Wall clock time and date at job start Tue Mar 31 2020 17:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35750 * 117.00062 * 2 1 4 4 C 1.39212 * 120.81469 * 0.02562 * 3 2 1 5 5 C 1.38314 * 119.28556 * 179.97438 * 4 3 2 6 6 N 1.31611 * 120.97119 * 359.72069 * 5 4 3 7 7 C 1.32801 * 121.78273 * 0.57021 * 6 5 4 8 8 C 1.48182 * 119.70152 * 179.70643 * 7 6 5 9 9 O 1.21514 * 120.00217 * 187.57529 * 8 7 6 10 10 N 1.34776 * 119.99629 * 7.57562 * 8 7 6 11 11 C 1.46960 * 120.65776 * 11.13219 * 10 8 7 12 12 C 1.53188 * 108.89129 * 126.46118 * 11 10 8 13 13 C 1.53040 * 109.31321 * 54.55847 * 12 11 10 14 14 C 1.53045 * 109.53635 * 298.63424 * 13 12 11 15 15 C 1.46926 * 120.62721 * 190.94284 * 10 8 7 16 16 H 1.09008 * 109.58533 * 113.68427 * 15 10 8 17 17 C 1.52996 * 109.59021 * 353.40026 * 15 10 8 18 18 C 1.52999 * 109.47604 * 179.47208 * 17 15 10 19 19 N 1.46491 * 109.47307 * 175.69277 * 18 17 15 20 20 C 1.36936 * 120.00027 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00175 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00542 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99647 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00607 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46844 * 270.00195 * 24 22 20 26 26 H 1.48499 * 109.46955 * 29.99597 * 24 22 20 27 27 H 1.48499 * 109.47268 * 150.00349 * 24 22 20 28 28 C 1.39107 * 120.59814 * 359.43477 * 7 6 5 29 29 H 1.08998 * 109.46982 * 300.00407 * 1 2 3 30 30 H 1.09004 * 109.46841 * 59.99579 * 1 2 3 31 31 H 1.08989 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.35766 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.51069 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.59297 * 6.60109 * 11 10 8 35 35 H 1.09004 * 109.58160 * 246.31667 * 11 10 8 36 36 H 1.08998 * 109.49608 * 294.60532 * 12 11 10 37 37 H 1.09005 * 109.52357 * 174.52447 * 12 11 10 38 38 H 1.08998 * 109.45928 * 178.61602 * 13 12 11 39 39 H 1.08999 * 109.46076 * 58.65363 * 13 12 11 40 40 H 1.08997 * 109.49534 * 301.41137 * 14 13 12 41 41 H 1.08998 * 109.49402 * 181.31660 * 14 13 12 42 42 H 1.09003 * 109.47309 * 59.47245 * 17 15 10 43 43 H 1.09007 * 109.46835 * 299.47409 * 17 15 10 44 44 H 1.09007 * 109.46529 * 55.69349 * 18 17 15 45 45 H 1.08999 * 109.47078 * 295.69978 * 18 17 15 46 46 H 0.97000 * 120.00359 * 359.97438 * 19 18 17 47 47 H 0.96999 * 119.99953 * 180.02562 * 23 22 20 48 48 H 1.08005 * 120.50152 * 180.30146 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3039 2.3877 0.0005 5 6 1.9645 3.6029 0.0011 6 7 3.2794 3.6590 0.0066 7 6 4.0263 2.5610 0.0006 8 6 5.5035 2.6779 0.0006 9 8 6.1915 1.6866 -0.1435 10 7 6.0840 3.8837 0.1605 11 6 5.2900 5.0484 0.5761 12 6 5.9446 5.6807 1.8083 13 6 7.4092 5.9972 1.4971 14 6 8.1536 4.7015 1.1661 15 6 7.5240 4.0581 -0.0734 16 1 7.6782 4.7034 -0.9383 17 6 8.1710 2.6953 -0.3285 18 6 9.6679 2.8813 -0.5848 19 7 10.3056 1.5702 -0.7270 20 6 11.6516 1.4856 -0.9640 21 1 12.2432 2.3855 -1.0456 22 6 12.2561 0.2432 -1.0983 23 7 11.5353 -0.8536 -0.9983 24 14 14.0924 0.1278 -1.4208 25 1 14.3388 0.1294 -2.8853 26 1 14.7777 1.2910 -0.8023 27 1 14.6205 -1.1288 -0.8314 28 6 3.4346 1.3020 0.0000 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2244 2.3533 0.0005 33 1 1.3928 4.5192 0.0019 34 1 4.2769 4.7309 0.8230 35 1 5.2575 5.7764 -0.2345 36 1 5.8927 4.9845 2.6454 37 1 5.4207 6.6008 2.0673 38 1 7.8708 6.4697 2.3641 39 1 7.4613 6.6739 0.6443 40 1 8.0809 4.0147 2.0092 41 1 9.2018 4.9249 0.9674 42 1 7.7084 2.2307 -1.1993 43 1 8.0282 2.0565 0.5431 44 1 10.1165 3.4145 0.2535 45 1 9.8112 3.4563 -1.4996 46 1 9.7744 0.7619 -0.6534 47 1 11.9577 -1.7218 -1.0917 48 1 4.0436 0.4101 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319770860.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:17 Heat of formation + Delta-G solvation = 5.612546 kcal Electronic energy + Delta-G solvation = -28951.181138 eV Core-core repulsion = 25008.115355 eV Total energy + Delta-G solvation = -3943.065783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32580 -40.15649 -38.54667 -37.29427 -35.06682 -33.15551 -32.68952 -31.95694 -31.44082 -30.40008 -28.17541 -27.66301 -25.53647 -24.12209 -23.80319 -23.64897 -22.24196 -21.01001 -20.54148 -19.77665 -18.15233 -17.56007 -16.87644 -16.43649 -16.35237 -16.08106 -15.72467 -15.39977 -15.10864 -14.58303 -14.49371 -14.44290 -14.13311 -13.86931 -13.64348 -13.38055 -13.10967 -13.03037 -12.84536 -12.78591 -12.49507 -12.12715 -11.97548 -11.74423 -11.24477 -11.19837 -11.04848 -10.82482 -10.75617 -10.69508 -10.36701 -10.24245 -9.90109 -9.61856 -9.54553 -9.49859 -9.23119 -8.81491 -8.70710 -8.34127 -6.72934 -5.60144 -2.87972 0.35582 0.89544 2.53865 2.66210 3.06769 3.52997 3.57036 3.59168 3.59560 3.86853 4.17785 4.38439 4.58841 4.63353 4.67047 4.73520 4.76200 4.91017 4.93573 4.97733 5.00042 5.18796 5.26174 5.38803 5.40642 5.49067 5.62290 5.65723 5.70594 5.77847 5.86804 5.93131 5.97672 6.06971 6.16659 6.19055 6.34862 6.36659 6.49328 6.50108 6.66686 6.73503 6.82825 7.16670 7.26017 7.38252 7.55653 7.83288 8.25729 8.59019 9.69300 10.32051 10.66971 11.62892 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.002855 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.957815 B = 9803.430212 C =11852.286033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.166 3.834 4 C -0.247 4.247 5 C 0.129 3.871 6 N -0.475 5.475 7 C 0.121 3.879 8 C 0.562 3.438 9 O -0.502 6.502 10 N -0.587 5.587 11 C 0.081 3.919 12 C -0.136 4.136 13 C -0.121 4.121 14 C -0.132 4.132 15 C 0.150 3.850 16 H 0.073 0.927 17 C -0.114 4.114 18 C 0.147 3.853 19 N -0.731 5.731 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.018 4.018 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.283 1.283 27 H -0.292 1.292 28 C -0.143 4.143 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.018 0.982 45 H 0.012 0.988 46 H 0.386 0.614 47 H 0.254 0.746 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.414 12.823 5.126 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.112 3.888 4 C -0.268 4.268 5 C -0.030 4.030 6 N -0.191 5.191 7 C -0.016 4.016 8 C 0.347 3.653 9 O -0.377 6.377 10 N -0.320 5.320 11 C -0.042 4.042 12 C -0.175 4.175 13 C -0.159 4.159 14 C -0.170 4.170 15 C 0.048 3.952 16 H 0.091 0.909 17 C -0.152 4.152 18 C 0.019 3.981 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.087 0.913 22 C -0.213 4.213 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.219 1.219 26 H -0.209 1.209 27 H -0.219 1.219 28 C -0.164 4.164 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.030 0.970 46 H 0.219 0.781 47 H 0.063 0.937 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -27.352 12.880 5.024 30.648 hybrid contribution 0.080 -0.919 -0.190 0.942 sum -27.272 11.962 4.834 30.170 Atomic orbital electron populations 1.23183 0.77517 1.04694 1.01649 1.86134 1.22043 1.25923 1.87558 1.19239 0.92143 0.84889 0.92529 1.22365 1.01733 0.93185 1.09561 1.22726 0.90142 0.97242 0.92841 1.67739 1.06663 1.30007 1.14665 1.21274 0.94851 0.88520 0.96907 1.17877 0.85349 0.83756 0.78278 1.90984 1.61516 1.36824 1.48328 1.47933 1.09122 1.08588 1.66326 1.22794 0.98271 0.87250 0.95874 1.21976 0.96387 1.00601 0.98504 1.21559 0.95337 0.97625 1.01356 1.22053 1.00141 0.96654 0.98178 1.21363 0.78030 0.98703 0.97119 0.90939 1.22224 0.94982 0.93851 1.04141 1.20819 0.90809 0.89533 0.96954 1.42358 1.06326 1.02223 1.86598 1.19250 0.84795 0.92256 1.40327 0.91334 1.24750 0.97825 0.95449 1.03318 1.69689 1.34403 0.96753 1.57326 0.86199 0.85529 0.76808 0.77740 1.21851 1.20863 1.21858 1.21459 0.92027 0.99987 1.02943 0.92221 0.92202 0.87612 0.83983 0.81745 0.84376 0.91995 0.91988 0.91186 0.92030 0.91952 0.91405 0.89951 0.90393 0.90261 0.96475 0.97041 0.78077 0.93657 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.84 10.51 -18.96 -0.20 -3.04 16 3 C 0.17 1.64 6.73 -38.85 -0.26 1.38 16 4 C -0.25 -1.76 9.12 -39.19 -0.36 -2.11 16 5 C 0.13 0.95 11.17 -17.62 -0.20 0.75 16 6 N -0.47 -4.94 6.18 -9.87 -0.06 -5.00 16 7 C 0.12 1.56 6.57 -83.04 -0.55 1.02 16 8 C 0.56 8.88 7.53 -12.18 -0.09 8.78 16 9 O -0.50 -9.74 11.82 5.35 0.06 -9.67 16 10 N -0.59 -8.30 2.98 -166.17 -0.50 -8.79 16 11 C 0.08 0.87 5.80 -3.69 -0.02 0.85 16 12 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16 13 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16 14 C -0.13 -1.80 4.88 -26.61 -0.13 -1.93 16 15 C 0.15 2.30 3.00 -67.60 -0.20 2.10 16 16 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 17 C -0.11 -2.24 3.25 -26.73 -0.09 -2.33 16 18 C 0.15 3.30 6.05 -4.05 -0.02 3.28 16 19 N -0.73 -20.59 5.60 -59.91 -0.34 -20.92 16 20 C -0.23 -7.07 9.99 -15.06 -0.15 -7.22 16 21 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 23 N -0.93 -30.14 13.06 55.49 0.72 -29.41 16 24 Si 0.91 23.59 29.55 -169.99 -5.02 18.57 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 C -0.14 -1.77 9.59 -38.89 -0.37 -2.14 16 29 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 30 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 31 H 0.11 0.32 8.14 -51.94 -0.42 -0.11 16 32 H 0.14 0.56 6.45 -52.49 -0.34 0.22 16 33 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.14 1.43 4.21 -76.22 -0.32 1.11 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.15 6.68 -51.93 -0.35 0.80 16 42 H 0.08 1.69 6.59 -51.93 -0.34 1.35 16 43 H 0.08 1.72 6.91 -51.92 -0.36 1.36 16 44 H 0.02 0.38 6.38 -51.93 -0.33 0.05 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.39 11.60 7.67 -40.82 -0.31 11.29 16 47 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 48 H 0.16 2.13 7.66 -52.48 -0.40 1.73 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -36.18 377.44 -8.83 -45.01 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.33 Total: 7.61 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.86 Total: -0.05 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.17 Total: -64.12 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.14 Total: -12.71 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.57 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.18 -8.83 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319770860.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.624 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds