 4.9212 14.3358 -8.6772 46 1 2.4459 10.7862 -3.1910 47 1 2.8011 9.5086 -4.3941 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316658359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:17 Heat of formation + Delta-G solvation = -34.316161 kcal Electronic energy + Delta-G solvation = -27285.252508 eV Core-core repulsion = 23340.455286 eV Total energy + Delta-G solvation = -3944.797221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12125 -39.82695 -38.61507 -38.03474 -34.97657 -33.43405 -32.78355 -32.75791 -31.05423 -29.44024 -28.49472 -27.78382 -27.16592 -24.46265 -23.71693 -22.69705 -22.52508 -20.69061 -19.85481 -19.41011 -18.59093 -17.63388 -17.51633 -17.06535 -16.65490 -16.28342 -15.98601 -15.48979 -15.19159 -14.87428 -14.60063 -14.54064 -14.32186 -13.94798 -13.43813 -13.31477 -13.22477 -13.01967 -12.73563 -12.58767 -12.42956 -12.32969 -12.30084 -12.11481 -11.79027 -11.33968 -10.96009 -10.83559 -10.62091 -10.57223 -10.37478 -10.23545 -10.12079 -9.98004 -9.85213 -9.67099 -9.56955 -9.10645 -8.89235 -8.73350 -7.24437 -5.76310 -3.11398 0.72409 0.93046 2.58867 2.71526 3.01425 3.39299 3.42777 3.46949 3.49265 3.91307 4.25040 4.27589 4.48344 4.60348 4.63130 4.66793 4.71833 4.81457 4.87422 4.89184 4.96808 5.01181 5.04281 5.08213 5.22436 5.44896 5.50367 5.53991 5.63009 5.66796 5.68640 5.73680 5.83706 5.96118 6.01425 6.08796 6.13270 6.24309 6.29668 6.39104 6.44582 6.63173 6.75169 6.80784 6.99630 7.40786 7.67591 8.00761 8.17254 8.43403 9.22101 9.94986 10.14855 11.42030 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.001761 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.554416 B =15898.348435 C =16568.486328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.313 6.313 3 C 0.072 3.928 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.105 3.895 7 C -0.088 4.088 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.730 5.730 11 C 0.128 3.872 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.120 4.120 15 C -0.144 4.144 16 C 0.182 3.818 17 H 0.065 0.935 18 N -0.745 5.745 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.127 4.127 28 N -0.420 5.420 29 C 0.026 3.974 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -27.121 22.442 35.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.225 6.225 3 C 0.025 3.975 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.034 4.034 7 C -0.128 4.128 8 C 0.300 3.700 9 O -0.399 6.399 10 N -0.383 5.383 11 C 0.005 3.995 12 C -0.119 4.119 13 H 0.094 0.906 14 C -0.158 4.158 15 C -0.184 4.184 16 C 0.072 3.928 17 H 0.083 0.917 18 N -0.386 5.386 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.166 4.166 28 N -0.129 5.129 29 C -0.133 4.133 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.992 -26.706 21.824 34.848 hybrid contribution -0.208 -1.094 -0.680 1.305 sum -5.200 -27.800 21.144 35.312 Atomic orbital electron populations 1.23138 0.77851 1.04396 1.01777 1.86064 1.21789 1.26107 1.88587 1.20111 0.93329 0.85786 0.98289 1.20867 0.91677 0.98776 1.02214 1.21798 1.01301 0.91632 0.99713 1.20439 0.89306 0.94266 0.99365 1.20536 1.01161 0.91889 0.99226 1.20264 0.81816 0.81754 0.86196 1.90745 1.32695 1.69792 1.46662 1.46030 1.46835 1.14097 1.31302 1.21518 0.98357 0.90813 0.88831 1.21949 0.96046 0.93972 0.99975 0.90601 1.22210 0.94588 1.00162 0.98860 1.23035 1.00958 0.98602 0.95840 1.21144 0.91050 0.93882 0.86759 0.91721 1.42749 1.54531 1.30996 1.10325 1.19103 1.21005 1.00375 0.96901 0.89201 1.24675 0.99924 0.97470 0.97101 1.69702 1.46733 1.24945 1.16825 0.86560 0.81509 0.79931 0.80606 1.21072 1.21775 1.20290 1.22646 0.98945 0.97938 0.97053 1.67282 1.11446 1.26340 1.07854 1.22880 1.00520 0.86925 1.03015 0.92337 0.92218 0.87853 0.83934 0.83941 0.87287 0.87140 0.76653 0.91658 0.91412 0.92202 0.92304 0.92031 0.92109 0.80585 0.93091 0.91502 0.91548 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.58 10.51 -19.46 -0.20 -2.78 16 3 C 0.07 0.67 6.71 -39.07 -0.26 0.40 16 4 C -0.11 -0.89 10.13 -39.14 -0.40 -1.28 16 5 C -0.12 -0.97 9.70 -39.47 -0.38 -1.35 16 6 C 0.11 1.05 5.76 -82.58 -0.48 0.57 16 7 C -0.09 -0.66 6.10 -29.03 -0.18 -0.84 16 8 C 0.51 5.86 7.76 -10.99 -0.09 5.77 16 9 O -0.52 -8.51 15.33 5.56 0.09 -8.43 16 10 N -0.73 -6.98 5.34 -60.30 -0.32 -7.30 16 11 C 0.13 1.51 4.69 -4.05 -0.02 1.49 16 12 C -0.10 -1.16 2.96 -89.50 -0.27 -1.43 16 13 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.12 -1.45 6.19 -25.61 -0.16 -1.60 16 15 C -0.14 -2.37 6.51 -25.07 -0.16 -2.53 16 16 C 0.18 3.37 3.56 -65.94 -0.23 3.14 16 17 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 18 N -0.74 -17.52 5.03 -51.50 -0.26 -17.78 16 19 C -0.24 -6.86 10.44 -15.06 -0.16 -7.02 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.40 13.97 55.49 0.78 -28.63 16 23 Si 0.88 22.33 27.74 -169.99 -4.71 17.61 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 27 C -0.13 -1.89 5.98 -25.07 -0.15 -2.04 16 28 N -0.42 -5.07 9.21 -9.35 -0.09 -5.15 16 29 C 0.03 0.26 10.22 -17.37 -0.18 0.08 16 30 H 0.06 0.21 7.68 -51.93 -0.40 -0.19 16 31 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.14 0.65 7.94 -52.49 -0.42 0.23 16 35 H 0.11 0.46 7.86 -51.93 -0.41 0.05 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.61 8.35 -40.82 -0.34 2.27 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.67 7.61 -51.93 -0.40 0.28 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.36 8.43 5.62 -40.82 -0.23 8.20 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 48 H 0.16 1.23 6.32 -52.49 -0.33 0.90 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -36.99 392.51 -8.58 -45.57 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.56 Total: 6.48 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.21 Total: -5.51 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.11 Total: -58.86 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.12 Total: -11.21 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.99 -8.58 -45.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316658359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.257 kcal (2) G-P(sol) polarization free energy of solvation -36.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds