Wall clock time and date at job start Tue Mar 31 2020 17:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35750 * 117.00062 * 2 1 4 4 C 1.39212 * 120.81469 * 0.02562 * 3 2 1 5 5 C 1.38314 * 119.28556 * 179.97438 * 4 3 2 6 6 N 1.31611 * 120.97119 * 359.72069 * 5 4 3 7 7 C 1.32801 * 121.78273 * 0.57021 * 6 5 4 8 8 C 1.48182 * 119.70152 * 179.70643 * 7 6 5 9 9 O 1.21514 * 120.00217 * 187.57529 * 8 7 6 10 10 N 1.34776 * 119.99629 * 7.57562 * 8 7 6 11 11 C 1.46960 * 120.65776 * 11.13219 * 10 8 7 12 12 C 1.53188 * 108.89129 * 126.46118 * 11 10 8 13 13 C 1.53040 * 109.31321 * 54.55847 * 12 11 10 14 14 C 1.53045 * 109.53635 * 298.63424 * 13 12 11 15 15 C 1.46926 * 120.62721 * 190.94284 * 10 8 7 16 16 H 1.09008 * 109.58533 * 113.68427 * 15 10 8 17 17 C 1.52996 * 109.59021 * 353.40026 * 15 10 8 18 18 C 1.52999 * 109.47604 * 179.47208 * 17 15 10 19 19 N 1.46491 * 109.47307 * 175.69277 * 18 17 15 20 20 C 1.36936 * 120.00027 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00175 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00542 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99647 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00607 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46844 * 270.00195 * 24 22 20 26 26 H 1.48499 * 109.46955 * 29.99597 * 24 22 20 27 27 H 1.48499 * 109.47268 * 150.00349 * 24 22 20 28 28 C 1.39107 * 120.59814 * 359.43477 * 7 6 5 29 29 H 1.08998 * 109.46982 * 300.00407 * 1 2 3 30 30 H 1.09004 * 109.46841 * 59.99579 * 1 2 3 31 31 H 1.08989 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.35766 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.51069 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.59297 * 6.60109 * 11 10 8 35 35 H 1.09004 * 109.58160 * 246.31667 * 11 10 8 36 36 H 1.08998 * 109.49608 * 294.60532 * 12 11 10 37 37 H 1.09005 * 109.52357 * 174.52447 * 12 11 10 38 38 H 1.08998 * 109.45928 * 178.61602 * 13 12 11 39 39 H 1.08999 * 109.46076 * 58.65363 * 13 12 11 40 40 H 1.08997 * 109.49534 * 301.41137 * 14 13 12 41 41 H 1.08998 * 109.49402 * 181.31660 * 14 13 12 42 42 H 1.09003 * 109.47309 * 59.47245 * 17 15 10 43 43 H 1.09007 * 109.46835 * 299.47409 * 17 15 10 44 44 H 1.09007 * 109.46529 * 55.69349 * 18 17 15 45 45 H 1.08999 * 109.47078 * 295.69978 * 18 17 15 46 46 H 0.97000 * 120.00359 * 359.97438 * 19 18 17 47 47 H 0.96999 * 119.99953 * 180.02562 * 23 22 20 48 48 H 1.08005 * 120.50152 * 180.30146 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3039 2.3877 0.0005 5 6 1.9645 3.6029 0.0011 6 7 3.2794 3.6590 0.0066 7 6 4.0263 2.5610 0.0006 8 6 5.5035 2.6779 0.0006 9 8 6.1915 1.6866 -0.1435 10 7 6.0840 3.8837 0.1605 11 6 5.2900 5.0484 0.5761 12 6 5.9446 5.6807 1.8083 13 6 7.4092 5.9972 1.4971 14 6 8.1536 4.7015 1.1661 15 6 7.5240 4.0581 -0.0734 16 1 7.6782 4.7034 -0.9383 17 6 8.1710 2.6953 -0.3285 18 6 9.6679 2.8813 -0.5848 19 7 10.3056 1.5702 -0.7270 20 6 11.6516 1.4856 -0.9640 21 1 12.2432 2.3855 -1.0456 22 6 12.2561 0.2432 -1.0983 23 7 11.5353 -0.8536 -0.9983 24 14 14.0924 0.1278 -1.4208 25 1 14.3388 0.1294 -2.8853 26 1 14.7777 1.2910 -0.8023 27 1 14.6205 -1.1288 -0.8314 28 6 3.4346 1.3020 0.0000 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2244 2.3533 0.0005 33 1 1.3928 4.5192 0.0019 34 1 4.2769 4.7309 0.8230 35 1 5.2575 5.7764 -0.2345 36 1 5.8927 4.9845 2.6454 37 1 5.4207 6.6008 2.0673 38 1 7.8708 6.4697 2.3641 39 1 7.4613 6.6739 0.6443 40 1 8.0809 4.0147 2.0092 41 1 9.2018 4.9249 0.9674 42 1 7.7084 2.2307 -1.1993 43 1 8.0282 2.0565 0.5431 44 1 10.1165 3.4145 0.2535 45 1 9.8112 3.4563 -1.4996 46 1 9.7744 0.7619 -0.6534 47 1 11.9577 -1.7218 -1.0917 48 1 4.0436 0.4101 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319770860.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:16 Heat of formation + Delta-G solvation = -19.429055 kcal Electronic energy + Delta-G solvation = -28952.267023 eV Core-core repulsion = 25008.115355 eV Total energy + Delta-G solvation = -3944.151668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22236 -41.11413 -39.28957 -38.44997 -36.94806 -34.63738 -33.94998 -32.73912 -32.65099 -31.91610 -29.29607 -28.56478 -26.82742 -25.51568 -25.02437 -24.41031 -23.75345 -22.18316 -21.90966 -20.72612 -19.27488 -18.90030 -18.27748 -17.26803 -17.16517 -17.00369 -16.70662 -16.65062 -16.42375 -15.85010 -15.75781 -15.44224 -15.29889 -15.16348 -14.77616 -14.73771 -14.43757 -14.27149 -14.20101 -13.81468 -13.39141 -13.34942 -12.95850 -12.83294 -12.73144 -12.59300 -12.35120 -12.21389 -12.15110 -11.97757 -11.87764 -11.76487 -11.62168 -11.39782 -10.93030 -10.59961 -10.36057 -10.08841 -9.84095 -9.50160 -9.01826 -7.94996 -5.26132 -0.47773 0.17390 1.44086 1.48576 1.57043 1.65519 1.73620 2.21738 2.55217 2.72839 3.01870 3.37008 3.55984 3.61238 3.77334 3.86173 3.95532 3.99923 4.09602 4.15732 4.20205 4.30791 4.32594 4.38059 4.46203 4.47962 4.50849 4.64183 4.68965 4.74292 4.74898 4.79161 4.92055 4.94008 5.02602 5.08540 5.12601 5.19229 5.23893 5.37187 5.39544 5.46424 5.52120 5.54936 5.81974 6.15077 6.25739 6.37369 6.67410 7.10173 7.30071 8.06873 8.31709 9.29374 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.002855 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.957815 B = 9803.430212 C =11852.286033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.160 3.840 4 C -0.225 4.225 5 C 0.135 3.865 6 N -0.478 5.478 7 C 0.105 3.895 8 C 0.551 3.449 9 O -0.558 6.558 10 N -0.585 5.585 11 C 0.077 3.923 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.154 3.846 16 H 0.086 0.914 17 C -0.091 4.091 18 C 0.147 3.853 19 N -0.749 5.749 20 C -0.248 4.248 21 H 0.080 0.920 22 C -0.084 4.084 23 N -0.975 5.975 24 Si 0.983 3.017 25 H -0.284 1.284 26 H -0.265 1.265 27 H -0.294 1.294 28 C -0.169 4.169 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.185 0.815 33 H 0.214 0.786 34 H 0.149 0.851 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.030 0.970 45 H 0.019 0.981 46 H 0.369 0.631 47 H 0.251 0.749 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.776 16.356 5.409 35.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.243 6.243 3 C 0.106 3.894 4 C -0.245 4.245 5 C -0.023 4.023 6 N -0.194 5.194 7 C -0.030 4.030 8 C 0.338 3.662 9 O -0.437 6.437 10 N -0.316 5.316 11 C -0.044 4.044 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.167 4.167 15 C 0.051 3.949 16 H 0.104 0.896 17 C -0.129 4.129 18 C 0.021 3.979 19 N -0.391 5.391 20 C -0.379 4.379 21 H 0.098 0.902 22 C -0.275 4.275 23 N -0.625 5.625 24 Si 0.811 3.189 25 H -0.211 1.211 26 H -0.190 1.190 27 H -0.220 1.220 28 C -0.192 4.192 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.202 0.798 33 H 0.231 0.769 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.200 0.800 47 H 0.060 0.940 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -29.744 16.498 5.318 34.426 hybrid contribution 0.604 -2.011 -0.274 2.118 sum -29.140 14.487 5.044 32.931 Atomic orbital electron populations 1.23551 0.74916 1.06254 1.03370 1.86112 1.24771 1.26042 1.87415 1.19290 0.91242 0.86359 0.92492 1.22805 1.03598 0.91617 1.06523 1.23554 0.89029 0.99203 0.90480 1.67668 1.08204 1.28488 1.15075 1.20715 0.93285 0.89521 0.99519 1.18449 0.86884 0.83485 0.77380 1.90950 1.63183 1.38569 1.50981 1.48079 1.08692 1.09277 1.65558 1.23084 0.98333 0.86106 0.96854 1.21978 0.96028 1.01622 0.97338 1.21547 0.95450 0.95700 1.02568 1.22003 1.00337 0.98006 0.96347 1.21243 0.79062 0.95915 0.98708 0.89591 1.21893 0.93345 0.96096 1.01604 1.20994 0.92272 0.87257 0.97414 1.42647 1.06133 1.03574 1.86781 1.19726 0.85764 0.92840 1.39602 0.90213 1.25756 1.03171 0.94997 1.03612 1.69891 1.36613 0.97225 1.58813 0.84998 0.79164 0.77066 0.77660 1.21142 1.18958 1.22020 1.21337 0.93676 0.98972 1.05208 0.90282 0.90461 0.86443 0.79788 0.76944 0.83501 0.90478 0.93256 0.87845 0.90564 0.90465 0.93389 0.90368 0.93140 0.93198 0.95201 0.96338 0.79991 0.94005 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.20 16 2 O -0.33 -6.06 10.51 -90.75 -0.95 -7.01 16 3 C 0.16 3.09 6.73 22.74 0.15 3.25 16 4 C -0.23 -2.41 9.12 22.52 0.21 -2.21 16 5 C 0.14 1.46 11.17 84.74 0.95 2.41 16 6 N -0.48 -9.12 6.18 -185.13 -1.14 -10.26 16 7 C 0.10 2.84 6.57 41.85 0.27 3.12 16 8 C 0.55 18.86 7.53 86.89 0.65 19.51 16 9 O -0.56 -24.42 11.82 -3.76 -0.04 -24.47 16 10 N -0.58 -16.94 2.98 -797.93 -2.38 -19.32 16 11 C 0.08 1.52 5.80 86.35 0.50 2.02 16 12 C -0.13 -2.22 6.08 30.67 0.19 -2.03 16 13 C -0.12 -2.15 5.88 30.62 0.18 -1.97 16 14 C -0.13 -3.49 4.88 30.67 0.15 -3.34 16 15 C 0.15 4.85 3.00 44.97 0.13 4.98 16 16 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 17 C -0.09 -3.88 3.25 30.59 0.10 -3.78 16 18 C 0.15 6.90 6.05 86.38 0.52 7.42 16 19 N -0.75 -44.28 5.60 -343.47 -1.92 -46.20 16 20 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 21 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 22 C -0.08 -5.24 5.50 84.86 0.47 -4.77 16 23 N -0.97 -65.36 13.06 21.65 0.28 -65.08 16 24 Si 0.98 49.28 29.55 68.60 2.03 51.31 16 25 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 28 C -0.17 -4.60 9.59 22.72 0.22 -4.38 16 29 H 0.08 0.23 7.71 -2.39 -0.02 0.21 16 30 H 0.08 0.25 7.71 -2.38 -0.02 0.23 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.18 0.40 6.45 -2.91 -0.02 0.38 16 33 H 0.21 0.24 8.06 -2.91 -0.02 0.21 16 34 H 0.15 2.71 4.21 -50.36 -0.21 2.50 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 2.16 6.68 -2.39 -0.02 2.14 16 42 H 0.05 2.40 6.59 -2.39 -0.02 2.39 16 43 H 0.05 2.40 6.91 -2.38 -0.02 2.38 16 44 H 0.03 1.34 6.38 -2.38 -0.02 1.32 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.37 23.81 7.67 -92.71 -0.71 23.10 16 47 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 48 H 0.13 4.09 7.66 -2.91 -0.02 4.06 16 Total: -1.00 -85.47 377.44 2.58 -82.90 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.06 Total: 31.13 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.65 Total: 7.00 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -5.16 Total: -140.86 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.00 Total: -31.48 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.03 Total: 51.31 kcal Total: -85.47 2.58 -82.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319770860.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.467 kcal (2) G-P(sol) polarization free energy of solvation -85.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds