Wall clock time and date at job start Tue Mar 31 2020 17:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35910 * 117.00346 * 2 1 4 4 C 1.39132 * 120.47879 * 179.97438 * 3 2 1 5 5 C 1.38533 * 118.37670 * 179.75136 * 4 3 2 6 6 C 1.38254 * 119.22042 * 0.52728 * 5 4 3 7 7 C 1.50703 * 119.55959 * 179.73158 * 6 5 4 8 8 C 1.50697 * 109.47046 * 124.73295 * 7 6 5 9 9 O 1.21281 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99872 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00207 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47257 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.05786 * 306.41713 * 12 11 10 14 14 C 1.53879 * 110.03196 * 67.83445 * 12 11 10 15 15 C 1.54267 * 106.60134 * 119.28084 * 14 12 11 16 16 C 1.54893 * 104.19282 * 23.60896 * 15 14 12 17 17 H 1.09003 * 110.91041 * 80.44593 * 16 15 14 18 18 N 1.46499 * 110.75633 * 203.74048 * 16 15 14 19 19 C 1.36935 * 119.99938 * 268.33095 * 18 16 15 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 16 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19 27 27 C 1.54270 * 110.03237 * 184.99531 * 12 11 10 28 28 N 1.31850 * 120.88552 * 359.46166 * 6 5 4 29 29 C 1.31841 * 121.78103 * 0.27269 * 28 6 5 30 30 H 1.09000 * 109.47600 * 300.00324 * 1 2 3 31 31 H 1.09000 * 109.47106 * 60.00383 * 1 2 3 32 32 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.80910 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.39058 * 180.26152 * 5 4 3 35 35 H 1.08999 * 109.46502 * 4.72888 * 7 6 5 36 36 H 1.08999 * 109.47081 * 244.73567 * 7 6 5 37 37 H 0.97004 * 119.99857 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47260 * 59.99379 * 11 10 8 39 39 H 1.08999 * 109.47225 * 299.99578 * 11 10 8 40 40 H 1.08994 * 110.03346 * 238.57245 * 14 12 11 41 41 H 1.09005 * 110.02974 * 359.94800 * 14 12 11 42 42 H 1.08998 * 110.48796 * 264.93589 * 15 14 12 43 43 H 1.08998 * 110.48646 * 142.28496 * 15 14 12 44 44 H 0.96999 * 119.99984 * 88.33030 * 18 16 15 45 45 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.48043 * 98.42991 * 27 12 11 47 47 H 1.09002 * 110.60152 * 335.84626 * 27 12 11 48 48 H 1.07994 * 119.66013 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5518 -0.0048 6 6 3.2079 3.6720 0.0007 7 6 3.8344 5.0427 0.0011 8 6 3.3024 5.8385 -1.1628 9 8 2.4945 5.3415 -1.9185 10 7 3.7253 7.1022 -1.3645 11 6 3.2078 7.8761 -2.4956 12 6 3.8439 9.2675 -2.4952 13 1 3.7026 9.7429 -1.5246 14 6 5.3450 9.1609 -2.8165 15 6 5.5772 9.9681 -4.1105 16 6 4.4005 10.9747 -4.1465 17 1 4.5982 11.8277 -3.4973 18 7 4.1385 11.4182 -5.5179 19 6 4.7526 12.5418 -6.0032 20 1 5.4267 13.1035 -5.3736 21 6 4.5048 12.9618 -7.3029 22 7 5.0946 14.0421 -7.7691 23 14 3.3330 11.9946 -8.3896 24 1 1.9542 12.5198 -8.2212 25 1 3.7458 12.1337 -9.8092 26 1 3.3676 10.5614 -8.0021 27 6 3.2163 10.1358 -3.6052 28 7 1.8944 3.5573 0.0003 29 6 1.3002 2.3805 -0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.0432 0.4029 0.0005 34 1 5.0932 2.6551 -0.0088 35 1 4.9165 4.9475 -0.0880 36 1 3.5901 5.5535 0.9325 37 1 4.3717 7.4996 -0.7602 38 1 2.1256 7.9716 -2.4058 39 1 3.4513 7.3652 -3.4271 40 1 5.9322 9.5845 -2.0017 41 1 5.6204 8.1177 -2.9717 42 1 5.5447 9.3121 -4.9803 43 1 6.5296 10.4961 -4.0650 44 1 3.5300 10.9160 -6.0822 45 1 4.9212 14.3358 -8.6772 46 1 2.4459 10.7862 -3.1910 47 1 2.8011 9.5086 -4.3941 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316658359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:16 Heat of formation + Delta-G solvation = -61.442038 kcal Electronic energy + Delta-G solvation = -27286.428774 eV Core-core repulsion = 23340.455286 eV Total energy + Delta-G solvation = -3945.973488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74160 -40.67996 -39.53625 -38.93672 -36.36459 -34.94043 -33.49410 -33.38471 -32.91950 -30.52838 -29.32030 -28.75225 -28.00647 -25.65636 -24.54321 -24.29044 -23.20202 -21.75240 -21.11710 -20.53401 -19.56263 -19.14537 -18.27903 -17.83013 -17.42903 -16.96983 -16.81704 -16.66167 -16.28026 -16.10132 -15.86490 -15.19733 -15.07009 -14.99069 -14.73476 -14.36944 -14.23510 -14.07072 -14.05575 -13.92183 -13.39492 -13.12753 -13.11431 -12.89964 -12.77019 -12.68106 -12.33155 -12.30352 -12.11558 -11.94470 -11.84145 -11.68050 -11.49966 -11.23382 -10.94283 -10.88315 -10.64615 -10.34341 -9.99517 -9.35388 -9.27408 -8.02562 -5.34529 0.11153 0.31178 1.37140 1.39183 1.46445 1.78023 2.21513 2.26668 2.47662 2.83598 3.28328 3.33657 3.56812 3.66104 3.69918 3.73955 3.80710 3.96140 4.12467 4.16870 4.31846 4.33191 4.38351 4.42189 4.48341 4.55952 4.61406 4.63003 4.66889 4.68364 4.74036 4.75944 4.81088 4.92951 5.00101 5.07577 5.11266 5.15212 5.23566 5.40030 5.51370 5.53368 5.57082 5.60488 5.78836 6.20249 6.22983 6.69017 7.03999 7.08693 7.40823 7.87316 8.04559 9.19029 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.001761 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.554416 B =15898.348435 C =16568.486328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.064 3.936 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.082 3.918 7 C -0.080 4.080 8 C 0.510 3.490 9 O -0.580 6.580 10 N -0.715 5.715 11 C 0.136 3.864 12 C -0.084 4.084 13 H 0.103 0.897 14 C -0.107 4.107 15 C -0.141 4.141 16 C 0.166 3.834 17 H 0.056 0.944 18 N -0.751 5.751 19 C -0.228 4.228 20 H 0.059 0.941 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.256 1.256 27 C -0.121 4.121 28 N -0.458 5.458 29 C 0.004 3.996 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.179 0.821 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.418 0.582 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.363 0.637 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -29.358 24.546 38.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.017 3.983 4 C -0.145 4.145 5 C -0.138 4.138 6 C -0.057 4.057 7 C -0.120 4.120 8 C 0.297 3.703 9 O -0.459 6.459 10 N -0.369 5.369 11 C 0.011 3.989 12 C -0.103 4.103 13 H 0.121 0.879 14 C -0.144 4.144 15 C -0.182 4.182 16 C 0.058 3.942 17 H 0.074 0.926 18 N -0.393 5.393 19 C -0.359 4.359 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.780 3.220 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.181 1.181 27 C -0.160 4.160 28 N -0.168 5.168 29 C -0.154 4.154 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.256 0.744 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.574 -28.974 24.012 37.907 hybrid contribution -0.301 -0.396 -1.251 1.347 sum -4.874 -29.370 22.760 37.475 Atomic orbital electron populations 1.23380 0.76318 1.05961 1.02202 1.86046 1.23485 1.25783 1.88493 1.20283 0.94045 0.85812 0.98208 1.21272 0.91545 0.99967 1.01671 1.22190 1.02933 0.90711 0.97938 1.20956 0.89061 0.96057 0.99669 1.20660 1.03051 0.90187 0.98091 1.20982 0.80848 0.81965 0.86459 1.90729 1.35278 1.71014 1.48894 1.45858 1.46705 1.13566 1.30734 1.21259 0.97804 0.90832 0.88962 1.21821 0.95212 0.93334 0.99905 0.87880 1.22136 0.95092 1.00219 0.97002 1.22896 0.99184 0.98138 0.97940 1.21467 0.93845 0.94633 0.84244 0.92561 1.42800 1.54290 1.29834 1.12366 1.19088 1.19509 1.00909 0.96382 0.92302 1.25463 1.02433 0.98874 0.98850 1.69877 1.49161 1.27230 1.17198 0.85450 0.79103 0.79487 0.77974 1.20469 1.22349 1.18097 1.22557 0.97668 0.97841 0.97919 1.67253 1.13043 1.27317 1.09184 1.23054 1.01189 0.87150 1.03991 0.91461 0.92290 0.85716 0.81927 0.80345 0.83243 0.84974 0.74422 0.92829 0.93356 0.89569 0.91005 0.93627 0.93403 0.80375 0.93443 0.90839 0.92218 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 113.37 1.11 1.25 16 2 O -0.33 -5.17 10.51 -92.54 -0.97 -6.14 16 3 C 0.06 1.15 6.71 22.60 0.15 1.30 16 4 C -0.12 -1.73 10.13 22.56 0.23 -1.50 16 5 C -0.12 -1.53 9.70 22.34 0.22 -1.31 16 6 C 0.08 1.47 5.76 42.56 0.25 1.72 16 7 C -0.08 -0.93 6.10 29.10 0.18 -0.76 16 8 C 0.51 10.47 7.76 87.66 0.68 11.15 16 9 O -0.58 -18.59 15.33 -3.03 -0.05 -18.63 16 10 N -0.72 -11.37 5.34 -463.08 -2.47 -13.85 16 11 C 0.14 2.89 4.69 86.38 0.40 3.29 16 12 C -0.08 -1.67 2.96 -10.07 -0.03 -1.70 16 13 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 14 C -0.11 -2.20 6.19 31.32 0.19 -2.00 16 15 C -0.14 -4.48 6.51 31.67 0.21 -4.27 16 16 C 0.17 6.04 3.56 46.28 0.16 6.20 16 17 H 0.06 2.13 8.09 -2.39 -0.02 2.11 16 18 N -0.75 -35.19 5.03 -316.85 -1.59 -36.79 16 19 C -0.23 -13.06 10.44 84.04 0.88 -12.18 16 20 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 21 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.98 -63.69 13.97 21.65 0.30 -63.39 16 23 Si 0.95 46.57 27.74 68.60 1.90 48.47 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 26 H -0.26 -11.49 6.52 99.48 0.65 -10.84 16 27 C -0.12 -3.38 5.98 31.67 0.19 -3.19 16 28 N -0.46 -10.92 9.21 -183.48 -1.69 -12.61 16 29 C 0.00 0.09 10.22 84.81 0.87 0.96 16 30 H 0.07 0.46 7.68 -2.39 -0.02 0.44 16 31 H 0.06 0.52 7.68 -2.39 -0.02 0.50 16 32 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.18 0.84 7.94 -2.91 -0.02 0.82 16 35 H 0.15 0.48 7.86 -2.39 -0.02 0.46 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 3.50 8.35 -92.71 -0.77 2.73 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.36 7.61 -2.38 -0.02 1.34 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.36 16.60 5.62 -92.71 -0.52 16.08 16 45 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.06 1.76 7.73 -2.39 -0.02 1.75 16 48 H 0.16 2.71 6.32 -2.91 -0.02 2.70 16 Total: -1.00 -84.78 392.51 1.20 -83.58 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.38 Total: 23.81 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 6.15 Total: -4.46 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.46 Total: -126.63 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.02 Total: -24.78 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Total: -84.78 1.20 -83.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316658359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.140 kcal (2) G-P(sol) polarization free energy of solvation -84.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds