Wall clock time and date at job start Tue Mar 31 2020 17:43:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35750 * 117.00062 * 2 1
4 4 C 1.39212 * 120.81469 * 0.02562 * 3 2 1
5 5 C 1.38314 * 119.28556 * 179.97438 * 4 3 2
6 6 N 1.31611 * 120.97119 * 359.72069 * 5 4 3
7 7 C 1.32801 * 121.78273 * 0.57021 * 6 5 4
8 8 C 1.48182 * 119.70152 * 179.70643 * 7 6 5
9 9 O 1.21514 * 120.00217 * 187.57529 * 8 7 6
10 10 N 1.34776 * 119.99629 * 7.57562 * 8 7 6
11 11 C 1.46960 * 120.65776 * 11.13219 * 10 8 7
12 12 C 1.53188 * 108.89129 * 126.46118 * 11 10 8
13 13 C 1.53040 * 109.31321 * 54.55847 * 12 11 10
14 14 C 1.53045 * 109.53635 * 298.63424 * 13 12 11
15 15 C 1.46926 * 120.62721 * 190.94284 * 10 8 7
16 16 H 1.09008 * 109.58533 * 113.68427 * 15 10 8
17 17 C 1.52996 * 109.59021 * 353.40026 * 15 10 8
18 18 C 1.52999 * 109.47604 * 179.47208 * 17 15 10
19 19 N 1.46491 * 109.47307 * 175.69277 * 18 17 15
20 20 C 1.36936 * 120.00027 * 179.97438 * 19 18 17
21 21 H 1.08001 * 120.00175 * 0.02562 * 20 19 18
22 22 C 1.38813 * 120.00542 * 179.97438 * 20 19 18
23 23 N 1.31626 * 119.99647 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00607 * 180.02562 * 22 20 19
25 25 H 1.48508 * 109.46844 * 270.00195 * 24 22 20
26 26 H 1.48499 * 109.46955 * 29.99597 * 24 22 20
27 27 H 1.48499 * 109.47268 * 150.00349 * 24 22 20
28 28 C 1.39107 * 120.59814 * 359.43477 * 7 6 5
29 29 H 1.08998 * 109.46982 * 300.00407 * 1 2 3
30 30 H 1.09004 * 109.46841 * 59.99579 * 1 2 3
31 31 H 1.08989 * 109.47238 * 179.97438 * 1 2 3
32 32 H 1.07998 * 120.35766 * 359.97438 * 4 3 2
33 33 H 1.08001 * 119.51069 * 180.02562 * 5 4 3
34 34 H 1.09004 * 109.59297 * 6.60109 * 11 10 8
35 35 H 1.09004 * 109.58160 * 246.31667 * 11 10 8
36 36 H 1.08998 * 109.49608 * 294.60532 * 12 11 10
37 37 H 1.09005 * 109.52357 * 174.52447 * 12 11 10
38 38 H 1.08998 * 109.45928 * 178.61602 * 13 12 11
39 39 H 1.08999 * 109.46076 * 58.65363 * 13 12 11
40 40 H 1.08997 * 109.49534 * 301.41137 * 14 13 12
41 41 H 1.08998 * 109.49402 * 181.31660 * 14 13 12
42 42 H 1.09003 * 109.47309 * 59.47245 * 17 15 10
43 43 H 1.09007 * 109.46835 * 299.47409 * 17 15 10
44 44 H 1.09007 * 109.46529 * 55.69349 * 18 17 15
45 45 H 1.08999 * 109.47078 * 295.69978 * 18 17 15
46 46 H 0.97000 * 120.00359 * 359.97438 * 19 18 17
47 47 H 0.96999 * 119.99953 * 180.02562 * 23 22 20
48 48 H 1.08005 * 120.50152 * 180.30146 * 28 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0454 1.2095 0.0000
4 6 1.3039 2.3877 0.0005
5 6 1.9645 3.6029 0.0011
6 7 3.2794 3.6590 0.0066
7 6 4.0263 2.5610 0.0006
8 6 5.5035 2.6779 0.0006
9 8 6.1915 1.6866 -0.1435
10 7 6.0840 3.8837 0.1605
11 6 5.2900 5.0484 0.5761
12 6 5.9446 5.6807 1.8083
13 6 7.4092 5.9972 1.4971
14 6 8.1536 4.7015 1.1661
15 6 7.5240 4.0581 -0.0734
16 1 7.6782 4.7034 -0.9383
17 6 8.1710 2.6953 -0.3285
18 6 9.6679 2.8813 -0.5848
19 7 10.3056 1.5702 -0.7270
20 6 11.6516 1.4856 -0.9640
21 1 12.2432 2.3855 -1.0456
22 6 12.2561 0.2432 -1.0983
23 7 11.5353 -0.8536 -0.9983
24 14 14.0924 0.1278 -1.4208
25 1 14.3388 0.1294 -2.8853
26 1 14.7777 1.2910 -0.8023
27 1 14.6205 -1.1288 -0.8314
28 6 3.4346 1.3020 0.0000
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 0.2244 2.3533 0.0005
33 1 1.3928 4.5192 0.0019
34 1 4.2769 4.7309 0.8230
35 1 5.2575 5.7764 -0.2345
36 1 5.8927 4.9845 2.6454
37 1 5.4207 6.6008 2.0673
38 1 7.8708 6.4697 2.3641
39 1 7.4613 6.6739 0.6443
40 1 8.0809 4.0147 2.0092
41 1 9.2018 4.9249 0.9674
42 1 7.7084 2.2307 -1.1993
43 1 8.0282 2.0565 0.5431
44 1 10.1165 3.4145 0.2535
45 1 9.8112 3.4563 -1.4996
46 1 9.7744 0.7619 -0.6534
47 1 11.9577 -1.7218 -1.0917
48 1 4.0436 0.4101 0.0000
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001319770860.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:43:17
Heat of formation + Delta-G solvation = 5.612546 kcal
Electronic energy + Delta-G solvation = -28951.181138 eV
Core-core repulsion = 25008.115355 eV
Total energy + Delta-G solvation = -3943.065783 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.32580 -40.15649 -38.54667 -37.29427 -35.06682 -33.15551 -32.68952 -31.95694
-31.44082 -30.40008 -28.17541 -27.66301 -25.53647 -24.12209 -23.80319 -23.64897
-22.24196 -21.01001 -20.54148 -19.77665 -18.15233 -17.56007 -16.87644 -16.43649
-16.35237 -16.08106 -15.72467 -15.39977 -15.10864 -14.58303 -14.49371 -14.44290
-14.13311 -13.86931 -13.64348 -13.38055 -13.10967 -13.03037 -12.84536 -12.78591
-12.49507 -12.12715 -11.97548 -11.74423 -11.24477 -11.19837 -11.04848 -10.82482
-10.75617 -10.69508 -10.36701 -10.24245 -9.90109 -9.61856 -9.54553 -9.49859
-9.23119 -8.81491 -8.70710 -8.34127 -6.72934 -5.60144 -2.87972 0.35582
0.89544 2.53865 2.66210 3.06769 3.52997 3.57036 3.59168 3.59560
3.86853 4.17785 4.38439 4.58841 4.63353 4.67047 4.73520 4.76200
4.91017 4.93573 4.97733 5.00042 5.18796 5.26174 5.38803 5.40642
5.49067 5.62290 5.65723 5.70594 5.77847 5.86804 5.93131 5.97672
6.06971 6.16659 6.19055 6.34862 6.36659 6.49328 6.50108 6.66686
6.73503 6.82825 7.16670 7.26017 7.38252 7.55653 7.83288 8.25729
8.59019 9.69300 10.32051 10.66971 11.62892
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.012425 B = 0.002855 C = 0.002362
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2252.957815 B = 9803.430212 C =11852.286033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.306 6.306
3 C 0.166 3.834
4 C -0.247 4.247
5 C 0.129 3.871
6 N -0.475 5.475
7 C 0.121 3.879
8 C 0.562 3.438
9 O -0.502 6.502
10 N -0.587 5.587
11 C 0.081 3.919
12 C -0.136 4.136
13 C -0.121 4.121
14 C -0.132 4.132
15 C 0.150 3.850
16 H 0.073 0.927
17 C -0.114 4.114
18 C 0.147 3.853
19 N -0.731 5.731
20 C -0.235 4.235
21 H 0.069 0.931
22 C -0.018 4.018
23 N -0.933 5.933
24 Si 0.906 3.094
25 H -0.291 1.291
26 H -0.283 1.283
27 H -0.292 1.292
28 C -0.143 4.143
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.106 0.894
32 H 0.142 0.858
33 H 0.165 0.835
34 H 0.140 0.860
35 H 0.062 0.938
36 H 0.061 0.939
37 H 0.070 0.930
38 H 0.061 0.939
39 H 0.062 0.938
40 H 0.067 0.933
41 H 0.082 0.918
42 H 0.078 0.922
43 H 0.079 0.921
44 H 0.018 0.982
45 H 0.012 0.988
46 H 0.386 0.614
47 H 0.254 0.746
48 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.414 12.823 5.126 31.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.217 6.217
3 C 0.112 3.888
4 C -0.268 4.268
5 C -0.030 4.030
6 N -0.191 5.191
7 C -0.016 4.016
8 C 0.347 3.653
9 O -0.377 6.377
10 N -0.320 5.320
11 C -0.042 4.042
12 C -0.175 4.175
13 C -0.159 4.159
14 C -0.170 4.170
15 C 0.048 3.952
16 H 0.091 0.909
17 C -0.152 4.152
18 C 0.019 3.981
19 N -0.375 5.375
20 C -0.366 4.366
21 H 0.087 0.913
22 C -0.213 4.213
23 N -0.582 5.582
24 Si 0.737 3.263
25 H -0.219 1.219
26 H -0.209 1.209
27 H -0.219 1.219
28 C -0.164 4.164
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.124 0.876
32 H 0.160 0.840
33 H 0.183 0.817
34 H 0.156 0.844
35 H 0.080 0.920
36 H 0.080 0.920
37 H 0.088 0.912
38 H 0.080 0.920
39 H 0.080 0.920
40 H 0.086 0.914
41 H 0.100 0.900
42 H 0.096 0.904
43 H 0.097 0.903
44 H 0.035 0.965
45 H 0.030 0.970
46 H 0.219 0.781
47 H 0.063 0.937
48 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -27.352 12.880 5.024 30.648
hybrid contribution 0.080 -0.919 -0.190 0.942
sum -27.272 11.962 4.834 30.170
Atomic orbital electron populations
1.23183 0.77517 1.04694 1.01649 1.86134 1.22043 1.25923 1.87558
1.19239 0.92143 0.84889 0.92529 1.22365 1.01733 0.93185 1.09561
1.22726 0.90142 0.97242 0.92841 1.67739 1.06663 1.30007 1.14665
1.21274 0.94851 0.88520 0.96907 1.17877 0.85349 0.83756 0.78278
1.90984 1.61516 1.36824 1.48328 1.47933 1.09122 1.08588 1.66326
1.22794 0.98271 0.87250 0.95874 1.21976 0.96387 1.00601 0.98504
1.21559 0.95337 0.97625 1.01356 1.22053 1.00141 0.96654 0.98178
1.21363 0.78030 0.98703 0.97119 0.90939 1.22224 0.94982 0.93851
1.04141 1.20819 0.90809 0.89533 0.96954 1.42358 1.06326 1.02223
1.86598 1.19250 0.84795 0.92256 1.40327 0.91334 1.24750 0.97825
0.95449 1.03318 1.69689 1.34403 0.96753 1.57326 0.86199 0.85529
0.76808 0.77740 1.21851 1.20863 1.21858 1.21459 0.92027 0.99987
1.02943 0.92221 0.92202 0.87612 0.83983 0.81745 0.84376 0.91995
0.91988 0.91186 0.92030 0.91952 0.91405 0.89951 0.90393 0.90261
0.96475 0.97041 0.78077 0.93657 0.82379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 9.84 101.05 0.99 1.10 16
2 O -0.31 -2.84 10.51 -18.96 -0.20 -3.04 16
3 C 0.17 1.64 6.73 -38.85 -0.26 1.38 16
4 C -0.25 -1.76 9.12 -39.19 -0.36 -2.11 16
5 C 0.13 0.95 11.17 -17.62 -0.20 0.75 16
6 N -0.47 -4.94 6.18 -9.87 -0.06 -5.00 16
7 C 0.12 1.56 6.57 -83.04 -0.55 1.02 16
8 C 0.56 8.88 7.53 -12.18 -0.09 8.78 16
9 O -0.50 -9.74 11.82 5.35 0.06 -9.67 16
10 N -0.59 -8.30 2.98 -166.17 -0.50 -8.79 16
11 C 0.08 0.87 5.80 -3.69 -0.02 0.85 16
12 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16
13 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16
14 C -0.13 -1.80 4.88 -26.61 -0.13 -1.93 16
15 C 0.15 2.30 3.00 -67.60 -0.20 2.10 16
16 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16
17 C -0.11 -2.24 3.25 -26.73 -0.09 -2.33 16
18 C 0.15 3.30 6.05 -4.05 -0.02 3.28 16
19 N -0.73 -20.59 5.60 -59.91 -0.34 -20.92 16
20 C -0.23 -7.07 9.99 -15.06 -0.15 -7.22 16
21 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16
22 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16
23 N -0.93 -30.14 13.06 55.49 0.72 -29.41 16
24 Si 0.91 23.59 29.55 -169.99 -5.02 18.57 16
25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
26 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16
27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16
28 C -0.14 -1.77 9.59 -38.89 -0.37 -2.14 16
29 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16
30 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16
31 H 0.11 0.32 8.14 -51.94 -0.42 -0.11 16
32 H 0.14 0.56 6.45 -52.49 -0.34 0.22 16
33 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16
34 H 0.14 1.43 4.21 -76.22 -0.32 1.11 16
35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
41 H 0.08 1.15 6.68 -51.93 -0.35 0.80 16
42 H 0.08 1.69 6.59 -51.93 -0.34 1.35 16
43 H 0.08 1.72 6.91 -51.92 -0.36 1.36 16
44 H 0.02 0.38 6.38 -51.93 -0.33 0.05 16
45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
46 H 0.39 11.60 7.67 -40.82 -0.31 11.29 16
47 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16
48 H 0.16 2.13 7.66 -52.48 -0.40 1.73 16
LS Contribution 377.44 15.07 5.69 5.69
Total: -1.00 -36.18 377.44 -8.83 -45.01
By element:
Atomic # 1 Polarization: 14.94 SS G_CDS: -7.33 Total: 7.61 kcal
Atomic # 6 Polarization: 1.81 SS G_CDS: -1.86 Total: -0.05 kcal
Atomic # 7 Polarization: -63.95 SS G_CDS: -0.17 Total: -64.12 kcal
Atomic # 8 Polarization: -12.57 SS G_CDS: -0.14 Total: -12.71 kcal
Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.57 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -36.18 -8.83 -45.01 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001319770860.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.624 kcal
(2) G-P(sol) polarization free energy of solvation -36.182 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.613 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds