Wall clock time and date at job start Tue Mar 31 2020 17:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35910 * 116.99862 * 2 1 4 4 C 1.39148 * 120.46903 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.36962 * 179.72517 * 4 3 2 6 6 C 1.38254 * 119.22475 * 0.50157 * 5 4 3 7 7 C 1.50693 * 119.55925 * 179.76968 * 6 5 4 8 8 C 1.50699 * 109.47205 * 124.72328 * 7 6 5 9 9 O 1.21278 * 120.00060 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00360 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.62927 * 359.97438 * 10 8 7 12 12 C 1.53193 * 108.77515 * 126.40936 * 11 10 8 13 13 C 1.53032 * 109.31086 * 54.63776 * 12 11 10 14 14 C 1.53039 * 109.53897 * 298.62771 * 13 12 11 15 15 H 1.08997 * 109.52970 * 301.40339 * 14 13 12 16 16 C 1.53005 * 109.49663 * 181.31566 * 14 13 12 17 17 N 1.46505 * 109.46904 * 175.16485 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 C 1.46927 * 120.63570 * 179.97438 * 10 8 7 27 27 N 1.31850 * 120.88386 * 359.48559 * 6 5 4 28 28 C 1.31848 * 121.78104 * 0.26376 * 27 6 5 29 29 H 1.08999 * 109.47600 * 300.00203 * 1 2 3 30 30 H 1.08998 * 109.47266 * 60.00183 * 1 2 3 31 31 H 1.09006 * 109.47605 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.81639 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.39138 * 180.26146 * 5 4 3 34 34 H 1.09001 * 109.47278 * 4.72031 * 7 6 5 35 35 H 1.09001 * 109.47153 * 244.72223 * 7 6 5 36 36 H 1.09001 * 109.58567 * 246.20410 * 11 10 8 37 37 H 1.09005 * 109.58329 * 6.62223 * 11 10 8 38 38 H 1.08999 * 109.49179 * 174.58615 * 12 11 10 39 39 H 1.08995 * 109.49564 * 294.64989 * 12 11 10 40 40 H 1.09001 * 109.45892 * 178.61076 * 13 12 11 41 41 H 1.09000 * 109.46304 * 58.65449 * 13 12 11 42 42 H 1.09003 * 109.46946 * 55.17244 * 16 14 13 43 43 H 1.08993 * 109.47679 * 295.16787 * 16 14 13 44 44 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 45 45 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.58280 * 113.80015 * 26 10 8 47 47 H 1.09003 * 109.58283 * 353.37895 * 26 10 8 48 48 H 1.08002 * 119.66012 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4349 1.2952 -0.0005 5 6 4.0181 2.5518 -0.0064 6 6 3.2079 3.6721 -0.0008 7 6 3.8344 5.0426 -0.0019 8 6 3.3017 5.8376 -1.1659 9 8 2.4932 5.3401 -1.9207 10 7 3.7236 7.1015 -1.3683 11 6 4.7022 7.7182 -0.4622 12 6 5.8743 8.2519 -1.2918 13 6 5.3409 9.1923 -2.3749 14 6 4.4023 8.4210 -3.3055 15 1 4.9398 7.5859 -3.7547 16 6 3.8953 9.3539 -4.4072 17 7 3.0901 8.5890 -5.3626 18 6 2.5279 9.2173 -6.4416 19 1 2.6784 10.2766 -6.5886 20 6 1.7697 8.4913 -7.3500 21 7 1.5868 7.2003 -7.1712 22 14 1.0092 9.3469 -8.8262 23 1 2.0828 9.9502 -9.6560 24 1 0.2533 8.3582 -9.6362 25 1 0.0864 10.4127 -8.3594 26 6 3.2137 7.8890 -2.4991 27 7 1.8944 3.5574 -0.0003 28 6 1.3002 2.3804 0.0002 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 4.0433 0.4029 -0.0005 33 1 5.0932 2.6551 -0.0112 34 1 4.9166 4.9474 -0.0917 35 1 3.5908 5.5541 0.9293 36 1 4.2326 8.5401 0.0781 37 1 5.0650 6.9729 0.2457 38 1 6.5608 8.7961 -0.6433 39 1 6.3986 7.4184 -1.7589 40 1 6.1750 9.5928 -2.9510 41 1 4.7958 10.0124 -1.9075 42 1 4.7445 9.8011 -4.9239 43 1 3.2841 10.1404 -3.9646 44 1 2.9552 7.6375 -5.2308 45 1 1.0566 6.6931 -7.8058 46 1 2.6226 8.7250 -2.1250 47 1 2.5944 7.2565 -3.1351 48 1 0.2215 2.3264 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317158490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:54 Heat of formation + Delta-G solvation = -25.244459 kcal Electronic energy + Delta-G solvation = -28473.078494 eV Core-core repulsion = 24528.674651 eV Total energy + Delta-G solvation = -3944.403843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91623 -39.92943 -38.43006 -37.31724 -34.85444 -32.99972 -32.55906 -32.34127 -31.60518 -29.76982 -28.43930 -27.43954 -25.45014 -25.05096 -23.53492 -23.08978 -22.33854 -21.32844 -20.06303 -18.84284 -18.34742 -17.43479 -17.07364 -16.72441 -16.31491 -16.07075 -15.36299 -15.25520 -14.69820 -14.60165 -14.40732 -14.36746 -14.17689 -13.64443 -13.45599 -13.23714 -13.14308 -12.92648 -12.85845 -12.57690 -12.31894 -12.26389 -12.13064 -12.03330 -11.56536 -11.41579 -11.04127 -10.96731 -10.77674 -10.58185 -10.35693 -10.22357 -9.95869 -9.86981 -9.60011 -9.52887 -9.38181 -8.79891 -8.50361 -8.36731 -6.83418 -5.66086 -2.95867 0.95531 1.16087 2.89326 2.93135 3.13526 3.49803 3.53501 3.55407 3.67953 4.14787 4.47193 4.47913 4.60681 4.65598 4.74708 4.80490 4.87118 4.92283 4.93482 5.05045 5.08993 5.20794 5.25284 5.27587 5.29928 5.39915 5.41743 5.49594 5.66807 5.71316 5.76922 5.86784 5.89209 5.90754 6.03134 6.15527 6.18824 6.26935 6.30875 6.45985 6.63010 6.75703 6.83847 6.94652 6.96814 7.63083 7.77009 7.92207 8.47311 8.51462 9.62264 10.20906 10.55125 11.56081 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.002908 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.576414 B = 9627.124850 C =11992.256380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.071 3.929 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.107 3.893 7 C -0.085 4.085 8 C 0.514 3.486 9 O -0.511 6.511 10 N -0.615 5.615 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.073 0.927 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.123 3.877 27 N -0.418 5.418 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -9.159 22.842 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.024 3.976 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.032 4.032 7 C -0.126 4.126 8 C 0.301 3.699 9 O -0.385 6.385 10 N -0.350 5.350 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.127 4.127 15 H 0.091 0.909 16 C 0.032 3.968 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.001 3.999 27 N -0.127 5.127 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.120 0.880 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.496 -8.788 22.303 24.836 hybrid contribution -0.175 -0.447 -0.881 1.003 sum 6.321 -9.235 21.422 24.169 Atomic orbital electron populations 1.23129 0.77919 1.04280 1.01840 1.86050 1.21746 1.26149 1.88663 1.20099 0.93314 0.85760 0.98446 1.20839 0.91655 0.98686 1.02368 1.21771 1.01191 0.91664 0.99919 1.20471 0.89328 0.94288 0.99153 1.20563 1.00838 0.91845 0.99304 1.20223 0.82073 0.81394 0.86235 1.90798 1.32408 1.68952 1.46351 1.48169 1.44000 1.13434 1.29431 1.21727 0.89673 0.98160 0.92089 1.21914 0.97188 0.99956 0.98150 1.21514 0.99192 0.97791 0.96539 1.21681 0.96030 0.99111 0.95836 0.90893 1.20634 0.93839 0.93107 0.89184 1.42412 1.59951 1.08821 1.26579 1.19159 1.24701 0.93039 1.00447 0.91306 1.24761 1.01162 0.95700 0.99317 1.69671 1.44305 1.05836 1.37947 0.86282 0.78973 0.78199 0.82800 1.21354 1.21723 1.21308 1.21670 0.96001 0.95280 0.86962 1.67295 1.11422 1.26305 1.07693 1.22889 1.00540 0.86917 1.02819 0.92411 0.92110 0.87954 0.84026 0.84074 0.87581 0.87437 0.91414 0.90197 0.90968 0.91527 0.91608 0.91790 0.96156 0.96306 0.78072 0.93474 0.91839 0.87967 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.32 10.51 -19.46 -0.20 -3.52 16 3 C 0.07 0.84 6.71 -39.07 -0.26 0.58 16 4 C -0.11 -1.16 10.13 -39.13 -0.40 -1.55 16 5 C -0.13 -1.31 9.70 -39.47 -0.38 -1.69 16 6 C 0.11 1.38 5.76 -82.58 -0.48 0.90 16 7 C -0.09 -0.92 4.45 -29.04 -0.13 -1.05 16 8 C 0.51 8.13 7.63 -10.99 -0.08 8.05 16 9 O -0.51 -10.91 14.75 5.56 0.08 -10.83 16 10 N -0.62 -8.75 2.97 -172.77 -0.51 -9.27 16 11 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 12 C -0.13 -1.26 6.08 -26.62 -0.16 -1.42 16 13 C -0.11 -1.37 5.17 -26.69 -0.14 -1.50 16 14 C -0.11 -1.78 2.38 -90.51 -0.22 -1.99 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.16 3.31 5.65 -4.04 -0.02 3.28 16 17 N -0.73 -19.43 5.38 -59.90 -0.32 -19.75 16 18 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -29.58 13.06 55.49 0.72 -28.86 16 22 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.12 2.14 5.51 -3.72 -0.02 2.12 16 27 N -0.42 -6.35 9.21 -9.35 -0.09 -6.43 16 28 C 0.03 0.36 10.22 -17.37 -0.18 0.18 16 29 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 30 H 0.06 0.43 7.68 -51.93 -0.40 0.04 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.14 0.99 7.94 -52.49 -0.42 0.57 16 34 H 0.11 0.79 7.42 -51.93 -0.39 0.40 16 35 H 0.11 0.93 7.94 -51.93 -0.41 0.52 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.39 10.97 6.89 -40.82 -0.28 10.68 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 2.26 6.20 -51.93 -0.32 1.94 16 48 H 0.16 1.69 6.32 -52.49 -0.33 1.35 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -38.04 387.42 -8.70 -46.74 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.45 Total: 7.55 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.74 Total: 0.35 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.20 Total: -64.31 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.12 Total: -14.35 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.04 -8.70 -46.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.496 kcal (2) G-P(sol) polarization free energy of solvation -38.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds