Wall clock time and date at job start Tue Mar 31 2020 17:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 117.00408 * 2 1 4 4 C 1.39128 * 120.47641 * 179.72121 * 3 2 1 5 5 C 1.38532 * 118.37712 * 180.27043 * 4 3 2 6 6 C 1.38261 * 119.22353 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.56033 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47142 * 124.97705 * 7 6 5 9 9 O 1.21285 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63058 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.77439 * 233.58383 * 11 10 8 13 13 C 1.53038 * 109.31323 * 305.36250 * 12 11 10 14 14 C 1.53041 * 109.53828 * 61.36397 * 13 12 11 15 15 H 1.09004 * 109.49626 * 58.58669 * 14 13 12 16 16 C 1.52998 * 109.49791 * 178.65143 * 14 13 12 17 17 N 1.46500 * 109.47403 * 185.00314 * 16 14 13 18 18 C 1.36936 * 120.00223 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99914 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47232 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47007 * 120.00562 * 22 20 18 25 25 H 1.48497 * 109.47047 * 240.00075 * 22 20 18 26 26 C 1.46925 * 120.63348 * 179.71800 * 10 8 7 27 27 N 1.31844 * 120.87960 * 359.97438 * 6 5 4 28 28 C 1.31838 * 121.78675 * 359.97438 * 27 6 5 29 29 H 1.09003 * 109.47791 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47231 * 300.00056 * 1 2 3 31 31 H 1.09006 * 109.46966 * 60.00173 * 1 2 3 32 32 H 1.07997 * 120.81629 * 0.25314 * 4 3 2 33 33 H 1.08003 * 120.39175 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47070 * 244.97890 * 7 6 5 35 35 H 1.09003 * 109.47055 * 4.97523 * 7 6 5 36 36 H 1.09003 * 109.58266 * 353.37055 * 11 10 8 37 37 H 1.09000 * 109.58402 * 113.65165 * 11 10 8 38 38 H 1.08996 * 109.49464 * 65.31240 * 12 11 10 39 39 H 1.08999 * 109.49490 * 185.41401 * 12 11 10 40 40 H 1.09001 * 109.46201 * 181.38680 * 13 12 11 41 41 H 1.09007 * 109.46078 * 301.36341 * 13 12 11 42 42 H 1.09006 * 109.47470 * 305.00414 * 16 14 13 43 43 H 1.09002 * 109.47266 * 65.00249 * 16 14 13 44 44 H 0.97002 * 119.99503 * 359.97438 * 17 16 14 45 45 H 0.97006 * 119.99884 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58867 * 246.20341 * 26 10 8 47 47 H 1.09007 * 109.58554 * 6.62858 * 26 10 8 48 48 H 1.08004 * 119.66411 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4348 1.2952 0.0058 5 6 4.0181 2.5517 0.0113 6 6 3.2079 3.6720 0.0114 7 6 3.8345 5.0426 0.0180 8 6 3.3073 5.8415 -1.1460 9 8 2.5016 5.3468 -1.9057 10 7 3.7301 7.1060 -1.3421 11 6 4.7053 7.7192 -0.4299 12 6 4.1357 9.0463 0.0811 13 6 3.7517 9.9250 -1.1116 14 6 2.6724 9.2225 -1.9385 15 1 1.8028 9.0273 -1.3108 16 6 2.2652 10.1164 -3.1115 17 7 1.1501 9.4978 -3.8328 18 6 0.6130 10.1209 -4.9275 19 1 1.0116 11.0680 -5.2595 20 6 -0.4433 9.5344 -5.6112 21 7 -0.9288 8.3798 -5.2069 22 14 -1.1755 10.3840 -7.1051 23 1 -0.4567 11.6600 -7.3507 24 1 -1.0396 9.5022 -8.2921 25 1 -2.6127 10.6655 -6.8595 26 6 3.2300 7.8954 -2.4758 27 7 1.8945 3.5573 0.0058 28 6 1.3002 2.3805 -0.0006 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 4.0432 0.4029 0.0063 33 1 5.0932 2.6549 0.0164 34 1 3.5865 5.5510 0.9497 35 1 4.9170 4.9476 -0.0671 36 1 4.8880 7.0516 0.4121 37 1 5.6392 7.9006 -0.9618 38 1 3.2524 8.8527 0.6896 39 1 4.8875 9.5574 0.6823 40 1 3.3690 10.8798 -0.7510 41 1 4.6303 10.0975 -1.7334 42 1 1.9578 11.0922 -2.7353 43 1 3.1120 10.2378 -3.7869 44 1 0.7923 8.6469 -3.5348 45 1 -1.6671 7.9702 -5.6845 46 1 4.0455 8.0932 -3.1715 47 1 2.4389 7.3440 -2.9842 48 1 0.2216 2.3264 -0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317158491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:57 Heat of formation + Delta-G solvation = -25.238151 kcal Electronic energy + Delta-G solvation = -28490.805595 eV Core-core repulsion = 24546.402026 eV Total energy + Delta-G solvation = -3944.403569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91323 -39.91955 -38.42094 -37.30315 -34.84566 -32.99468 -32.55910 -32.33770 -31.59127 -29.75770 -28.43415 -27.42939 -25.44695 -25.04165 -23.53421 -23.08854 -22.32644 -21.32151 -20.04878 -18.84547 -18.34297 -17.45439 -17.02269 -16.74713 -16.30209 -16.06534 -15.33758 -15.32906 -14.69246 -14.58221 -14.38967 -14.32624 -14.01079 -13.79880 -13.50377 -13.18880 -13.13188 -12.95483 -12.85434 -12.52482 -12.33408 -12.28362 -12.13017 -11.98219 -11.56864 -11.41119 -11.03233 -10.96338 -10.79816 -10.57513 -10.32433 -10.22028 -9.91404 -9.86897 -9.59850 -9.52139 -9.37335 -8.80387 -8.50439 -8.36170 -6.82619 -5.65831 -2.95538 0.95480 1.16395 2.88979 2.93184 3.14112 3.49258 3.53925 3.56924 3.68797 4.16137 4.46447 4.48366 4.60804 4.65939 4.75958 4.80682 4.88673 4.91993 4.95992 5.05332 5.09122 5.22222 5.25112 5.28058 5.30468 5.39825 5.41520 5.50503 5.67285 5.71179 5.77582 5.87069 5.89696 5.90959 6.03660 6.16369 6.20345 6.27727 6.31100 6.46471 6.63204 6.75551 6.84646 6.95792 6.97126 7.63026 7.78401 7.94033 8.47228 8.51660 9.62634 10.21528 10.55734 11.56409 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.002938 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.964445 B = 9527.188802 C =11946.082347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.071 3.929 4 C -0.110 4.110 5 C -0.127 4.127 6 C 0.106 3.894 7 C -0.085 4.085 8 C 0.514 3.486 9 O -0.511 6.511 10 N -0.616 5.616 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.074 0.926 16 C 0.160 3.840 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.928 5.928 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.123 3.877 27 N -0.416 5.416 28 C 0.029 3.971 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.944 -12.183 17.849 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.227 6.227 3 C 0.023 3.977 4 C -0.136 4.136 5 C -0.147 4.147 6 C -0.033 4.033 7 C -0.126 4.126 8 C 0.301 3.699 9 O -0.385 6.385 10 N -0.351 5.351 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.126 4.126 15 H 0.092 0.908 16 C 0.032 3.968 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.001 3.999 27 N -0.125 5.125 28 C -0.130 4.130 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.220 0.780 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.030 -11.806 17.292 24.661 hybrid contribution -0.327 -0.402 -0.764 0.923 sum 12.703 -12.208 16.528 24.157 Atomic orbital electron populations 1.23139 0.77851 1.04281 1.01932 1.86043 1.21794 1.26147 1.88668 1.20105 0.93306 0.85779 0.98468 1.20821 0.91649 0.98651 1.02514 1.21759 1.01112 0.91673 1.00154 1.20481 0.89357 0.94264 0.99175 1.20564 1.00767 0.91824 0.99409 1.20226 0.81836 0.81585 0.86289 1.90799 1.32182 1.69294 1.46242 1.48174 1.44447 1.13140 1.29293 1.21722 0.91709 0.95037 0.93160 1.21911 1.01347 0.95632 0.98333 1.21516 0.98882 0.98392 0.96223 1.21766 0.97928 0.95083 0.97861 0.90790 1.20634 0.91085 0.94130 0.90925 1.42434 1.37216 1.25258 1.32880 1.19247 1.11551 1.02764 1.03614 0.91211 1.24765 0.99299 0.97254 0.99704 1.69696 1.28428 1.17618 1.41936 0.86141 0.78836 0.78467 0.82893 1.20617 1.21914 1.21940 1.21774 0.99770 0.91507 0.86855 1.67312 1.11391 1.26305 1.07500 1.22925 1.00626 0.86870 1.02608 0.87952 0.92353 0.92067 0.84075 0.84128 0.87367 0.87654 0.90219 0.91436 0.91468 0.90990 0.91611 0.91829 0.96163 0.96343 0.78040 0.93586 0.91860 0.87956 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.51 -19.45 -0.20 -3.53 16 3 C 0.07 0.84 6.71 -39.07 -0.26 0.57 16 4 C -0.11 -1.14 10.13 -39.14 -0.40 -1.54 16 5 C -0.13 -1.29 9.70 -39.46 -0.38 -1.68 16 6 C 0.11 1.37 5.76 -82.58 -0.48 0.90 16 7 C -0.09 -0.92 4.45 -29.04 -0.13 -1.05 16 8 C 0.51 8.12 7.63 -10.99 -0.08 8.04 16 9 O -0.51 -10.90 14.74 5.55 0.08 -10.82 16 10 N -0.62 -8.74 2.97 -172.47 -0.51 -9.25 16 11 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 12 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 13 C -0.11 -1.38 5.16 -26.69 -0.14 -1.52 16 14 C -0.11 -1.79 2.38 -90.26 -0.22 -2.01 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.16 3.32 5.65 -4.04 -0.02 3.29 16 17 N -0.73 -19.49 5.38 -59.91 -0.32 -19.81 16 18 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -29.60 13.06 55.49 0.72 -28.87 16 22 Si 0.91 23.23 29.55 -169.99 -5.02 18.20 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 C 0.12 2.14 5.55 -3.47 -0.02 2.12 16 27 N -0.42 -6.46 9.21 -9.35 -0.09 -6.55 16 28 C 0.03 0.38 10.22 -17.37 -0.18 0.21 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 31 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.14 0.93 7.95 -52.48 -0.42 0.51 16 34 H 0.11 0.97 7.69 -51.93 -0.40 0.57 16 35 H 0.11 0.74 7.67 -51.93 -0.40 0.35 16 36 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.39 11.02 6.92 -40.82 -0.28 10.74 16 45 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.10 2.27 6.23 -51.92 -0.32 1.94 16 48 H 0.16 1.78 6.32 -52.48 -0.33 1.45 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -38.13 387.51 -8.70 -46.83 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.45 Total: 7.61 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.74 Total: 0.34 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.20 Total: -64.48 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.12 Total: -14.35 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.13 -8.70 -46.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.590 kcal (2) G-P(sol) polarization free energy of solvation -38.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds