Wall clock time and date at job start Tue Mar 31 2020 17:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35910 * 116.99862 * 2 1 4 4 C 1.39148 * 120.46903 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.36962 * 179.72517 * 4 3 2 6 6 C 1.38254 * 119.22475 * 0.50157 * 5 4 3 7 7 C 1.50693 * 119.55925 * 179.76968 * 6 5 4 8 8 C 1.50699 * 109.47205 * 124.72328 * 7 6 5 9 9 O 1.21278 * 120.00060 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00360 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.62927 * 359.97438 * 10 8 7 12 12 C 1.53193 * 108.77515 * 126.40936 * 11 10 8 13 13 C 1.53032 * 109.31086 * 54.63776 * 12 11 10 14 14 C 1.53039 * 109.53897 * 298.62771 * 13 12 11 15 15 H 1.08997 * 109.52970 * 301.40339 * 14 13 12 16 16 C 1.53005 * 109.49663 * 181.31566 * 14 13 12 17 17 N 1.46505 * 109.46904 * 175.16485 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 C 1.46927 * 120.63570 * 179.97438 * 10 8 7 27 27 N 1.31850 * 120.88386 * 359.48559 * 6 5 4 28 28 C 1.31848 * 121.78104 * 0.26376 * 27 6 5 29 29 H 1.08999 * 109.47600 * 300.00203 * 1 2 3 30 30 H 1.08998 * 109.47266 * 60.00183 * 1 2 3 31 31 H 1.09006 * 109.47605 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.81639 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.39138 * 180.26146 * 5 4 3 34 34 H 1.09001 * 109.47278 * 4.72031 * 7 6 5 35 35 H 1.09001 * 109.47153 * 244.72223 * 7 6 5 36 36 H 1.09001 * 109.58567 * 246.20410 * 11 10 8 37 37 H 1.09005 * 109.58329 * 6.62223 * 11 10 8 38 38 H 1.08999 * 109.49179 * 174.58615 * 12 11 10 39 39 H 1.08995 * 109.49564 * 294.64989 * 12 11 10 40 40 H 1.09001 * 109.45892 * 178.61076 * 13 12 11 41 41 H 1.09000 * 109.46304 * 58.65449 * 13 12 11 42 42 H 1.09003 * 109.46946 * 55.17244 * 16 14 13 43 43 H 1.08993 * 109.47679 * 295.16787 * 16 14 13 44 44 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 45 45 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.58280 * 113.80015 * 26 10 8 47 47 H 1.09003 * 109.58283 * 353.37895 * 26 10 8 48 48 H 1.08002 * 119.66012 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4349 1.2952 -0.0005 5 6 4.0181 2.5518 -0.0064 6 6 3.2079 3.6721 -0.0008 7 6 3.8344 5.0426 -0.0019 8 6 3.3017 5.8376 -1.1659 9 8 2.4932 5.3401 -1.9207 10 7 3.7236 7.1015 -1.3683 11 6 4.7022 7.7182 -0.4622 12 6 5.8743 8.2519 -1.2918 13 6 5.3409 9.1923 -2.3749 14 6 4.4023 8.4210 -3.3055 15 1 4.9398 7.5859 -3.7547 16 6 3.8953 9.3539 -4.4072 17 7 3.0901 8.5890 -5.3626 18 6 2.5279 9.2173 -6.4416 19 1 2.6784 10.2766 -6.5886 20 6 1.7697 8.4913 -7.3500 21 7 1.5868 7.2003 -7.1712 22 14 1.0092 9.3469 -8.8262 23 1 2.0828 9.9502 -9.6560 24 1 0.2533 8.3582 -9.6362 25 1 0.0864 10.4127 -8.3594 26 6 3.2137 7.8890 -2.4991 27 7 1.8944 3.5574 -0.0003 28 6 1.3002 2.3804 0.0002 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 4.0433 0.4029 -0.0005 33 1 5.0932 2.6551 -0.0112 34 1 4.9166 4.9474 -0.0917 35 1 3.5908 5.5541 0.9293 36 1 4.2326 8.5401 0.0781 37 1 5.0650 6.9729 0.2457 38 1 6.5608 8.7961 -0.6433 39 1 6.3986 7.4184 -1.7589 40 1 6.1750 9.5928 -2.9510 41 1 4.7958 10.0124 -1.9075 42 1 4.7445 9.8011 -4.9239 43 1 3.2841 10.1404 -3.9646 44 1 2.9552 7.6375 -5.2308 45 1 1.0566 6.6931 -7.8058 46 1 2.6226 8.7250 -2.1250 47 1 2.5944 7.2565 -3.1351 48 1 0.2215 2.3264 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317158490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:53 Heat of formation + Delta-G solvation = -52.867365 kcal Electronic energy + Delta-G solvation = -28474.276313 eV Core-core repulsion = 24528.674651 eV Total energy + Delta-G solvation = -3945.601662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80529 -41.02372 -39.31168 -38.54473 -36.58188 -34.52838 -33.40409 -33.34704 -33.01467 -31.44023 -29.31976 -28.23911 -27.10891 -26.16338 -24.84949 -24.36372 -23.24553 -22.61897 -21.39526 -19.90564 -19.18179 -19.12248 -18.32806 -17.83383 -17.32064 -16.82131 -16.72307 -16.42404 -16.31086 -15.77957 -15.44454 -15.36760 -15.14296 -15.06870 -14.98274 -14.38816 -14.14063 -14.09011 -13.92532 -13.86799 -13.68008 -13.18963 -13.06242 -12.95792 -12.82626 -12.78003 -12.58418 -12.32963 -12.20886 -12.02845 -11.92244 -11.78214 -11.50191 -11.27967 -10.96528 -10.79761 -10.63211 -10.33999 -9.55212 -9.36057 -9.03017 -7.95896 -5.26767 0.10143 0.31157 1.42962 1.47937 1.54181 1.74890 2.04908 2.22245 2.54100 2.78818 3.30636 3.36613 3.63862 3.64986 3.72413 3.82101 3.94354 3.96529 4.02912 4.18095 4.23386 4.30397 4.31803 4.36957 4.38643 4.48322 4.53201 4.56341 4.64662 4.68175 4.71793 4.78969 4.88816 4.94058 4.95189 4.97525 5.04941 5.09707 5.19306 5.27639 5.37367 5.45899 5.51787 5.54819 5.62708 6.18751 6.24062 6.54162 7.04620 7.29358 7.32569 8.06612 8.28696 9.27382 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.002908 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.576414 B = 9627.124850 C =11992.256380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.065 3.935 4 C -0.116 4.116 5 C -0.117 4.117 6 C 0.080 3.920 7 C -0.073 4.073 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.612 5.612 11 C 0.098 3.902 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.093 4.093 15 H 0.050 0.950 16 C 0.156 3.844 17 N -0.749 5.749 18 C -0.248 4.248 19 H 0.080 0.920 20 C -0.082 4.082 21 N -0.973 5.973 22 Si 0.979 3.021 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.130 3.870 27 N -0.461 5.461 28 C 0.002 3.998 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.167 0.833 33 H 0.182 0.818 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.027 0.973 43 H 0.024 0.976 44 H 0.369 0.631 45 H 0.250 0.750 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 -8.187 25.072 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.017 3.983 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.059 4.059 7 C -0.113 4.113 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.112 4.112 15 H 0.069 0.931 16 C 0.030 3.970 17 N -0.392 5.392 18 C -0.379 4.379 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.807 3.193 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.202 1.202 26 C 0.007 3.993 27 N -0.171 5.171 28 C -0.156 4.156 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.330 -7.750 24.593 27.421 hybrid contribution -1.035 -0.725 -1.532 1.986 sum 8.295 -8.475 23.061 25.932 Atomic orbital electron populations 1.23376 0.76394 1.05998 1.02086 1.86035 1.23413 1.25621 1.88494 1.20272 0.94122 0.85722 0.98157 1.21283 0.91415 0.99974 1.01578 1.22193 1.02953 0.90628 0.97863 1.20973 0.89081 0.96103 0.99778 1.20685 1.02814 0.90142 0.97637 1.21248 0.81052 0.81701 0.86762 1.90773 1.35694 1.70551 1.49164 1.48285 1.44418 1.12999 1.28826 1.22190 0.88573 0.99738 0.91788 1.21919 0.97478 0.99503 0.97575 1.21519 0.98287 0.98151 0.96576 1.21527 0.96242 0.98077 0.95393 0.93105 1.20872 0.93178 0.93582 0.89390 1.42690 1.60677 1.08500 1.27289 1.19660 1.23865 0.93599 1.00821 0.90221 1.25705 1.02440 0.96409 1.02783 1.69881 1.45699 1.07671 1.39126 0.85129 0.78215 0.76999 0.78927 1.19908 1.22318 1.20167 1.21261 0.95843 0.94408 0.87790 1.67240 1.13233 1.27480 1.09124 1.23044 1.01171 0.87274 1.04128 0.91348 0.92757 0.85460 0.81513 0.80054 0.83135 0.84696 0.89802 0.86145 0.86945 0.91867 0.90766 0.90643 0.95484 0.95783 0.79901 0.94180 0.91838 0.93905 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.34 16 2 O -0.32 -6.82 10.51 -92.53 -0.97 -7.80 16 3 C 0.06 1.55 6.71 22.60 0.15 1.70 16 4 C -0.12 -2.31 10.13 22.56 0.23 -2.09 16 5 C -0.12 -2.19 9.70 22.34 0.22 -1.97 16 6 C 0.08 2.00 5.76 42.56 0.25 2.24 16 7 C -0.07 -1.40 4.45 29.10 0.13 -1.27 16 8 C 0.50 15.99 7.63 87.66 0.67 16.66 16 9 O -0.58 -26.68 14.75 -3.02 -0.04 -26.72 16 10 N -0.61 -16.94 2.97 -818.92 -2.43 -19.38 16 11 C 0.10 1.45 6.34 86.36 0.55 2.00 16 12 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 13 C -0.11 -2.32 5.17 30.62 0.16 -2.16 16 14 C -0.09 -3.11 2.38 -10.72 -0.03 -3.13 16 15 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 16 C 0.16 6.55 5.65 86.38 0.49 7.03 16 17 N -0.75 -41.42 5.38 -343.44 -1.85 -43.27 16 18 C -0.25 -14.74 9.99 84.04 0.84 -13.90 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 21 N -0.97 -64.76 13.06 21.65 0.28 -64.48 16 22 Si 0.98 48.74 29.55 68.60 2.03 50.76 16 23 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.13 4.75 5.51 86.35 0.48 5.23 16 27 N -0.46 -14.54 9.21 -183.49 -1.69 -16.23 16 28 C 0.00 0.05 10.22 84.80 0.87 0.92 16 29 H 0.07 0.82 7.68 -2.39 -0.02 0.80 16 30 H 0.05 0.84 7.68 -2.39 -0.02 0.82 16 31 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.18 1.74 7.94 -2.91 -0.02 1.72 16 34 H 0.15 1.47 7.42 -2.39 -0.02 1.45 16 35 H 0.14 1.83 7.94 -2.39 -0.02 1.81 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 0.86 5.93 -2.38 -0.01 0.85 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.37 22.52 6.89 -92.71 -0.64 21.88 16 45 H 0.25 16.11 8.31 -92.70 -0.77 15.34 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.04 2.08 6.20 -2.39 -0.01 2.06 16 48 H 0.16 3.85 6.32 -2.91 -0.02 3.83 16 Total: -1.00 -91.47 387.42 2.41 -89.07 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.33 Total: 31.62 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.76 Total: 6.42 kcal Atomic # 7 Polarization: -137.66 SS G_CDS: -5.69 Total: -143.35 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.02 Total: -34.52 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.76 kcal Total: -91.47 2.41 -89.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.198 kcal (2) G-P(sol) polarization free energy of solvation -91.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds