Wall clock time and date at job start Tue Mar 31 2020 17:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35748 * 116.99587 * 2 1 4 4 C 1.39213 * 120.81686 * 0.02562 * 3 2 1 5 5 C 1.38307 * 119.28681 * 179.97438 * 4 3 2 6 6 N 1.31607 * 120.97600 * 359.97438 * 5 4 3 7 7 C 1.32799 * 121.78054 * 0.02562 * 6 5 4 8 8 C 1.48185 * 119.70031 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00066 * 170.58487 * 8 7 6 10 10 N 1.34777 * 119.99855 * 350.31371 * 8 7 6 11 11 C 1.46921 * 120.62936 * 353.63325 * 10 8 7 12 12 C 1.53192 * 108.77301 * 233.58269 * 11 10 8 13 13 C 1.53038 * 109.31565 * 305.36783 * 12 11 10 14 14 C 1.53040 * 109.53712 * 61.36471 * 13 12 11 15 15 C 1.46925 * 120.62964 * 173.35305 * 10 8 7 16 16 H 1.08994 * 109.58656 * 246.20606 * 15 10 8 17 17 C 1.53004 * 109.58746 * 6.62484 * 15 10 8 18 18 C 1.52998 * 109.47225 * 176.16757 * 17 15 10 19 19 N 1.46501 * 109.47082 * 173.74205 * 18 17 15 20 20 C 1.36929 * 119.99861 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00573 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00348 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99587 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00489 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46624 * 90.00412 * 24 22 20 26 26 H 1.48503 * 109.47187 * 210.00261 * 24 22 20 27 27 H 1.48492 * 109.47266 * 330.00761 * 24 22 20 28 28 C 1.39109 * 120.60236 * 0.26535 * 7 6 5 29 29 H 1.08992 * 109.47699 * 60.00047 * 1 2 3 30 30 H 1.09005 * 109.46650 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47124 * 299.99430 * 1 2 3 32 32 H 1.08002 * 120.35250 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.51116 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.59162 * 353.37681 * 11 10 8 35 35 H 1.09008 * 109.58517 * 113.79824 * 11 10 8 36 36 H 1.09003 * 109.49599 * 65.32169 * 12 11 10 37 37 H 1.09008 * 109.49476 * 185.38421 * 12 11 10 38 38 H 1.08995 * 109.45911 * 181.38801 * 13 12 11 39 39 H 1.09005 * 109.45876 * 301.34471 * 13 12 11 40 40 H 1.08997 * 109.49434 * 58.58776 * 14 13 12 41 41 H 1.08997 * 109.49270 * 178.68549 * 14 13 12 42 42 H 1.09005 * 109.47447 * 296.17498 * 17 15 10 43 43 H 1.09004 * 109.46650 * 56.16978 * 17 15 10 44 44 H 1.09000 * 109.47355 * 293.74414 * 18 17 15 45 45 H 1.09001 * 109.46866 * 53.74347 * 18 17 15 46 46 H 0.97000 * 119.99991 * 359.97438 * 19 18 17 47 47 H 0.96999 * 120.00067 * 179.97438 * 23 22 20 48 48 H 1.08001 * 120.50655 * 179.70099 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9642 3.6029 0.0011 6 7 3.2790 3.6592 0.0016 7 6 4.0261 2.5612 0.0011 8 6 5.5033 2.6783 0.0011 9 8 6.1910 1.6913 0.1728 10 7 6.0842 3.8786 -0.1948 11 6 5.2750 5.0531 -0.5472 12 6 5.8477 5.6820 -1.8213 13 6 7.3340 5.9820 -1.6138 14 6 8.0858 4.6776 -1.3390 15 6 7.5379 4.0386 -0.0539 16 1 7.7537 4.6826 0.7985 17 6 8.1866 2.6691 0.1572 18 6 9.7075 2.8275 0.2080 19 7 10.3208 1.5440 0.5581 20 6 11.6822 1.4419 0.6638 21 1 12.3039 2.3074 0.4887 22 6 12.2633 0.2258 0.9961 23 7 11.5057 -0.8293 1.2090 24 14 14.1206 0.0863 1.1396 25 1 14.5327 0.3820 2.5353 26 1 14.5428 -1.2913 0.7801 27 1 14.7626 1.0573 0.2177 28 6 3.4345 1.3022 -0.0055 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2242 2.3532 0.0005 33 1 1.3924 4.5192 0.0011 34 1 4.2436 4.7472 -0.7224 35 1 5.3100 5.7783 0.2659 36 1 5.7292 4.9889 -2.6541 37 1 5.3163 6.6082 -2.0404 38 1 7.7382 6.4521 -2.5102 39 1 7.4535 6.6557 -0.7653 40 1 7.9463 3.9939 -2.1763 41 1 9.1478 4.8892 -1.2144 42 1 7.8343 2.2408 1.0956 43 1 7.9174 2.0087 -0.6672 44 1 10.0720 3.1504 -0.7672 45 1 9.9702 3.5726 0.9589 46 1 9.7624 0.7666 0.7158 47 1 11.9118 -1.6791 1.4408 48 1 4.0435 0.4103 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319770859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:14 Heat of formation + Delta-G solvation = -17.715847 kcal Electronic energy + Delta-G solvation = -28959.618616 eV Core-core repulsion = 25015.541239 eV Total energy + Delta-G solvation = -3944.077378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23758 -41.11127 -39.29590 -38.44478 -36.94868 -34.63941 -33.94093 -32.75159 -32.66083 -31.90450 -29.28168 -28.56595 -26.83335 -25.50699 -25.03419 -24.41642 -23.77065 -22.14770 -21.91803 -20.73947 -19.27305 -18.91227 -18.29072 -17.29134 -17.18052 -16.99612 -16.71107 -16.67412 -16.40247 -15.87279 -15.71385 -15.43341 -15.29524 -15.16013 -14.77874 -14.70027 -14.43067 -14.30432 -14.19146 -13.87118 -13.39149 -13.31606 -12.98024 -12.81462 -12.73453 -12.59949 -12.37253 -12.23758 -12.14899 -11.97164 -11.88041 -11.76454 -11.64008 -11.40273 -10.94006 -10.54998 -10.36435 -10.07311 -9.77429 -9.51481 -9.02375 -7.95070 -5.26255 -0.47733 0.16532 1.44048 1.48561 1.57027 1.66213 1.73721 2.21769 2.55172 2.72260 3.01077 3.36901 3.55658 3.60824 3.77564 3.85320 3.95068 4.00149 4.09283 4.15671 4.20500 4.30853 4.32489 4.38368 4.45979 4.47735 4.53035 4.62889 4.68750 4.75105 4.75850 4.79023 4.91720 4.93869 5.01588 5.09639 5.12952 5.18707 5.23652 5.37758 5.39075 5.47131 5.52111 5.56270 5.85924 6.15154 6.25673 6.37475 6.66435 7.10784 7.29991 8.06781 8.31686 9.29303 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.002856 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.364852 B = 9802.684414 C =11863.997752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.332 6.332 3 C 0.161 3.839 4 C -0.225 4.225 5 C 0.135 3.865 6 N -0.478 5.478 7 C 0.106 3.894 8 C 0.550 3.450 9 O -0.560 6.560 10 N -0.583 5.583 11 C 0.063 3.937 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.153 3.847 16 H 0.083 0.917 17 C -0.090 4.090 18 C 0.149 3.851 19 N -0.750 5.750 20 C -0.248 4.248 21 H 0.080 0.920 22 C -0.084 4.084 23 N -0.975 5.975 24 Si 0.984 3.016 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.265 1.265 28 C -0.169 4.169 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.185 0.815 33 H 0.215 0.785 34 H 0.161 0.839 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.026 0.974 45 H 0.021 0.979 46 H 0.369 0.631 47 H 0.251 0.749 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.942 16.158 -6.004 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.243 6.243 3 C 0.107 3.893 4 C -0.245 4.245 5 C -0.022 4.022 6 N -0.194 5.194 7 C -0.029 4.029 8 C 0.337 3.663 9 O -0.438 6.438 10 N -0.314 5.314 11 C -0.057 4.057 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.050 3.950 16 H 0.101 0.899 17 C -0.128 4.128 18 C 0.022 3.978 19 N -0.392 5.392 20 C -0.380 4.380 21 H 0.098 0.902 22 C -0.275 4.275 23 N -0.625 5.625 24 Si 0.811 3.189 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.190 1.190 28 C -0.192 4.192 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.231 0.769 34 H 0.177 0.823 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.039 0.961 46 H 0.200 0.800 47 H 0.060 0.940 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -29.910 16.292 -5.934 34.572 hybrid contribution 0.640 -1.953 0.342 2.083 sum -29.270 14.339 -5.592 33.070 Atomic orbital electron populations 1.23554 0.74900 1.06266 1.03389 1.86113 1.24785 1.26029 1.87380 1.19296 0.91235 0.86371 0.92375 1.22798 1.03615 0.91577 1.06551 1.23577 0.89021 0.99272 0.90342 1.67502 1.08176 1.28202 1.15496 1.20712 0.93234 0.89545 0.99411 1.18462 0.86903 0.83469 0.77492 1.90957 1.63082 1.38750 1.51058 1.48109 1.07450 1.09271 1.66543 1.23389 0.99681 0.85768 0.96902 1.21959 0.95976 1.01643 0.97238 1.21555 0.95370 0.95665 1.02770 1.22059 1.00652 0.97974 0.95869 1.21365 0.78822 0.95922 0.98941 0.89898 1.21878 0.93027 0.96085 1.01844 1.20972 0.92399 0.87570 0.96830 1.42659 1.04005 1.08322 1.84181 1.19726 0.84364 0.95507 1.38371 0.90222 1.25758 1.03103 0.95496 1.03171 1.69892 1.35850 1.00766 1.56032 0.84996 0.79184 0.76735 0.77961 1.21079 1.22026 1.18999 1.21327 0.93682 0.98924 1.05226 0.90255 0.86446 0.90444 0.79741 0.76860 0.82333 0.90797 0.93142 0.87950 0.90499 0.90678 0.93114 0.90429 0.93380 0.92886 0.95594 0.96138 0.79983 0.93998 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.20 16 2 O -0.33 -5.99 10.51 -90.73 -0.95 -6.95 16 3 C 0.16 3.08 6.73 22.74 0.15 3.24 16 4 C -0.23 -2.36 9.12 22.52 0.21 -2.15 16 5 C 0.14 1.43 11.17 84.74 0.95 2.38 16 6 N -0.48 -9.04 6.09 -185.13 -1.13 -10.16 16 7 C 0.11 2.86 6.59 41.85 0.28 3.14 16 8 C 0.55 18.84 7.58 86.89 0.66 19.50 16 9 O -0.56 -24.51 11.77 -3.76 -0.04 -24.55 16 10 N -0.58 -16.97 2.97 -797.23 -2.36 -19.34 16 11 C 0.06 1.26 5.92 86.36 0.51 1.77 16 12 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 13 C -0.12 -2.17 5.88 30.62 0.18 -1.99 16 14 C -0.13 -3.42 4.79 30.82 0.15 -3.27 16 15 C 0.15 4.85 3.07 45.12 0.14 4.99 16 16 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 17 C -0.09 -3.85 3.29 30.59 0.10 -3.75 16 18 C 0.15 7.00 5.64 86.38 0.49 7.49 16 19 N -0.75 -44.39 5.60 -343.45 -1.92 -46.31 16 20 C -0.25 -15.31 9.99 84.04 0.84 -14.47 16 21 H 0.08 4.63 7.83 -2.91 -0.02 4.60 16 22 C -0.08 -5.24 5.50 84.86 0.47 -4.77 16 23 N -0.97 -65.40 13.06 21.65 0.28 -65.12 16 24 Si 0.98 49.32 29.55 68.60 2.03 51.35 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 C -0.17 -4.56 9.59 22.72 0.22 -4.34 16 29 H 0.08 0.21 7.71 -2.39 -0.02 0.19 16 30 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.08 0.24 7.71 -2.39 -0.02 0.22 16 32 H 0.19 0.35 6.45 -2.91 -0.02 0.33 16 33 H 0.21 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.16 2.92 3.92 -73.93 -0.29 2.63 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 2.12 6.88 -2.39 -0.02 2.10 16 42 H 0.05 2.32 6.79 -2.38 -0.02 2.31 16 43 H 0.05 2.52 6.71 -2.38 -0.02 2.51 16 44 H 0.03 1.18 6.89 -2.39 -0.02 1.17 16 45 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.37 23.84 7.67 -92.71 -0.71 23.13 16 47 H 0.25 16.15 8.31 -92.71 -0.77 15.38 16 48 H 0.13 4.07 7.67 -2.91 -0.02 4.05 16 Total: -1.00 -85.59 377.52 2.51 -83.08 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.01 Total: 31.05 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.63 Total: 6.95 kcal Atomic # 7 Polarization: -135.79 SS G_CDS: -5.13 Total: -140.93 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.00 Total: -31.50 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Total: -85.59 2.51 -83.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319770859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.364 kcal (2) G-P(sol) polarization free energy of solvation -85.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds