Wall clock time and date at job start Tue Mar 31 2020 17:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 120.00078 * 2 1 4 4 O 1.21279 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99999 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46953 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46867 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46867 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47332 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99499 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00377 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99928 * 359.97438 * 11 9 8 13 13 C 1.50698 * 109.46886 * 270.00390 * 12 11 9 14 14 H 1.07994 * 120.00600 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99702 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00197 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00061 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46778 * 89.99805 * 17 15 13 19 19 H 1.48499 * 109.47209 * 209.99860 * 17 15 13 20 20 H 1.48496 * 109.46893 * 329.99803 * 17 15 13 21 21 C 1.46504 * 119.99689 * 179.97438 * 11 9 8 22 22 C 1.50707 * 109.46935 * 90.00167 * 21 11 9 23 23 C 1.38227 * 119.62059 * 95.01845 * 22 21 11 24 24 C 1.38627 * 119.15702 * 179.74122 * 23 22 21 25 25 C 1.38669 * 118.42389 * 0.47826 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.49762 * 25 24 23 27 27 N 1.31856 * 119.61137 * 274.99275 * 22 21 11 28 28 H 1.09004 * 109.46681 * 300.00204 * 1 2 3 29 29 H 1.09001 * 109.46743 * 60.00390 * 1 2 3 30 30 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99520 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47329 * 59.99594 * 5 3 2 33 33 H 1.09000 * 109.47391 * 299.99729 * 5 3 2 34 34 H 1.08996 * 109.47417 * 59.99688 * 6 5 3 35 35 H 1.09001 * 109.47245 * 299.99431 * 6 5 3 36 36 H 1.09000 * 109.47425 * 60.00432 * 7 6 5 37 37 H 1.09001 * 109.46809 * 299.99803 * 7 6 5 38 38 H 1.08996 * 109.47417 * 59.99792 * 8 7 6 39 39 H 1.09001 * 109.47245 * 299.99536 * 8 7 6 40 40 H 1.08998 * 109.47243 * 30.00215 * 12 11 9 41 41 H 1.08997 * 109.46980 * 150.00484 * 12 11 9 42 42 H 0.96992 * 120.00111 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.47679 * 329.99634 * 21 11 9 44 44 H 1.09003 * 109.46652 * 209.99594 * 21 11 9 45 45 H 1.07998 * 120.41916 * 359.95342 * 23 22 21 46 46 H 1.08008 * 120.78688 * 180.22921 * 24 23 22 47 47 H 1.08002 * 120.42244 * 179.78279 * 25 24 23 48 48 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 -0.0011 7 6 5.6859 2.6096 -0.0011 8 6 6.1959 4.0521 -0.0022 9 6 7.7029 4.0522 -0.0028 10 8 8.3093 3.0018 -0.0019 11 7 8.3768 5.2194 -0.0033 12 6 7.6443 6.4881 -0.0039 13 6 7.3931 6.9224 -1.4249 14 1 7.7443 6.3145 -2.2455 15 6 6.7148 8.0960 -1.6774 16 7 6.4960 8.4754 -2.9175 17 14 6.1079 9.1480 -0.2580 18 1 7.1595 10.1271 0.1173 19 1 4.8797 9.8740 -0.6697 20 1 5.8023 8.2790 0.9068 21 6 9.8418 5.2193 -0.0033 22 6 10.3441 5.2187 -1.4242 23 6 10.6710 6.4154 -2.0338 24 6 11.1373 6.4032 -3.3393 25 6 11.2483 5.1832 -3.9891 26 6 10.9029 4.0274 -3.3151 27 7 10.4672 4.0764 -2.0713 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 4.0090 0.6535 -0.8908 33 1 4.0096 0.6532 0.8892 34 1 3.7929 3.1237 0.8888 35 1 3.7923 3.1233 -0.8911 36 1 6.0493 2.0955 -0.8909 37 1 6.0492 2.0961 0.8892 38 1 5.8326 4.5667 0.8873 39 1 5.8327 4.5652 -0.8927 40 1 6.6919 6.3580 0.5100 41 1 8.2334 7.2480 0.5095 42 1 6.0185 9.3007 -3.0951 43 1 10.2052 4.3296 0.5109 44 1 10.2051 6.1096 0.5101 45 1 10.5678 7.3478 -1.4987 46 1 11.4039 7.3225 -3.8397 47 1 11.6046 5.1366 -5.0076 48 1 10.9904 3.0729 -3.8127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320785169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:27 Heat of formation + Delta-G solvation = -49.958931 kcal Electronic energy + Delta-G solvation = -28445.993881 eV Core-core repulsion = 24500.518338 eV Total energy + Delta-G solvation = -3945.475543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.84920 -39.72064 -38.79044 -35.39950 -34.90324 -34.55190 -32.69251 -31.91527 -31.46458 -30.51735 -28.16435 -27.47316 -26.12606 -24.20186 -22.99024 -22.39129 -21.72410 -20.85776 -20.38388 -18.26594 -17.19454 -17.11634 -16.44628 -16.18711 -16.05439 -15.91641 -15.62719 -15.23078 -15.20955 -14.85813 -14.24508 -13.90325 -13.86363 -13.37096 -13.22666 -12.94264 -12.80450 -12.59236 -12.58300 -12.40412 -12.14449 -12.00950 -11.92807 -11.62443 -11.32308 -11.15948 -10.97547 -10.95585 -10.83013 -10.53527 -10.27749 -10.21369 -9.91859 -9.61477 -9.32218 -9.31824 -9.01134 -8.88804 -8.70828 -8.41652 -7.71932 -6.18373 -4.19303 1.61322 1.86316 2.57753 3.07666 3.18486 3.27203 3.29244 3.46617 3.87852 4.28679 4.48400 4.65463 4.82058 4.93445 5.01272 5.07811 5.11835 5.24605 5.26570 5.29646 5.37208 5.50755 5.55381 5.56304 5.58151 5.66738 5.82723 5.85076 5.95793 6.05798 6.07487 6.16165 6.21159 6.22610 6.29114 6.38800 6.46813 6.60973 6.64661 6.69258 6.72183 6.74328 7.22229 7.28880 7.36241 7.46824 8.12094 8.17605 8.44357 8.59427 8.88552 9.04571 9.41282 10.94049 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.003175 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.230051 B = 8817.191655 C =10515.474815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.743 5.743 3 C 0.509 3.491 4 O -0.535 6.535 5 C -0.139 4.139 6 C -0.106 4.106 7 C -0.099 4.099 8 C -0.137 4.137 9 C 0.520 3.480 10 O -0.552 6.552 11 N -0.591 5.591 12 C 0.206 3.794 13 C -0.533 4.533 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.868 3.132 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.172 3.828 22 C 0.121 3.879 23 C -0.128 4.128 24 C -0.079 4.079 25 C -0.179 4.179 26 C 0.086 3.914 27 N -0.461 5.461 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.401 0.599 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -12.472 4.744 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.396 5.396 3 C 0.296 3.704 4 O -0.411 6.411 5 C -0.179 4.179 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.177 4.177 9 C 0.309 3.691 10 O -0.431 6.431 11 N -0.322 5.322 12 C 0.085 3.915 13 C -0.572 4.572 14 H 0.096 0.904 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.695 3.305 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.188 1.188 21 C 0.048 3.952 22 C -0.018 4.018 23 C -0.148 4.148 24 C -0.105 4.105 25 C -0.199 4.199 26 C -0.072 4.072 27 N -0.170 5.170 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.235 0.765 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.143 0.857 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.223 -12.858 5.082 13.880 hybrid contribution -0.151 1.336 -0.205 1.360 sum -1.374 -11.522 4.877 12.587 Atomic orbital electron populations 1.21509 0.80001 1.01930 1.02318 1.45895 1.07673 1.08963 1.77025 1.20998 0.90796 0.83364 0.75228 1.90726 1.70642 1.31290 1.48462 1.21702 0.90730 1.00981 1.04441 1.21385 0.95312 0.93894 1.03792 1.21314 0.93493 0.96010 1.02911 1.21636 0.92566 0.98353 1.05117 1.20528 0.90096 0.83121 0.75370 1.90628 1.70527 1.31098 1.50806 1.47901 1.04750 1.07548 1.72047 1.19871 0.92112 0.80996 0.98509 1.21347 1.37124 1.07535 0.91169 0.90447 1.24863 0.95265 0.97190 0.95299 1.69892 1.40883 1.23381 1.18612 0.86978 0.79035 0.81236 0.83278 1.20085 1.20986 1.18799 1.20084 0.81525 1.02891 0.90740 1.21574 0.94406 0.88391 0.97456 1.21918 0.97860 0.99275 0.95787 1.21474 0.96579 0.97920 0.94554 1.22019 1.03085 0.93987 1.00836 1.22606 0.95704 0.97922 0.90954 1.67535 1.11080 1.29540 1.08874 0.92366 0.92298 0.90882 0.76529 0.88754 0.88878 0.91288 0.90912 0.91436 0.91744 0.89663 0.87716 0.94507 0.95469 0.92496 0.89262 0.89734 0.84891 0.85445 0.85691 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.34 5.71 -67.07 -0.38 -6.73 16 3 C 0.51 6.22 7.83 -10.99 -0.09 6.13 16 4 O -0.54 -9.02 15.98 5.56 0.09 -8.93 16 5 C -0.14 -1.46 5.70 -27.88 -0.16 -1.62 16 6 C -0.11 -1.45 4.50 -26.73 -0.12 -1.57 16 7 C -0.10 -1.50 4.50 -26.73 -0.12 -1.62 16 8 C -0.14 -2.47 4.25 -27.88 -0.12 -2.58 16 9 C 0.52 10.71 7.67 -10.99 -0.08 10.62 16 10 O -0.55 -12.30 15.56 5.55 0.09 -12.21 16 11 N -0.59 -12.08 2.44 -176.43 -0.43 -12.51 16 12 C 0.21 4.45 4.08 -5.20 -0.02 4.43 16 13 C -0.53 -13.67 9.69 -34.44 -0.33 -14.00 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 17 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 21 C 0.17 3.18 5.76 -5.19 -0.03 3.15 16 22 C 0.12 2.36 6.36 -82.58 -0.53 1.83 16 23 C -0.13 -2.35 9.58 -39.44 -0.38 -2.72 16 24 C -0.08 -1.32 10.18 -39.28 -0.40 -1.72 16 25 C -0.18 -2.81 10.11 -39.44 -0.40 -3.21 16 26 C 0.09 1.47 11.18 -17.55 -0.20 1.27 16 27 N -0.46 -9.25 10.27 -9.47 -0.10 -9.35 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.40 2.10 8.83 -40.82 -0.36 1.74 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.09 1.42 7.40 -51.93 -0.38 1.03 16 39 H 0.10 2.09 8.00 -51.93 -0.42 1.68 16 40 H 0.04 0.78 5.50 -51.93 -0.29 0.50 16 41 H 0.03 0.56 7.32 -51.93 -0.38 0.18 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.09 1.65 7.42 -51.93 -0.39 1.26 16 44 H 0.08 1.33 7.79 -51.93 -0.40 0.92 16 45 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 46 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 47 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 48 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -34.91 403.69 -8.67 -43.58 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.69 Total: 8.24 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.43 Total: 1.64 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.14 Total: -53.41 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.18 Total: -21.14 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.91 -8.67 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320785169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.376 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds