Wall clock time and date at job start Tue Mar 31 2020 17:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 117.00408 * 2 1 4 4 C 1.39128 * 120.47641 * 179.72121 * 3 2 1 5 5 C 1.38532 * 118.37712 * 180.27043 * 4 3 2 6 6 C 1.38261 * 119.22353 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.56033 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47142 * 124.97705 * 7 6 5 9 9 O 1.21285 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63058 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.77439 * 233.58383 * 11 10 8 13 13 C 1.53038 * 109.31323 * 305.36250 * 12 11 10 14 14 C 1.53041 * 109.53828 * 61.36397 * 13 12 11 15 15 H 1.09004 * 109.49626 * 58.58669 * 14 13 12 16 16 C 1.52998 * 109.49791 * 178.65143 * 14 13 12 17 17 N 1.46500 * 109.47403 * 185.00314 * 16 14 13 18 18 C 1.36936 * 120.00223 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99914 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47232 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47007 * 120.00562 * 22 20 18 25 25 H 1.48497 * 109.47047 * 240.00075 * 22 20 18 26 26 C 1.46925 * 120.63348 * 179.71800 * 10 8 7 27 27 N 1.31844 * 120.87960 * 359.97438 * 6 5 4 28 28 C 1.31838 * 121.78675 * 359.97438 * 27 6 5 29 29 H 1.09003 * 109.47791 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47231 * 300.00056 * 1 2 3 31 31 H 1.09006 * 109.46966 * 60.00173 * 1 2 3 32 32 H 1.07997 * 120.81629 * 0.25314 * 4 3 2 33 33 H 1.08003 * 120.39175 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47070 * 244.97890 * 7 6 5 35 35 H 1.09003 * 109.47055 * 4.97523 * 7 6 5 36 36 H 1.09003 * 109.58266 * 353.37055 * 11 10 8 37 37 H 1.09000 * 109.58402 * 113.65165 * 11 10 8 38 38 H 1.08996 * 109.49464 * 65.31240 * 12 11 10 39 39 H 1.08999 * 109.49490 * 185.41401 * 12 11 10 40 40 H 1.09001 * 109.46201 * 181.38680 * 13 12 11 41 41 H 1.09007 * 109.46078 * 301.36341 * 13 12 11 42 42 H 1.09006 * 109.47470 * 305.00414 * 16 14 13 43 43 H 1.09002 * 109.47266 * 65.00249 * 16 14 13 44 44 H 0.97002 * 119.99503 * 359.97438 * 17 16 14 45 45 H 0.97006 * 119.99884 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58867 * 246.20341 * 26 10 8 47 47 H 1.09007 * 109.58554 * 6.62858 * 26 10 8 48 48 H 1.08004 * 119.66411 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4348 1.2952 0.0058 5 6 4.0181 2.5517 0.0113 6 6 3.2079 3.6720 0.0114 7 6 3.8345 5.0426 0.0180 8 6 3.3073 5.8415 -1.1460 9 8 2.5016 5.3468 -1.9057 10 7 3.7301 7.1060 -1.3421 11 6 4.7053 7.7192 -0.4299 12 6 4.1357 9.0463 0.0811 13 6 3.7517 9.9250 -1.1116 14 6 2.6724 9.2225 -1.9385 15 1 1.8028 9.0273 -1.3108 16 6 2.2652 10.1164 -3.1115 17 7 1.1501 9.4978 -3.8328 18 6 0.6130 10.1209 -4.9275 19 1 1.0116 11.0680 -5.2595 20 6 -0.4433 9.5344 -5.6112 21 7 -0.9288 8.3798 -5.2069 22 14 -1.1755 10.3840 -7.1051 23 1 -0.4567 11.6600 -7.3507 24 1 -1.0396 9.5022 -8.2921 25 1 -2.6127 10.6655 -6.8595 26 6 3.2300 7.8954 -2.4758 27 7 1.8945 3.5573 0.0058 28 6 1.3002 2.3805 -0.0006 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 4.0432 0.4029 0.0063 33 1 5.0932 2.6549 0.0164 34 1 3.5865 5.5510 0.9497 35 1 4.9170 4.9476 -0.0671 36 1 4.8880 7.0516 0.4121 37 1 5.6392 7.9006 -0.9618 38 1 3.2524 8.8527 0.6896 39 1 4.8875 9.5574 0.6823 40 1 3.3690 10.8798 -0.7510 41 1 4.6303 10.0975 -1.7334 42 1 1.9578 11.0922 -2.7353 43 1 3.1120 10.2378 -3.7869 44 1 0.7923 8.6469 -3.5348 45 1 -1.6671 7.9702 -5.6845 46 1 4.0455 8.0932 -3.1715 47 1 2.4389 7.3440 -2.9842 48 1 0.2216 2.3264 -0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317158491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:56 Heat of formation + Delta-G solvation = -53.067913 kcal Electronic energy + Delta-G solvation = -28492.012384 eV Core-core repulsion = 24546.402026 eV Total energy + Delta-G solvation = -3945.610358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80450 -41.01498 -39.30681 -38.53763 -36.58279 -34.52533 -33.40436 -33.34661 -33.01640 -31.43067 -29.32166 -28.24386 -27.11223 -26.15502 -24.85520 -24.36610 -23.23484 -22.62722 -21.39193 -19.91234 -19.18446 -19.12049 -18.33724 -17.82298 -17.30091 -16.83233 -16.72605 -16.42037 -16.39507 -15.70247 -15.41702 -15.34090 -15.17634 -15.05770 -14.94880 -14.52051 -14.12208 -14.03007 -13.94321 -13.88282 -13.66740 -13.20386 -13.03915 -12.95495 -12.87977 -12.79488 -12.58802 -12.34027 -12.13628 -12.00637 -11.93162 -11.78736 -11.50553 -11.28787 -10.99271 -10.79442 -10.63196 -10.32188 -9.54809 -9.36129 -9.03244 -7.96192 -5.27212 0.10183 0.31962 1.42953 1.45682 1.55841 1.74311 2.06257 2.21880 2.53676 2.79318 3.31479 3.36538 3.63430 3.64711 3.72781 3.82310 3.92170 3.96179 4.04504 4.18031 4.23446 4.30304 4.31041 4.37048 4.38392 4.48503 4.51411 4.57446 4.64835 4.67917 4.72009 4.78608 4.88184 4.93950 4.94471 4.98103 5.04246 5.09635 5.18144 5.27083 5.36991 5.46194 5.52175 5.54261 5.62955 6.18174 6.23940 6.54421 7.06367 7.28986 7.32965 8.06100 8.28270 9.27520 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.002938 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.964445 B = 9527.188802 C =11946.082347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.065 3.935 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.079 3.921 7 C -0.073 4.073 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.094 4.094 15 H 0.045 0.955 16 C 0.157 3.843 17 N -0.750 5.750 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.083 4.083 21 N -0.973 5.973 22 Si 0.979 3.021 23 H -0.260 1.260 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.131 3.869 27 N -0.464 5.464 28 C 0.000 4.000 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.369 0.631 45 H 0.249 0.751 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.615 -11.502 19.555 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.018 3.982 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.060 4.060 7 C -0.113 4.113 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.346 5.346 11 C -0.022 4.022 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.114 4.114 15 H 0.064 0.936 16 C 0.030 3.970 17 N -0.392 5.392 18 C -0.376 4.376 19 H 0.099 0.901 20 C -0.275 4.275 21 N -0.624 5.624 22 Si 0.807 3.193 23 H -0.184 1.184 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.007 3.993 27 N -0.174 5.174 28 C -0.158 4.158 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.187 0.813 33 H 0.203 0.797 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.765 -11.065 19.050 27.684 hybrid contribution -1.432 -0.602 -1.269 2.005 sum 15.333 -11.666 17.781 26.218 Atomic orbital electron populations 1.23369 0.76461 1.05987 1.02011 1.86029 1.23318 1.25604 1.88500 1.20275 0.94201 0.85597 0.98163 1.21288 0.91234 1.00057 1.01526 1.22202 1.02982 0.90448 0.97739 1.20997 0.88989 0.96194 0.99802 1.20695 1.03089 0.90049 0.97473 1.21255 0.80787 0.81954 0.86807 1.90774 1.35444 1.70922 1.49069 1.48292 1.44746 1.12674 1.28848 1.22189 0.90939 0.95449 0.93638 1.21923 1.02131 0.95460 0.97152 1.21515 0.97439 0.98641 0.96838 1.21619 0.98654 0.94630 0.96452 0.93608 1.20869 0.89392 0.94736 0.91987 1.42717 1.38646 1.24815 1.33021 1.19733 1.11150 1.02856 1.03901 0.90137 1.25716 1.00318 0.98152 1.03279 1.69901 1.29202 1.19650 1.43681 0.84989 0.77723 0.77935 0.78608 1.18431 1.22128 1.21988 1.21371 0.98217 0.91419 0.88287 1.67241 1.13477 1.27566 1.09106 1.23014 1.01084 0.87382 1.04285 0.85357 0.91561 0.92809 0.81306 0.79720 0.85152 0.82675 0.86324 0.89076 0.92596 0.86891 0.90976 0.90238 0.95627 0.95502 0.79945 0.94197 0.91251 0.93978 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.35 16 2 O -0.32 -6.82 10.51 -92.52 -0.97 -7.79 16 3 C 0.07 1.56 6.71 22.60 0.15 1.71 16 4 C -0.11 -2.20 10.13 22.55 0.23 -1.97 16 5 C -0.11 -2.03 9.70 22.35 0.22 -1.81 16 6 C 0.08 1.98 5.76 42.56 0.25 2.23 16 7 C -0.07 -1.41 4.45 29.10 0.13 -1.28 16 8 C 0.50 15.97 7.63 87.66 0.67 16.64 16 9 O -0.58 -26.72 14.74 -3.04 -0.04 -26.77 16 10 N -0.61 -16.89 2.97 -817.98 -2.43 -19.31 16 11 C 0.10 1.44 6.34 86.36 0.55 1.99 16 12 C -0.13 -1.97 6.08 30.67 0.19 -1.79 16 13 C -0.11 -2.35 5.16 30.62 0.16 -2.19 16 14 C -0.09 -3.21 2.38 -10.56 -0.03 -3.23 16 15 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 16 C 0.16 6.60 5.65 86.38 0.49 7.09 16 17 N -0.75 -41.70 5.38 -343.45 -1.85 -43.55 16 18 C -0.24 -14.59 9.99 84.03 0.84 -13.75 16 19 H 0.08 4.53 7.83 -2.92 -0.02 4.50 16 20 C -0.08 -5.11 5.50 84.86 0.47 -4.65 16 21 N -0.97 -65.11 13.06 21.65 0.28 -64.82 16 22 Si 0.98 48.89 29.55 68.60 2.03 50.92 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 26 C 0.13 4.73 5.55 86.52 0.48 5.21 16 27 N -0.46 -15.13 9.21 -183.48 -1.69 -16.82 16 28 C 0.00 0.01 10.22 84.81 0.87 0.88 16 29 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 0.87 7.68 -2.39 -0.02 0.85 16 31 H 0.05 0.87 7.67 -2.38 -0.02 0.86 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.19 1.49 7.95 -2.91 -0.02 1.46 16 34 H 0.13 1.90 7.69 -2.39 -0.02 1.88 16 35 H 0.16 1.34 7.67 -2.39 -0.02 1.32 16 36 H 0.12 0.87 5.93 -2.39 -0.01 0.86 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.37 22.72 6.92 -92.71 -0.64 22.08 16 45 H 0.25 16.10 8.31 -92.70 -0.77 15.33 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.04 2.04 6.23 -2.38 -0.01 2.03 16 48 H 0.16 4.04 6.32 -2.91 -0.02 4.02 16 Total: -1.00 -92.47 387.51 2.42 -90.05 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.32 Total: 31.67 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.76 Total: 6.43 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -5.68 Total: -144.50 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.02 Total: -34.56 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -92.47 2.42 -90.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317158491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.984 kcal (2) G-P(sol) polarization free energy of solvation -92.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds