Wall clock time and date at job start Tue Mar 31 2020 17:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35748 * 116.99587 * 2 1 4 4 C 1.39213 * 120.81686 * 0.02562 * 3 2 1 5 5 C 1.38307 * 119.28681 * 179.97438 * 4 3 2 6 6 N 1.31607 * 120.97600 * 359.97438 * 5 4 3 7 7 C 1.32799 * 121.78054 * 0.02562 * 6 5 4 8 8 C 1.48185 * 119.70031 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00066 * 170.58487 * 8 7 6 10 10 N 1.34777 * 119.99855 * 350.31371 * 8 7 6 11 11 C 1.46921 * 120.62936 * 353.63325 * 10 8 7 12 12 C 1.53192 * 108.77301 * 233.58269 * 11 10 8 13 13 C 1.53038 * 109.31565 * 305.36783 * 12 11 10 14 14 C 1.53040 * 109.53712 * 61.36471 * 13 12 11 15 15 C 1.46925 * 120.62964 * 173.35305 * 10 8 7 16 16 H 1.08994 * 109.58656 * 246.20606 * 15 10 8 17 17 C 1.53004 * 109.58746 * 6.62484 * 15 10 8 18 18 C 1.52998 * 109.47225 * 176.16757 * 17 15 10 19 19 N 1.46501 * 109.47082 * 173.74205 * 18 17 15 20 20 C 1.36929 * 119.99861 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00573 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00348 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99587 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00489 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46624 * 90.00412 * 24 22 20 26 26 H 1.48503 * 109.47187 * 210.00261 * 24 22 20 27 27 H 1.48492 * 109.47266 * 330.00761 * 24 22 20 28 28 C 1.39109 * 120.60236 * 0.26535 * 7 6 5 29 29 H 1.08992 * 109.47699 * 60.00047 * 1 2 3 30 30 H 1.09005 * 109.46650 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47124 * 299.99430 * 1 2 3 32 32 H 1.08002 * 120.35250 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.51116 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.59162 * 353.37681 * 11 10 8 35 35 H 1.09008 * 109.58517 * 113.79824 * 11 10 8 36 36 H 1.09003 * 109.49599 * 65.32169 * 12 11 10 37 37 H 1.09008 * 109.49476 * 185.38421 * 12 11 10 38 38 H 1.08995 * 109.45911 * 181.38801 * 13 12 11 39 39 H 1.09005 * 109.45876 * 301.34471 * 13 12 11 40 40 H 1.08997 * 109.49434 * 58.58776 * 14 13 12 41 41 H 1.08997 * 109.49270 * 178.68549 * 14 13 12 42 42 H 1.09005 * 109.47447 * 296.17498 * 17 15 10 43 43 H 1.09004 * 109.46650 * 56.16978 * 17 15 10 44 44 H 1.09000 * 109.47355 * 293.74414 * 18 17 15 45 45 H 1.09001 * 109.46866 * 53.74347 * 18 17 15 46 46 H 0.97000 * 119.99991 * 359.97438 * 19 18 17 47 47 H 0.96999 * 120.00067 * 179.97438 * 23 22 20 48 48 H 1.08001 * 120.50655 * 179.70099 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9642 3.6029 0.0011 6 7 3.2790 3.6592 0.0016 7 6 4.0261 2.5612 0.0011 8 6 5.5033 2.6783 0.0011 9 8 6.1910 1.6913 0.1728 10 7 6.0842 3.8786 -0.1948 11 6 5.2750 5.0531 -0.5472 12 6 5.8477 5.6820 -1.8213 13 6 7.3340 5.9820 -1.6138 14 6 8.0858 4.6776 -1.3390 15 6 7.5379 4.0386 -0.0539 16 1 7.7537 4.6826 0.7985 17 6 8.1866 2.6691 0.1572 18 6 9.7075 2.8275 0.2080 19 7 10.3208 1.5440 0.5581 20 6 11.6822 1.4419 0.6638 21 1 12.3039 2.3074 0.4887 22 6 12.2633 0.2258 0.9961 23 7 11.5057 -0.8293 1.2090 24 14 14.1206 0.0863 1.1396 25 1 14.5327 0.3820 2.5353 26 1 14.5428 -1.2913 0.7801 27 1 14.7626 1.0573 0.2177 28 6 3.4345 1.3022 -0.0055 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2242 2.3532 0.0005 33 1 1.3924 4.5192 0.0011 34 1 4.2436 4.7472 -0.7224 35 1 5.3100 5.7783 0.2659 36 1 5.7292 4.9889 -2.6541 37 1 5.3163 6.6082 -2.0404 38 1 7.7382 6.4521 -2.5102 39 1 7.4535 6.6557 -0.7653 40 1 7.9463 3.9939 -2.1763 41 1 9.1478 4.8892 -1.2144 42 1 7.8343 2.2408 1.0956 43 1 7.9174 2.0087 -0.6672 44 1 10.0720 3.1504 -0.7672 45 1 9.9702 3.5726 0.9589 46 1 9.7624 0.7666 0.7158 47 1 11.9118 -1.6791 1.4408 48 1 4.0435 0.4103 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319770859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:14 Heat of formation + Delta-G solvation = 7.403135 kcal Electronic energy + Delta-G solvation = -28958.529376 eV Core-core repulsion = 25015.541239 eV Total energy + Delta-G solvation = -3942.988137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34611 -40.15489 -38.55719 -37.28780 -35.06306 -33.16139 -32.67929 -31.97398 -31.44972 -30.38344 -28.18609 -27.64929 -25.53896 -24.13062 -23.80464 -23.65061 -22.26214 -20.99842 -20.52960 -19.78421 -18.16217 -17.56865 -16.88934 -16.47052 -16.35768 -16.10011 -15.73376 -15.38002 -15.11230 -14.58446 -14.49376 -14.44921 -14.12309 -13.81623 -13.64020 -13.39453 -13.10532 -13.00929 -12.86588 -12.80105 -12.51729 -12.13406 -11.97081 -11.74172 -11.27251 -11.23051 -11.05024 -10.81235 -10.75812 -10.71649 -10.35261 -10.26438 -9.89797 -9.59829 -9.54268 -9.48207 -9.21102 -8.74906 -8.70816 -8.35441 -6.72917 -5.59927 -2.87740 0.35067 0.87991 2.53157 2.66760 3.06868 3.53133 3.57159 3.58594 3.59703 3.85607 4.16872 4.37377 4.58305 4.62998 4.66431 4.72925 4.75641 4.91553 4.93602 4.97304 5.00540 5.18721 5.25208 5.37943 5.40449 5.49456 5.62761 5.64958 5.70973 5.77957 5.86302 5.93009 5.98063 6.06781 6.17082 6.20582 6.35233 6.39256 6.48440 6.52314 6.65702 6.72914 6.84912 7.16900 7.26261 7.36761 7.55827 7.83467 8.26704 8.59238 9.69510 10.32333 10.67282 11.63120 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.002856 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.364852 B = 9802.684414 C =11863.997752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.167 3.833 4 C -0.248 4.248 5 C 0.129 3.871 6 N -0.474 5.474 7 C 0.122 3.878 8 C 0.561 3.439 9 O -0.504 6.504 10 N -0.585 5.585 11 C 0.067 3.933 12 C -0.135 4.135 13 C -0.122 4.122 14 C -0.131 4.131 15 C 0.150 3.850 16 H 0.073 0.927 17 C -0.113 4.113 18 C 0.148 3.852 19 N -0.731 5.731 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.018 4.018 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.142 4.142 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.017 0.983 45 H 0.012 0.988 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.589 12.720 -5.425 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.113 3.887 4 C -0.269 4.269 5 C -0.029 4.029 6 N -0.190 5.190 7 C -0.014 4.014 8 C 0.346 3.654 9 O -0.378 6.378 10 N -0.317 5.317 11 C -0.055 4.055 12 C -0.173 4.173 13 C -0.159 4.159 14 C -0.169 4.169 15 C 0.047 3.953 16 H 0.091 0.909 17 C -0.151 4.151 18 C 0.020 3.980 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.087 0.913 22 C -0.213 4.213 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.209 1.209 28 C -0.164 4.164 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.219 0.781 47 H 0.063 0.937 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -27.527 12.770 -5.333 30.810 hybrid contribution 0.119 -0.889 0.165 0.912 sum -27.408 11.882 -5.168 30.316 Atomic orbital electron populations 1.23186 0.77499 1.04711 1.01659 1.86136 1.22059 1.25908 1.87526 1.19246 0.92143 0.84898 0.92418 1.22356 1.01744 0.93154 1.09601 1.22747 0.90161 0.97295 0.92734 1.67594 1.06611 1.29717 1.15064 1.21284 0.94836 0.88529 0.96762 1.17886 0.85338 0.83759 0.78378 1.90993 1.61390 1.37014 1.48429 1.47963 1.07872 1.08540 1.67364 1.23090 0.99579 0.86971 0.95852 1.21961 0.96339 1.00582 0.98461 1.21566 0.95246 0.97595 1.01525 1.22108 1.00401 0.96586 0.97831 1.21493 0.77748 0.98751 0.97285 0.90926 1.22212 0.94679 0.93769 1.04441 1.20807 0.90880 0.89757 0.96587 1.42368 1.04275 1.06993 1.83893 1.19251 0.83355 0.94990 1.39029 0.91335 1.24751 0.97632 0.95911 1.03054 1.69690 1.33563 1.00265 1.54662 0.86199 0.85724 0.76730 0.77624 1.21853 1.21856 1.20866 1.21452 0.92026 0.99953 1.02973 0.92207 0.87602 0.92189 0.83953 0.81699 0.83304 0.92103 0.92044 0.91247 0.92064 0.91964 0.91436 0.90054 0.90368 0.90252 0.96563 0.97055 0.78079 0.93659 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.81 10.51 -18.95 -0.20 -3.01 16 3 C 0.17 1.63 6.73 -38.85 -0.26 1.37 16 4 C -0.25 -1.73 9.12 -39.19 -0.36 -2.09 16 5 C 0.13 0.93 11.17 -17.62 -0.20 0.73 16 6 N -0.47 -4.89 6.09 -9.87 -0.06 -4.95 16 7 C 0.12 1.57 6.59 -83.04 -0.55 1.03 16 8 C 0.56 8.87 7.58 -12.17 -0.09 8.77 16 9 O -0.50 -9.78 11.77 5.35 0.06 -9.71 16 10 N -0.59 -8.29 2.97 -165.95 -0.49 -8.79 16 11 C 0.07 0.73 5.92 -3.71 -0.02 0.71 16 12 C -0.14 -1.32 6.08 -26.61 -0.16 -1.48 16 13 C -0.12 -1.29 5.88 -26.69 -0.16 -1.44 16 14 C -0.13 -1.77 4.79 -26.39 -0.13 -1.90 16 15 C 0.15 2.31 3.07 -67.38 -0.21 2.10 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.11 -2.23 3.29 -26.73 -0.09 -2.32 16 18 C 0.15 3.33 5.64 -4.04 -0.02 3.30 16 19 N -0.73 -20.64 5.60 -59.91 -0.34 -20.97 16 20 C -0.23 -7.08 9.99 -15.06 -0.15 -7.23 16 21 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 23 N -0.93 -30.17 13.06 55.49 0.72 -29.44 16 24 Si 0.91 23.61 29.55 -169.99 -5.02 18.59 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 27 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 28 C -0.14 -1.76 9.59 -38.89 -0.37 -2.13 16 29 H 0.06 0.18 7.71 -51.93 -0.40 -0.22 16 30 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 32 H 0.14 0.54 6.45 -52.49 -0.34 0.20 16 33 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.15 1.54 3.92 -88.16 -0.35 1.19 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.12 6.88 -51.93 -0.36 0.77 16 42 H 0.08 1.72 6.79 -51.93 -0.35 1.36 16 43 H 0.08 1.71 6.71 -51.93 -0.35 1.36 16 44 H 0.02 0.36 6.89 -51.93 -0.36 0.01 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.39 11.62 7.67 -40.82 -0.31 11.31 16 47 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 48 H 0.16 2.12 7.67 -52.49 -0.40 1.72 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -36.26 377.52 -8.89 -45.15 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.39 Total: 7.56 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.87 Total: -0.11 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.16 Total: -64.15 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.14 Total: -12.72 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.26 -8.89 -45.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319770859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.554 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds